Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 3563.9 1854 100.0
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 3368.2 1876 94.7
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 0.0e+00 1859.3 1721 56.2
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1826.6 1694 55.7
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1789.2 1679 54.8
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 0.0e+00 1780.8 1931 51.0
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 0.0e+00 1749.9 1500 58.3
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 0.0e+00 1744.2 1686 54.7
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1740.7 1700 54.1
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 0.0e+00 1730.7 1693 54.1
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 1717.6 1696 54.0
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 0.0e+00 1716.0 1715 53.1
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 1708.3 1699 53.6
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 0.0e+00 1704.5 1684 53.1
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 0.0e+00 1704.1 1698 53.2
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 0.0e+00 1701.8 1729 52.5
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 0.0e+00 1699.9 1707 53.4
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 0.0e+00 1699.9 1509 55.5
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 1699.9 1558 55.3
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 0.0e+00 1696.0 1709 53.3
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 0.0e+00 1695.2 1708 52.9
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 0.0e+00 1692.6 1696 53.1
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 0.0e+00 1690.6 1672 53.5
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 1690.2 1678 52.7
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 1690.2 1695 53.0
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 0.0e+00 1688.7 1711 52.3
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 0.0e+00 1688.3 1716 52.6
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 1687.5 1729 52.2
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 1687.5 1491 56.3
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 0.0e+00 1686.8 1492 56.2
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 1684.8 1674 52.9
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 0.0e+00 1684.8 1700 52.4
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 0.0e+00 1682.2 1673 53.0
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 1680.6 1688 53.1
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 1679.8 1693 53.5
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 1678.3 1563 55.7
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 0.0e+00 1678.3 1705 52.1
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 1677.5 1723 52.2
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 0.0e+00 1674.8 1729 51.5
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 1674.1 1662 53.9
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 1673.7 1729 51.9
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 0.0e+00 1668.7 1721 52.5
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 1664.0 1716 52.0
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 1662.9 1732 51.2
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 0.0e+00 1661.0 1483 56.3
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 0.0e+00 1657.5 1717 51.1
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 1657.1 1666 52.5
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 0.0e+00 1656.0 1491 55.3
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 0.0e+00 1655.2 1701 52.4
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 0.0e+00 1653.3 1682 51.2
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 0.0e+00 1651.3 1681 51.6
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 0.0e+00 1647.9 1732 52.0
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 0.0e+00 1647.5 1583 53.8
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 1645.6 1694 51.5
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 1644.4 1621 54.3
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 1636.3 1719 51.1
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 0.0e+00 1632.5 1682 51.2
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 0.0e+00 1624.0 1711 51.4
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 0.0e+00 1622.8 1699 51.1
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 0.0e+00 1621.3 1706 50.8
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 0.0e+00 1620.5 1679 51.9
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 1619.8 1691 50.7
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 1618.6 1690 51.9
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 0.0e+00 1608.6 1720 49.9
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 0.0e+00 1608.6 1701 50.8
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 0.0e+00 1608.2 1679 50.7
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 0.0e+00 1607.4 1691 52.1
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 0.0e+00 1605.9 1672 51.3
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 0.0e+00 1600.1 1696 50.2
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 1598.6 1699 49.8
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 1597.4 1709 50.5
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 1592.4 1491 53.2
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 0.0e+00 1591.6 1701 50.0
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 0.0e+00 1589.7 1433 55.1
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 0.0e+00 1588.5 1662 50.6
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 1584.3 1713 50.0
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 0.0e+00 1583.5 1694 49.7
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 0.0e+00 1576.6 1552 52.1
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 1571.6 1712 49.1
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 0.0e+00 1568.5 1667 49.7
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 1566.2 1438 54.1
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 1563.9 1699 49.6
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 0.0e+00 1560.8 1849 47.6
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 0.0e+00 1554.7 1678 49.5
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 1549.6 1809 48.6
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 0.0e+00 1531.9 1347 56.6
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 0.0e+00 1519.2 1696 48.7
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 0.0e+00 1519.2 1371 54.9
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 0.0e+00 1518.1 1648 50.2
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1480.7 1311 55.8
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 0.0e+00 1465.7 2092 42.4
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 0.0e+00 1417.5 1469 49.9
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 0.0e+00 1412.1 1672 47.1
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 0.0e+00 1392.5 1179 58.4
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 0.0e+00 1356.3 1699 46.3
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 0.0e+00 1335.5 1766 44.6
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1228.0 1102 55.3
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1204.1 1062 56.2
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 0.0e+00 1201.8 1215 51.1
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 0.0e+00 1151.3 1577 43.7
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 0.0e+00 1097.4 955 57.0
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 7.9e-296 1021.5 1337 43.5
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 4.1e-276 956.1 1127 48.1
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 7.7e-275 951.8 1097 49.1
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 4.1e-268 929.5 925 51.1
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 3.6e-240 836.6 934 46.9
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 4.4e-222 776.5 894 50.7
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 2.9e-221 773.9 759 52.0
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 2.4e-220 770.8 823 45.9
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 3.7e-213 746.9 635 59.2
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 9.6e-209 732.3 692 50.9
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 2.1e-192 677.9 572 60.1
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 6.2e-192 676.4 619 54.8
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 1.3e-184 652.1 819 47.1
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 1.1e-145 522.7 1521 27.9
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 3.6e-139 501.1 448 56.5
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 1.8e-130 472.2 395 60.5
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 7.5e-129 466.8 329 69.3
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 1.7e-112 412.5 441 46.9
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 1.2e-94 353.2 907 29.7
Glyma.15G192800 Glycine max HOM05D004072 ORTHO05D005933 1.8e-90 339.3 575 41.2
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 7.3e-84 317.4 344 51.7
Lj1A1163T36 Lonicera japonica HOM05D004072 ORTHO05D005933 1.3e-75 290.0 438 41.3
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 4.5e-73 281.6 239 56.9
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 4.2e-71 275.0 676 29.7
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 3.5e-70 271.9 212 59.4
HPP92_000970 Vanilla planifolia HOM05D004072 ORTHO05D005933 1.6e-67 263.1 511 39.5
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 1.1e-63 250.4 238 49.2
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 3.3e-52 212.2 217 48.4
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.8e-50 206.5 189 53.4
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.2e-46 193.7 192 47.9
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 8.8e-45 187.6 153 62.1
Glyma.09G084500 Glycine max HOM05D004072 ORTHO05D005933 5.7e-44 184.9 352 42.0
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 8.5e-40 171.0 175 48.6
PGSC0003DMG400021174 Solanum tuberosum HOM05D004072 ORTHO05D005933 3.6e-38 165.6 116 67.2
QL05p053334 Quercus lobata HOM05D004072 ORTHO05D005933 3.9e-37 162.2 97 77.3
VMungo1309G0832 Vigna mungo HOM05D004072 ORTHO05D005933 1.2e-33 150.6 375 37.6
CBR_g34931 Chara braunii HOM05D000019 ORTHO05D001702 7.7e-33 147.9 129 57.4
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 3.0e-29 136.0 206 40.8
Cpa.g.sc17.83 Carica papaya HOM05D004072 ORTHO05D005933 4.5e-25 122.1 116 46.6
MELO3C003358.2 Cucumis melo HOM05D004072 ORTHO05D005933 8.5e-24 117.9 187 39.6
CSS0009414 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 9.4e-23 114.4 73 75.3
Cc09_g08270 Coffea canephora HOM05D004072 ORTHO05D005933 1.4e-21 110.5 70 74.3
Lsat_1_v5_gn_1_88400 Lactuca sativa HOM05D004072 ORTHO05D005933 4.4e-20 105.5 113 42.5
vmacro01040 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 1.6e-17 97.1 208 33.7
Cc09_g08260 Coffea canephora HOM05D004072 ORTHO05D005933 4.5e-17 95.5 72 68.1
Medtr3g010273 Medicago truncatula HOM05D004072 ORTHO05D005933 2.9e-16 92.8 92 47.8
Actinidia04621 Actinidia chinensis HOM05D004072 ORTHO05D005933 2.5e-15 89.7 98 46.9
Cpa.g.sc17.84 Carica papaya HOM05D004072 ORTHO05D019491 4.7e-14 85.5 74 58.1
RcHm_v2.0_Chr1g0313151 Rosa chinensis HOM05D004072 ORTHO05D005933 8.0e-14 84.7 56 71.4
Hma1.2p1_1600F.1_g293130 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 1.2e-12 80.9 89 52.8
SalBow5G3729 Salvia bowleyana HOM05D004072 ORTHO05D007163 8.3e-11 74.7 98 38.8
HanXRQChr09g0247891 Helianthus annuus HOM05D004072 ORTHO05D005933 2.4e-10 73.2 115 37.4
PGSC0003DMG400002279 Solanum tuberosum HOM05D004072 ORTHO05D005933 5.9e-09 68.6 47 66.0
SEGI_36323 Sequoiadendron giganteum HOM05D004072 ORTHO05D385563 7.8e-09 68.2 54 50.0
Nn1g03421 Nelumbo nucifera HOM05D004072 ORTHO05D019491 5.0e-08 65.5 47 61.7
Duzib248G0219 Durio zibethinus HOM05D004072 ORTHO05D019491 6.6e-08 65.1 94 40.4
SalBow5G4417 Salvia bowleyana HOM05D004072 ORTHO05D007163 1.1e-07 64.3 97 37.1
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 1.5e-07 63.9 49 57.1
CAN.G23816.1 Capsicum annuum HOM05D004072 ORTHO05D038051 3.3e-07 62.8 71 39.4
CBR_g34927 Chara braunii HOM05D000019 ORTHO05D000002 3.3e-07 62.8 97 32.0
Lsat_1_v5_gn_6_117121 Lactuca sativa HOM05D004072 ORTHO05D001686 4.3e-07 62.4 44 61.4
Lsat_1_v5_gn_7_25100 Lactuca sativa HOM05D003161 ORTHO05D005173 3.6e-06 59.3 65 43.1
CARHR128810 Cardamine hirsuta HOM05D004072 ORTHO05D019491 6.1e-06 58.5 43 58.1
Duzib248G0875 Durio zibethinus HOM05D000121 ORTHO05D000102 6.1e-06 58.5 44 63.6


User provided reference genes

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