Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO270G0087 Selaginella moellendorffii HOM05D007145 ORTHO05D008952 4.2e-66 256.9 122 100.0
SMO367G1176 Selaginella moellendorffii HOM05D009701 ORTHO05D000003 7.5e-15 86.7 117 35.9
SMO143G0105 Selaginella moellendorffii HOM05D017046 ORTHO05D010847 8.3e-14 83.2 120 35.8
HanXRQChr13g0394161 Helianthus annuus HOM05D007145 ORTHO05D008952 3.3e-10 71.2 104 35.6
SMO203G0052 Selaginella moellendorffii HOM05D005973 ORTHO05D038438 4.3e-10 70.9 98 36.7
Lsat_1_v5_gn_6_5460 Lactuca sativa HOM05D007145 ORTHO05D008952 2.1e-09 68.6 109 33.9
A01p25200 Brassica napus HOM05D007409 ORTHO05D009264 3.6e-09 67.8 121 34.7
BraA01t02429Z Brassica rapa HOM05D007409 ORTHO05D009264 3.6e-09 67.8 121 34.7
BcaC09g49905 Brassica carinata HOM05D007409 ORTHO05D009264 4.7e-09 67.4 121 34.7
BolC1t03079H Brassica oleracea HOM05D007409 ORTHO05D009264 4.7e-09 67.4 121 34.7
TPR.G28018 Trifolium pratense HOM05D007145 ORTHO05D008952 4.7e-09 67.4 103 35.0
C01p31450 Brassica napus HOM05D007409 ORTHO05D009264 6.1e-09 67.0 121 33.9
ECA233G6190 Erigeron canadensis HOM05D007145 ORTHO05D008952 1.4e-08 65.9 104 32.7
Medtr6g075180 Medicago truncatula HOM05D007145 ORTHO05D008952 1.4e-08 65.9 111 32.4
Psat6g071360 Pisum sativum HOM05D007145 ORTHO05D008952 1.4e-08 65.9 113 32.7
Haze_18964 Corylus avellana HOM05D007145 ORTHO05D008952 1.8e-08 65.5 111 32.4
Lalb_Chr24g0398401 Lupinus albus HOM05D007145 ORTHO05D008952 1.8e-08 65.5 116 32.8
PSO210G6432 Papaver somniferum HOM05D007155 ORTHO05D003034 1.8e-08 65.5 98 34.7
PSO832G3824 Papaver somniferum HOM05D007155 ORTHO05D003034 1.8e-08 65.5 75 44.0
Cpa.g.sc7.128 Carica papaya HOM05D007145 ORTHO05D008952 3.1e-08 64.7 111 31.5
CDE02G3157 Ceratophyllum demersum HOM05D007145 ORTHO05D008952 3.1e-08 64.7 117 30.8
Ca_23675_v3 Cicer arietinum L. HOM05D007145 ORTHO05D008952 3.1e-08 64.7 103 34.0
PSO063G3107 Papaver somniferum HOM05D007145 ORTHO05D008952 3.1e-08 64.7 103 33.0
Atru.chr5.2337 Acer truncatum HOM05D007145 ORTHO05D008952 4.0e-08 64.3 111 33.3
Glyma.16G218600 Glycine max HOM05D007145 ORTHO05D008952 4.0e-08 64.3 104 32.7
Peaxi162Scf00126g00029 Petunia axillaris HOM05D007145 ORTHO05D008952 4.0e-08 64.3 111 31.5
BcaB05g22985 Brassica carinata HOM05D007409 ORTHO05D009264 5.2e-08 63.9 118 33.1
arahy.Tifrunner.gnm1.ann1.H7AU2Q Arachis hypogaea HOM05D007145 ORTHO05D008952 6.8e-08 63.5 104 33.7
BcaB05g22690 Brassica carinata HOM05D000162 ORTHO05D000003 6.8e-08 63.5 106 34.0
Cc04_g09240 Coffea canephora HOM05D007145 ORTHO05D008952 8.9e-08 63.2 110 32.7
Sc04g0003910 Simmondsia chinensis HOM05D007145 ORTHO05D008952 8.9e-08 63.2 104 32.7
AT3G48810 Arabidopsis thaliana HOM05D007409 ORTHO05D009264 1.5e-07 62.4 117 33.3
RcHm_v2.0_Chr7g0177611 Rosa chinensis HOM05D007145 ORTHO05D008952 1.5e-07 62.4 104 33.7
Duzib205G0762 Durio zibethinus HOM05D007145 ORTHO05D008952 3.4e-07 61.2 100 33.0
Thhalv10010184m.g Eutrema salsugineum HOM05D007409 ORTHO05D009264 3.4e-07 61.2 120 31.7
Lsat_1_v5_gn_9_88941 Lactuca sativa HOM05D003039 ORTHO05D008410 4.4e-07 60.8 119 34.5
SGA_v2.0_scaffold120G32959 Striga asiatica HOM05D007145 ORTHO05D008952 4.4e-07 60.8 103 35.0
TAR633G1464 Trochodendron aralioides HOM05D003039 ORTHO05D008410 4.4e-07 60.8 115 33.9
Os01g0747600 Oryza sativa ssp. japonica HOM05D007402 ORTHO05D003673 5.8e-07 60.5 125 32.0
CDE02G3715 Ceratophyllum demersum HOM05D002444 ORTHO05D009235 7.5e-07 60.1 98 35.7
Duzib147G0014 Durio zibethinus HOM05D006414 ORTHO05D007780 7.5e-07 60.1 104 28.8
Phvul.001G095200 Phaseolus vulgaris HOM05D000424 ORTHO05D008586 7.5e-07 60.1 106 34.0
SGA_v2.0_scaffold8G04573 Striga asiatica HOM05D000424 ORTHO05D002854 7.5e-07 60.1 110 31.8
VMungo1215G2887 Vigna mungo HOM05D000879 ORTHO05D002043 7.5e-07 60.1 106 34.0
Hma1.2p1_0314F.1_g121750 Hydrangea macrophylla HOM05D006842 ORTHO05D008908 9.8e-07 59.7 94 31.9
Sc11g0000690 Simmondsia chinensis HOM05D000424 ORTHO05D008586 9.8e-07 59.7 106 33.0
TAR626G0090 Trochodendron aralioides HOM05D006842 ORTHO05D008908 9.8e-07 59.7 96 34.4
Zm00001eb255530 Zea mays HOM05D007145 ORTHO05D008952 9.8e-07 59.7 98 30.6
Atru.BG.180.p Acer truncatum HOM05D006503 ORTHO05D008116 1.3e-06 59.3 99 38.4
Oeu034452.1 Olea europaea HOM05D007145 ORTHO05D008952 1.3e-06 59.3 103 31.1
Atru.BG.118.p Acer truncatum HOM05D007402 ORTHO05D003673 1.7e-06 58.9 112 36.6
QL01p037328 Quercus lobata HOM05D007402 ORTHO05D003673 1.7e-06 58.9 112 33.9
CANSAT01G1305 Cannabis sativa HOM05D002444 ORTHO05D009235 2.2e-06 58.5 92 34.8
AUR62024165 Chenopodium quinoa HOM05D000424 ORTHO05D008586 2.2e-06 58.5 106 35.8
Medtr3g023180 Medicago truncatula HOM05D005973 ORTHO05D007285 2.2e-06 58.5 115 28.7
SGA_v2.0_scaffold16G07750 Striga asiatica HOM05D000001 ORTHO05D000003 2.2e-06 58.5 110 31.8
Zm00001eb153040 Zea mays HOM05D007402 ORTHO05D003673 2.2e-06 58.5 122 32.0
DCAR_020473 Daucus carota HOM05D006842 ORTHO05D008908 2.9e-06 58.2 95 32.6
Hma1.2p1_0856F.1_g229090 Hydrangea macrophylla HOM05D000424 ORTHO05D008586 2.9e-06 58.2 106 33.0
SMO270G0123 Selaginella moellendorffii HOM05D000001 ORTHO05D376091 2.9e-06 58.2 64 43.8
VMungo1383G3318 Vigna mungo HOM05D000855 ORTHO05D019456 2.9e-06 58.2 104 32.7
EL10Ac8g20438 Beta vulgaris HOM05D002986 ORTHO05D007611 3.7e-06 57.8 111 30.6
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 3.7e-06 57.8 71 35.2
Nn3g18985 Nelumbo nucifera HOM05D006156 ORTHO05D007699 3.7e-06 57.8 104 30.8
Haze_23904 Corylus avellana HOM05D007402 ORTHO05D003673 4.9e-06 57.4 112 33.0
HanXRQChr06g0172221 Helianthus annuus HOM05D007486 ORTHO05D003673 4.9e-06 57.4 116 30.2
PGR119G1668 Punica granatum HOM05D000424 ORTHO05D008586 4.9e-06 57.4 105 32.4
THA.LOC104805256 Tarenaya hassleriana HOM05D000424 ORTHO05D008586 4.9e-06 57.4 121 33.1
TWI60G1155 Tripterygium wilfordii HOM05D007145 ORTHO05D008952 4.9e-06 57.4 92 32.6
CSS0034881 Camellia sinensis var. sinensis HOM05D000121 ORTHO05D000102 6.4e-06 57.0 106 34.9
Dinv32060 Davidia involucrata HOM05D005973 ORTHO05D007285 6.4e-06 57.0 115 28.7
FAN21G0605 Fragaria x ananassa HOM05D007212 ORTHO05D009094 6.4e-06 57.0 102 28.4
MD03G1231900 Malus domestica HOM05D000424 ORTHO05D000355 6.4e-06 57.0 115 29.6
Psat3g196640 Pisum sativum HOM05D003039 ORTHO05D008410 6.4e-06 57.0 107 33.6
Sed0028237 Sechium edule HOM05D000424 ORTHO05D008586 6.4e-06 57.0 112 33.0
TWI63G1417 Tripterygium wilfordii HOM05D000891 ORTHO05D000761 6.4e-06 57.0 104 29.8
TAR633G2543 Trochodendron aralioides HOM05D007145 ORTHO05D008952 6.4e-06 57.0 91 31.9
A08p01630 Brassica napus HOM05D002453 ORTHO05D008746 8.3e-06 56.6 107 30.8
BraA08t32216Z Brassica rapa HOM05D002453 ORTHO05D008746 8.3e-06 56.6 107 30.8
CSS0001753 Camellia sinensis var. sinensis HOM05D000121 ORTHO05D000102 8.3e-06 56.6 106 34.9
Cpa.g.sc8.109 Carica papaya HOM05D007486 ORTHO05D003673 8.3e-06 56.6 115 30.4
Cfa011358 Carpinus fangiana HOM05D007402 ORTHO05D003673 8.3e-06 56.6 112 32.1
Ciclev10031257m.g Citrus clementina HOM05D000424 ORTHO05D008586 8.3e-06 56.6 106 33.0
Potri.001G236800 Populus trichocarpa HOM05D007212 ORTHO05D009094 8.3e-06 56.6 100 26.0
SEGI_29272 Sequoiadendron giganteum HOM05D007291 ORTHO05D009038 8.3e-06 56.6 81 39.5


User provided reference genes

Program Settings