Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 3.1e-254 881.3 458 100.0
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 5.2e-164 581.6 463 62.6
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 7.7e-144 514.6 501 53.1
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 1.1e-142 510.8 478 55.2
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 4.6e-128 462.2 455 51.4
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 2.3e-127 459.9 455 51.2
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 2.5e-126 456.4 456 50.2
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 4.7e-125 452.2 456 50.0
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 1.1e-124 451.1 455 50.3
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 3.1e-124 449.5 455 50.1
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 4.0e-124 449.1 455 49.7
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 8.9e-124 448.0 456 49.6
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 1.2e-123 447.6 455 50.3
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 1.5e-123 447.2 457 49.9
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 1.5e-123 447.2 464 48.9
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 2.6e-123 446.4 456 50.2
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 3.4e-123 446.0 455 49.9
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 3.4e-123 446.0 454 50.0
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 3.4e-123 446.0 455 49.0
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 5.8e-123 445.3 457 49.9
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 5.8e-123 445.3 456 50.4
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 7.5e-123 444.9 455 49.2
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 7.5e-123 444.9 456 49.3
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 7.5e-123 444.9 455 50.5
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 9.8e-123 444.5 455 50.1
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 9.8e-123 444.5 464 49.1
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 2.2e-122 443.4 455 49.5
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 2.2e-122 443.4 458 50.2
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 2.9e-122 443.0 456 49.3
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 2.9e-122 443.0 457 49.9
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 4.9e-122 442.2 457 48.8
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 6.4e-122 441.8 457 49.5
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 6.4e-122 441.8 464 48.7
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 8.3e-122 441.4 456 48.7
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 8.3e-122 441.4 455 49.2
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 1.1e-121 441.0 455 48.8
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 1.1e-121 441.0 456 49.1
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 1.4e-121 440.7 455 49.7
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 1.4e-121 440.7 455 48.6
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 1.4e-121 440.7 456 50.4
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 1.9e-121 440.3 456 49.8
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 1.9e-121 440.3 455 48.8
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 1.9e-121 440.3 455 48.8
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 1.9e-121 440.3 455 48.8
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 3.2e-121 439.5 456 49.6
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 3.2e-121 439.5 455 50.1
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 5.4e-121 438.7 455 48.6
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 5.4e-121 438.7 459 50.3
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 5.4e-121 438.7 455 49.0
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 7.0e-121 438.3 455 49.7
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 7.0e-121 438.3 443 49.4
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 9.2e-121 438.0 456 49.3
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 1.2e-120 437.6 456 49.1
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 1.2e-120 437.6 456 49.1
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 1.6e-120 437.2 456 49.1
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 1.6e-120 437.2 456 49.6
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 2.0e-120 436.8 455 48.8
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 2.0e-120 436.8 457 48.8
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 2.7e-120 436.4 457 49.0
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 2.7e-120 436.4 457 49.0
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.7e-120 436.4 456 49.3
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.7e-120 436.4 456 49.1
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 3.5e-120 436.0 457 49.2
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 3.5e-120 436.0 456 49.3
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 6.0e-120 435.3 457 49.0
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 6.0e-120 435.3 457 48.8
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 7.8e-120 434.9 457 48.8
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 1.0e-119 434.5 456 49.3
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 1.3e-119 434.1 457 49.0
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 1.3e-119 434.1 457 49.0
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 1.3e-119 434.1 457 49.0
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 1.3e-119 434.1 456 48.7
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 1.3e-119 434.1 455 49.0
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 2.3e-119 433.3 457 49.0
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 3.0e-119 433.0 457 48.6
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 3.0e-119 433.0 456 48.9
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 3.9e-119 432.6 456 48.9
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 3.9e-119 432.6 456 47.6
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 3.9e-119 432.6 498 42.6
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 5.0e-119 432.2 456 48.2
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 5.0e-119 432.2 455 48.6
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 8.6e-119 431.4 456 48.0
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 1.1e-118 431.0 455 48.8
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 1.5e-118 430.6 456 48.9
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 1.5e-118 430.6 457 47.3
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 1.5e-118 430.6 458 47.6
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 3.3e-118 429.5 458 47.6
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 4.3e-118 429.1 455 48.8
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 5.6e-118 428.7 456 48.0
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 7.3e-118 428.3 456 48.0
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 7.3e-118 428.3 457 48.6
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 7.3e-118 428.3 456 48.7
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 1.2e-117 427.6 456 48.5
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 1.2e-117 427.6 457 48.1
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 1.2e-117 427.6 458 47.2
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 1.6e-117 427.2 457 47.7
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 2.1e-117 426.8 457 48.6
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 2.8e-117 426.4 457 47.9
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 3.6e-117 426.0 461 47.1
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 6.2e-117 425.2 457 47.5
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 8.1e-117 424.9 458 47.2
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 1.4e-116 424.1 449 48.3
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 1.8e-116 423.7 457 47.7
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 3.1e-116 422.9 427 50.1
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 8.9e-116 421.4 457 47.5
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 4.4e-115 419.1 458 47.2
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 5.8e-115 418.7 458 47.2
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 6.4e-114 415.2 461 46.0
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 7.1e-113 411.8 458 46.5
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 1.3e-111 407.5 441 47.8
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 1.7e-111 407.1 443 47.2
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 6.6e-111 405.2 457 44.9
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 1.1e-110 404.4 455 46.6
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 5.6e-110 402.1 457 44.2
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 5.6e-110 402.1 459 45.1
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.6e-109 400.6 456 46.5
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 5.8e-107 392.1 456 45.0
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 9.2e-105 384.8 460 45.0
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 3.6e-101 372.9 457 45.3
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 7.6e-99 365.2 457 44.4
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 6.4e-98 362.1 378 48.4
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 3.5e-96 356.3 378 46.8
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 5.1e-95 352.4 378 46.6
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 1.5e-94 350.9 393 46.3
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 9.6e-94 348.2 370 47.0
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 6.9e-92 342.0 378 46.3
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 8.7e-87 325.1 353 46.7
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 1.1e-86 324.7 456 41.7
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 3.1e-84 316.6 354 46.6
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 3.0e-79 300.1 310 48.1
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 1.5e-70 271.2 284 49.3
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 1.2e-56 224.9 216 51.9
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 2.0e-43 181.0 196 46.4
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 2.8e-37 160.6 173 48.6
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 6.3e-37 159.5 151 52.3
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 5.3e-36 156.4 177 44.1
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 2.0e-35 154.5 172 46.5
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.6e-32 144.8 124 57.3
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 2.0e-22 111.3 161 36.0
Cre06.g251650 Chlamydomonas reinhardtii HOM05D004898 ORTHO05D005574 1.8e-20 104.8 483 25.7
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 5.0e-18 96.7 74 62.2
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 1.1e-17 95.5 74 63.5
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 7.3e-17 92.8 74 60.8
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 9.5e-17 92.4 92 52.2
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 9.5e-17 92.4 110 45.5
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 1.6e-16 91.7 460 26.7
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 6.1e-16 89.7 150 34.7
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 4.1e-12 77.0 95 42.1
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 1.7e-10 71.6 69 52.2
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 1.7e-10 71.6 69 52.2
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 5.0e-10 70.1 71 54.9
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 4.3e-09 67.0 65 55.4


User provided reference genes

Program Settings