Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO271G0028 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 7.5e-132 473.8 227 100.0
SMO116G0459 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 6.7e-40 168.3 200 51.5
SMO308G0073 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 2.0e-23 113.6 78 71.8
SMO201G0239 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 1.8e-16 90.5 57 73.7
SMO117G0113 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 9.8e-15 84.7 50 78.0
Solyc09g074830.3 Solanum lycopersicum HOM05D004536 ORTHO05D005628 1.2e-12 77.8 109 40.4
VMungo1383G2476 Vigna mungo HOM05D004536 ORTHO05D005628 1.2e-12 77.8 90 44.4
Phvul.001G204900 Phaseolus vulgaris HOM05D004536 ORTHO05D005628 2.0e-12 77.0 90 43.3
Sopen09g029670 Solanum pennellii HOM05D004536 ORTHO05D005628 4.6e-12 75.9 109 39.4
PGSC0003DMG400011389 Solanum tuberosum HOM05D004536 ORTHO05D005628 1.0e-11 74.7 109 38.5
Nitab4.5_0009457g0010 Nicotiana tabacum HOM05D004536 ORTHO05D005628 1.3e-11 74.3 109 38.5
arahy.Tifrunner.gnm1.ann1.RD3VC2 Arachis hypogaea HOM05D004536 ORTHO05D005628 1.7e-11 73.9 65 50.8
Manes.05G065100 Manihot esculenta HOM05D004536 ORTHO05D005628 1.7e-11 73.9 112 38.4
Prupe.8G256300 Prunus persica HOM05D004536 ORTHO05D005628 1.7e-11 73.9 109 39.4
Lalb_Chr18g0047231 Lupinus albus HOM05D004536 ORTHO05D005628 2.3e-11 73.6 65 52.3
Glyma.03G211900 Glycine max HOM05D004536 ORTHO05D005628 3.0e-11 73.2 65 50.8
CAN.G339.41 Capsicum annuum HOM05D004536 ORTHO05D005628 3.9e-11 72.8 78 43.6
Ciclev10024323m.g Citrus clementina HOM05D004536 ORTHO05D005628 3.9e-11 72.8 71 47.9
Nn4g25926 Nelumbo nucifera HOM05D004536 ORTHO05D005628 3.9e-11 72.8 109 37.6
Peaxi162Scf00067g00235 Petunia axillaris HOM05D004536 ORTHO05D005628 3.9e-11 72.8 109 38.5
arahy.Tifrunner.gnm1.ann1.BFHA12 Arachis hypogaea HOM05D004536 ORTHO05D005628 8.6e-11 71.6 65 49.2
Nitab4.5_0001697g0010 Nicotiana tabacum HOM05D004536 ORTHO05D005628 8.6e-11 71.6 109 37.6
Migut.N01407 Erythranthe guttata HOM05D004536 ORTHO05D005628 1.1e-10 71.2 65 50.8
SMO117G0342 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 1.5e-10 70.9 40 82.5
Ah.15g093870 Amaranthus hybridus HOM05D000154 ORTHO05D000092 1.9e-10 70.5 101 39.6
Gorai.007G129700 Gossypium raimondii HOM05D004536 ORTHO05D005628 1.9e-10 70.5 107 39.3
TAR636G0132 Trochodendron aralioides HOM05D000319 ORTHO05D000903 1.9e-10 70.5 109 38.5
COL.COLO4_23401 Corchorus olitorius HOM05D004536 ORTHO05D005628 2.5e-10 70.1 65 49.2
Lj1g0006956 Lotus japonicus HOM05D004536 ORTHO05D005628 2.5e-10 70.1 78 43.6
PGR090G0002 Punica granatum HOM05D004536 ORTHO05D005628 2.5e-10 70.1 71 45.1
PGR119G2278 Punica granatum HOM05D004536 ORTHO05D005628 2.5e-10 70.1 71 45.1
MD03G1283400 Malus domestica HOM05D004536 ORTHO05D005628 3.3e-10 69.7 65 46.2
MD11G1303200 Malus domestica HOM05D004536 ORTHO05D005628 3.3e-10 69.7 65 49.2
Lj2A1189G43 Lonicera japonica HOM05D004536 ORTHO05D005628 4.3e-10 69.3 82 40.2
QL12p030151 Quercus lobata HOM05D004536 ORTHO05D005628 4.3e-10 69.3 71 46.5
Atru.chr5.1224 Acer truncatum HOM05D004536 ORTHO05D005628 5.6e-10 68.9 109 37.6
Dinv33024 Davidia involucrata HOM05D004536 ORTHO05D005628 5.6e-10 68.9 109 37.6
Migut.M00484 Erythranthe guttata HOM05D004536 ORTHO05D005628 5.6e-10 68.9 65 49.2
Manes.01G215900 Manihot esculenta HOM05D004536 ORTHO05D005628 5.6e-10 68.9 71 45.1
RcHm_v2.0_Chr6g0293261 Rosa chinensis HOM05D004536 ORTHO05D005628 5.6e-10 68.9 65 47.7
DCAR_012399 Daucus carota HOM05D004536 ORTHO05D005628 7.3e-10 68.6 65 47.7
Oeu024513.3 Olea europaea HOM05D004536 ORTHO05D005628 7.3e-10 68.6 65 50.8
Gohir.A11G115900 Gossypium hirsutum HOM05D004536 ORTHO05D005628 9.5e-10 68.2 71 45.1
Gohir.D11G120800 Gossypium hirsutum HOM05D004536 ORTHO05D005628 9.5e-10 68.2 71 45.1
Potri.002G208251 Populus trichocarpa HOM05D004536 ORTHO05D005628 9.5e-10 68.2 111 38.7
TPR.G9637 Trifolium pratense HOM05D004536 ORTHO05D005628 9.5e-10 68.2 65 49.2
Aqoxy5G00653 Aquilegia oxysepala HOM05D005016 ORTHO05D005628 1.2e-09 67.8 65 47.7
Cfa005976 Carpinus fangiana HOM05D004536 ORTHO05D005628 1.2e-09 67.8 109 37.6
PSO832G3458 Papaver somniferum HOM05D004536 ORTHO05D005628 1.2e-09 67.8 109 37.6
Sabra02G0151200 Salix brachista HOM05D004536 ORTHO05D005628 1.2e-09 67.8 71 43.7
Mapoly0002s0169 Marchantia polymorpha HOM05D004536 ORTHO05D005628 1.6e-09 67.4 110 38.2
Medtr7g108500 Medicago truncatula HOM05D004536 ORTHO05D005628 1.6e-09 67.4 71 43.7
Pp3c16_16660 Physcomitrium patens HOM05D004536 ORTHO05D005628 1.6e-09 67.4 112 40.2
Psat3g023800 Pisum sativum HOM05D004536 ORTHO05D005628 1.6e-09 67.4 102 39.2
Phvul.001G172200 Phaseolus vulgaris HOM05D004536 ORTHO05D005628 2.1e-09 67.0 65 47.7
Sc17g0003350 Simmondsia chinensis HOM05D004536 ORTHO05D005628 2.1e-09 67.0 65 47.7
GSVIVG01010948001 Vitis vinifera HOM05D004536 ORTHO05D005628 2.1e-09 67.0 65 49.2
MELO3C016039.2 Cucumis melo HOM05D004536 ORTHO05D005628 2.8e-09 66.6 106 39.6
DCAR_018342 Daucus carota HOM05D004536 ORTHO05D005628 2.8e-09 66.6 106 38.7
HanXRQChr06g0163971 Helianthus annuus HOM05D004536 ORTHO05D005628 2.8e-09 66.6 109 37.6
SHI15387 Sapria himalayana HOM05D004536 ORTHO05D005628 2.8e-09 66.6 71 45.1
AUR62008593 Chenopodium quinoa HOM05D004536 ORTHO05D005628 3.6e-09 66.2 65 44.6
Ca_09139_v3 Cicer arietinum L. HOM05D004536 ORTHO05D005628 3.6e-09 66.2 65 47.7
PSO210G1618 Papaver somniferum HOM05D004536 ORTHO05D005628 3.6e-09 66.2 109 37.6
Potri.014G132400 Populus trichocarpa HOM05D004536 ORTHO05D005628 3.6e-09 66.2 115 35.7
Rhsim01G0282800 Rhododendron simsii HOM05D004536 ORTHO05D005628 3.6e-09 66.2 65 47.7
Sed0010277 Sechium edule HOM05D004536 ORTHO05D005628 3.6e-09 66.2 109 37.6
Hund18118 Selenicereus undatus HOM05D004536 ORTHO05D005628 3.6e-09 66.2 109 35.8
Actinidia24840 Actinidia chinensis HOM05D004536 ORTHO05D005628 4.7e-09 65.9 71 43.7
Cc01_g20560 Coffea canephora HOM05D004536 ORTHO05D005628 4.7e-09 65.9 65 44.6
CsaV3_7G029010 Cucumis sativus L. HOM05D004536 ORTHO05D005628 4.7e-09 65.9 106 39.6
SalBow2G0652 Salvia bowleyana HOM05D004536 ORTHO05D005628 4.7e-09 65.9 107 37.4
CSS0025822 Camellia sinensis var. sinensis HOM05D004536 ORTHO05D005628 6.2e-09 65.5 106 38.7
CANSAT25G0197 Cannabis sativa HOM05D004536 ORTHO05D005628 6.2e-09 65.5 65 46.2
CANSAT25G0282 Cannabis sativa HOM05D004536 ORTHO05D005628 6.2e-09 65.5 65 46.2
FvH4_c6g00040 Fragaria vesca HOM05D004536 ORTHO05D005628 6.2e-09 65.5 65 44.6
Thecc.01G294900 Theobroma cacao HOM05D004536 ORTHO05D005628 6.2e-09 65.5 115 35.7
MSTRG.12600 Avicennia marina HOM05D004536 ORTHO05D005628 8.0e-09 65.1 65 46.2
CiPaw.07G104100 Carya illinoinensis HOM05D004536 ORTHO05D005628 8.0e-09 65.1 71 43.7
FAN24G0904 Fragaria x ananassa HOM05D004536 ORTHO05D005628 8.0e-09 65.1 65 44.6
EL10Ac7g17495 Beta vulgaris HOM05D004536 ORTHO05D005628 1.0e-08 64.7 65 46.2
ClCG09G006150 Citrullus lanatus HOM05D004536 ORTHO05D005628 1.0e-08 64.7 106 37.7
ECA236G2131 Erigeron canadensis HOM05D004536 ORTHO05D005628 1.0e-08 64.7 65 46.2
Glyma.13G025500 Glycine max HOM05D004536 ORTHO05D005628 1.0e-08 64.7 102 38.2
CDE10G0909 Ceratophyllum demersum HOM05D000137 ORTHO05D000503 1.8e-08 63.9 78 39.7
FAN20G2283 Fragaria x ananassa HOM05D004536 ORTHO05D005628 1.8e-08 63.9 65 43.1
Sp1g01960 Schrenkiella parvula HOM05D004536 ORTHO05D005628 3.1e-08 63.2 119 37.0
BcaC07g42280 Brassica carinata HOM05D004536 ORTHO05D005628 4.0e-08 62.8 107 38.3
MBI16_g23764_MAGBIO Magnolia biondii HOM05D004536 ORTHO05D005628 4.0e-08 62.8 109 35.8
BcaB03g13494 Brassica carinata HOM05D004536 ORTHO05D005628 5.2e-08 62.4 107 38.3
A08p37490 Brassica napus HOM05D004536 ORTHO05D005628 5.2e-08 62.4 107 38.3
BraA08t35647Z Brassica rapa HOM05D004536 ORTHO05D005628 5.2e-08 62.4 107 38.3
CARHR002300 Cardamine hirsuta HOM05D004536 ORTHO05D005628 5.2e-08 62.4 119 37.0
Eucgr.H01178 Eucalyptus grandis HOM05D004536 ORTHO05D005628 5.2e-08 62.4 78 42.3
Eucgr.H01182 Eucalyptus grandis HOM05D004536 ORTHO05D005628 5.2e-08 62.4 78 42.3
Lsat_1_v5_gn_8_54521 Lactuca sativa HOM05D004536 ORTHO05D005628 6.8e-08 62.0 49 55.1
SEGI_27037 Sequoiadendron giganteum HOM05D004536 ORTHO05D005628 6.8e-08 62.0 111 36.9
BcaB01g06383 Brassica carinata HOM05D004536 ORTHO05D005628 8.9e-08 61.6 71 45.1
BcaC07g42414 Brassica carinata HOM05D004536 ORTHO05D005628 8.9e-08 61.6 107 38.3
A09p68450 Brassica napus HOM05D004536 ORTHO05D005628 8.9e-08 61.6 107 38.3
C08p00400 Brassica napus HOM05D004536 ORTHO05D005628 8.9e-08 61.6 71 45.1
C08p53070 Brassica napus HOM05D004536 ORTHO05D005628 8.9e-08 61.6 107 38.3
BolC8t46839H Brassica oleracea HOM05D004536 ORTHO05D005628 8.9e-08 61.6 71 45.1
BraA09t42188Z Brassica rapa HOM05D004536 ORTHO05D005628 8.9e-08 61.6 107 38.3
Thhalv10007445m.g Eutrema salsugineum HOM05D004536 ORTHO05D005628 8.9e-08 61.6 71 45.1
THA.LOC104801260 Tarenaya hassleriana HOM05D004536 ORTHO05D005628 8.9e-08 61.6 71 42.3
vmacro14989 Vaccinium macrocarpon HOM05D004536 ORTHO05D005628 1.2e-07 61.2 65 44.6
AagrBONN_evm.TU.Sc2ySwM_362.1715 Anthoceros agrestis HOM05D004536 ORTHO05D005628 1.5e-07 60.8 102 36.3
Carub.0001s0210 Capsella rubella HOM05D004536 ORTHO05D005628 2.0e-07 60.5 71 45.1
Carub.0033s0002 Capsella rubella HOM05D004536 ORTHO05D005628 2.0e-07 60.5 71 45.1
VMungo0540G1844 Vigna mungo HOM05D004536 ORTHO05D005628 2.0e-07 60.5 105 34.3
Aa31LG1G9600 Aethionema arabicum HOM05D004536 ORTHO05D005628 3.4e-07 59.7 71 43.7
ATR0598G141 Amborella trichopoda HOM05D004536 ORTHO05D005628 5.8e-07 58.9 111 35.1
EL10Ac8g19779 Beta vulgaris HOM05D004536 ORTHO05D005628 5.8e-07 58.9 73 38.4
Os02g0135300 Oryza sativa ssp. japonica HOM05D004536 ORTHO05D005628 5.8e-07 58.9 45 55.6
Zm00001eb209170 Zea mays HOM05D004536 ORTHO05D005628 5.8e-07 58.9 51 49.0
CBR_g44348 Chara braunii HOM05D004536 ORTHO05D005628 7.5e-07 58.5 81 43.2
AL1G12410 Arabidopsis lyrata HOM05D004536 ORTHO05D005628 9.8e-07 58.2 73 42.5
Eucgr.H01185 Eucalyptus grandis HOM05D004536 ORTHO05D005628 9.8e-07 58.2 71 43.7
AT1G02970 Arabidopsis thaliana HOM05D004536 ORTHO05D005628 1.3e-06 57.8 73 42.5
HPP92_016114 Vanilla planifolia HOM05D000084 ORTHO05D000363 1.3e-06 57.8 165 27.9
RcHm_v2.0_Chr2g0102471 Rosa chinensis HOM05D003486 ORTHO05D021574 1.7e-06 57.4 79 34.2
AUR62033185 Chenopodium quinoa HOM05D004536 ORTHO05D005628 6.4e-06 55.5 83 34.9
Prupe.7G151400 Prunus persica HOM05D003486 ORTHO05D004600 6.4e-06 55.5 83 36.1
SMO332G0028 Selaginella moellendorffii HOM05D027696 ORTHO05D374974 6.4e-06 55.5 59 55.9
Haze_04870 Corylus avellana HOM05D004536 ORTHO05D005628 8.3e-06 55.1 57 49.1
FAN15G2314 Fragaria x ananassa HOM05D004536 ORTHO05D005628 8.3e-06 55.1 50 50.0


User provided reference genes

Program Settings