Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 1.1e-124 449.9 218 100.0
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 4.6e-86 321.6 219 71.2
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 1.1e-79 300.4 219 64.8
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 4.1e-79 298.5 218 63.8
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 9.2e-79 297.4 219 65.3
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 1.2e-78 297.0 219 65.8
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 2.7e-78 295.8 218 63.8
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 4.6e-78 295.0 218 63.3
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 1.7e-77 293.1 219 63.5
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 3.9e-77 292.0 219 62.1
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 5.1e-77 291.6 219 62.6
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 5.1e-77 291.6 219 62.6
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 8.6e-77 290.8 219 62.1
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 8.6e-77 290.8 219 62.6
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 1.5e-76 290.0 219 63.5
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 1.5e-76 290.0 219 63.0
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 1.5e-76 290.0 219 62.1
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 1.5e-76 290.0 219 63.5
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 1.9e-76 289.7 220 64.1
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 1.9e-76 289.7 222 63.5
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 1.9e-76 289.7 219 62.6
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 2.5e-76 289.3 219 63.5
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 3.3e-76 288.9 219 63.5
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 1.2e-75 287.0 219 60.7
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 1.6e-75 286.6 219 61.2
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 1.6e-75 286.6 218 60.6
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 3.6e-75 285.4 219 61.6
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 4.7e-75 285.0 220 64.1
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 8.1e-75 284.3 219 62.6
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 8.1e-75 284.3 219 62.6
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 1.1e-74 283.9 219 63.0
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 1.8e-74 283.1 221 63.3
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 1.8e-74 283.1 219 62.1
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 2.4e-74 282.7 219 61.2
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 3.1e-74 282.3 221 63.3
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 3.1e-74 282.3 219 62.6
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 4.0e-74 282.0 218 60.1
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 4.0e-74 282.0 219 62.6
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 4.0e-74 282.0 221 62.9
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 5.2e-74 281.6 219 63.0
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 6.9e-74 281.2 221 62.9
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 6.9e-74 281.2 220 62.3
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 6.9e-74 281.2 219 61.6
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 6.9e-74 281.2 218 61.0
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 6.9e-74 281.2 219 61.2
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 1.5e-73 280.0 218 60.1
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.5e-73 280.0 221 62.9
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 2.0e-73 279.6 219 63.0
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 2.0e-73 279.6 221 61.5
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 2.0e-73 279.6 222 61.3
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 2.6e-73 279.3 219 61.6
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 2.6e-73 279.3 219 60.7
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 2.6e-73 279.3 218 59.6
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 2.6e-73 279.3 218 60.6
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 2.6e-73 279.3 218 61.9
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 3.4e-73 278.9 221 61.5
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 3.4e-73 278.9 221 61.5
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 3.4e-73 278.9 222 63.5
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 7.6e-73 277.7 219 58.4
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 1.7e-72 276.6 218 60.1
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 3.8e-72 275.4 221 61.5
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 8.4e-72 274.2 221 62.0
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 1.4e-71 273.5 218 59.2
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 2.4e-71 272.7 220 60.5
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 3.2e-71 272.3 218 58.3
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 4.2e-71 271.9 220 59.5
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 4.2e-71 271.9 220 59.5
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 5.4e-71 271.6 237 57.8
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 9.3e-71 270.8 218 59.2
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 9.3e-71 270.8 218 59.2
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 2.7e-70 269.2 218 59.2
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 2.7e-70 269.2 218 59.2
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 3.5e-70 268.9 218 59.6
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 4.6e-70 268.5 219 61.2
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 1.0e-69 267.3 219 57.5
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 1.1e-68 263.8 220 58.6
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 2.5e-68 262.7 220 58.2
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 4.3e-68 261.9 217 57.1
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 5.6e-68 261.5 228 57.0
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 7.3e-68 261.2 221 57.0
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 9.6e-68 260.8 217 56.2
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 1.3e-67 260.4 219 57.1
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 1.3e-67 260.4 219 57.1
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 1.3e-67 260.4 193 63.2
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 1.3e-67 260.4 218 58.3
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 1.6e-67 260.0 194 64.4
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 2.1e-67 259.6 219 57.1
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 2.1e-67 259.6 193 63.7
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 3.6e-67 258.8 192 62.0
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 6.2e-67 258.1 219 56.6
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 8.1e-67 257.7 210 57.1
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 1.8e-66 256.5 219 56.6
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 1.8e-66 256.5 231 54.1
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 5.3e-66 255.0 209 56.5
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 1.2e-65 253.8 193 62.2
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 2.0e-65 253.1 220 55.0
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 2.0e-65 253.1 220 55.0
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 4.5e-65 251.9 221 55.2
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 9.9e-65 250.8 219 58.4
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 2.2e-64 249.6 193 59.1
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 3.8e-64 248.8 299 46.5
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 4.9e-64 248.4 199 60.3
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 8.4e-64 247.7 196 61.7
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 8.4e-64 247.7 197 60.9
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 5.4e-63 245.0 214 55.6
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 7.1e-63 244.6 194 60.3
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 1.2e-62 243.8 195 59.5
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 6.0e-62 241.5 211 52.1
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 1.0e-61 240.7 193 60.1
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 6.7e-61 238.0 193 57.5
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 1.9e-60 236.5 197 58.4
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 2.5e-60 236.1 193 57.5
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 1.3e-59 233.8 288 45.8
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 4.8e-59 231.9 184 60.3
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 4.0e-58 228.8 191 55.5
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 4.0e-58 228.8 196 56.6
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 5.3e-58 228.4 203 54.2
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 1.2e-57 227.3 211 50.2
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 3.8e-56 222.2 223 50.7
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 3.8e-56 222.2 223 50.7
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 6.4e-56 221.5 223 49.8
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 1.4e-55 220.3 221 52.0
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 5.5e-55 218.4 218 50.9
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 2.3e-53 213.0 218 50.5
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 4.0e-50 202.2 180 56.7
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 2.6e-49 199.5 218 46.3
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 2.9e-48 196.1 168 54.8
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 2.9e-48 196.1 157 58.6
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 3.8e-48 195.7 171 55.0
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 1.4e-47 193.7 194 51.0
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 5.5e-47 191.8 195 48.7
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 4.3e-44 182.2 163 56.4
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 9.6e-44 181.0 220 42.3
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.7e-40 170.2 167 49.1
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 2.1e-38 163.3 159 48.4
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 3.6e-38 162.5 259 36.7
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 7.9e-38 161.4 215 41.4
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 1.3e-37 160.6 119 60.5
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 1.1e-36 157.5 187 42.8
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 4.1e-34 149.1 93 69.9
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 1.1e-28 131.0 247 36.4
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 4.8e-27 125.6 82 70.7
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 3.2e-23 112.8 82 61.0
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 1.1e-20 104.4 99 50.5
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 2.4e-18 96.7 139 38.8
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 3.0e-13 79.7 88 42.0
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 1.6e-09 67.4 79 48.1
Cfa024505 Carpinus fangiana HOM05D005053 ORTHO05D124968 1.9e-07 60.5 207 23.7


User provided reference genes

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