Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO269G0021 Selaginella moellendorffii HOM05D004897 ORTHO05D005928 4.4e-243 844.3 474 100.0
BraA06t24553Z Brassica rapa HOM05D004897 ORTHO05D005928 1.3e-21 108.6 539 28.9
A06p14220 Brassica napus HOM05D004897 ORTHO05D005928 1.1e-20 105.5 539 28.6
AagrBONN_evm.TU.Sc2ySwM_344.4779 Anthoceros agrestis HOM05D004897 ORTHO05D005928 1.9e-20 104.8 232 37.9
AT1G18190 Arabidopsis thaliana HOM05D004897 ORTHO05D005928 2.5e-20 104.4 554 27.3
BcaC07g38902 Brassica carinata HOM05D004897 ORTHO05D005928 4.3e-20 103.6 466 28.1
BcaB07g31825 Brassica carinata HOM05D004897 ORTHO05D005928 1.6e-19 101.7 530 28.9
Sc10g0009320 Simmondsia chinensis HOM05D004897 ORTHO05D005928 2.8e-19 100.9 224 36.2
Gohir.A12G268700 Gossypium hirsutum HOM05D004897 ORTHO05D005928 6.1e-19 99.8 229 36.7
Hma1.2p1_0669F.1_g200180 Hydrangea macrophylla HOM05D004897 ORTHO05D005928 8.0e-19 99.4 226 35.4
QL10p028331 Quercus lobata HOM05D004897 ORTHO05D005928 8.0e-19 99.4 566 26.1
Eucgr.B00942 Eucalyptus grandis HOM05D004897 ORTHO05D005928 1.4e-18 98.6 231 36.8
BolC5t30347H Brassica oleracea HOM05D004897 ORTHO05D005928 2.3e-18 97.8 541 27.9
ECA233G2541 Erigeron canadensis HOM05D004897 ORTHO05D005928 2.3e-18 97.8 512 27.1
Thecc.03G053700 Theobroma cacao HOM05D004897 ORTHO05D005928 2.3e-18 97.8 234 36.3
C05p16500 Brassica napus HOM05D004897 ORTHO05D005928 3.1e-18 97.4 540 28.0
Thhalv10007004m.g Eutrema salsugineum HOM05D004897 ORTHO05D005928 6.8e-18 96.3 573 26.4
Ciclev10007731m.g Citrus clementina HOM05D004897 ORTHO05D005928 8.9e-18 95.9 541 28.1
QL10p028216 Quercus lobata HOM05D004897 ORTHO05D005928 8.9e-18 95.9 566 26.0
HPP92_013368 Vanilla planifolia HOM05D004897 ORTHO05D005928 1.2e-17 95.5 507 28.6
MD14G1235400 Malus domestica HOM05D004897 ORTHO05D005928 1.5e-17 95.1 578 27.3
A08p30510 Brassica napus HOM05D004897 ORTHO05D005928 2.6e-17 94.4 517 28.4
AL1G30560 Arabidopsis lyrata HOM05D004897 ORTHO05D005928 4.4e-17 93.6 555 25.9
Carub.0001s1783 Capsella rubella HOM05D004897 ORTHO05D005928 4.4e-17 93.6 554 27.3
THA.LOC104812165 Tarenaya hassleriana HOM05D004897 ORTHO05D005928 4.4e-17 93.6 565 26.7
BcaC05g25714 Brassica carinata HOM05D004897 ORTHO05D005928 7.5e-17 92.8 218 34.9
Dinv18253 Davidia involucrata HOM05D004897 ORTHO05D005928 9.8e-17 92.4 241 33.2
Lalb_Chr05g0221751 Lupinus albus HOM05D004897 ORTHO05D005928 9.8e-17 92.4 572 26.2
Prupe.5G232100 Prunus persica HOM05D004897 ORTHO05D005928 1.3e-16 92.0 233 34.3
Rhsim12G0138900 Rhododendron simsii HOM05D004897 ORTHO05D005928 1.3e-16 92.0 232 34.1
Sabra15G0057300 Salix brachista HOM05D004897 ORTHO05D005928 2.9e-16 90.9 225 33.8
TWI60G0918 Tripterygium wilfordii HOM05D004897 ORTHO05D005928 3.7e-16 90.5 231 33.3
TAR622G0961 Trochodendron aralioides HOM05D004897 ORTHO05D005928 3.7e-16 90.5 235 32.8
Gohir.A09G175700 Gossypium hirsutum HOM05D004897 ORTHO05D005928 4.9e-16 90.1 235 34.9
MD06G1230800 Malus domestica HOM05D004897 ORTHO05D005928 4.9e-16 90.1 580 25.9
Cpa.g.sc3.408 Carica papaya HOM05D004897 ORTHO05D005928 6.4e-16 89.7 230 33.0
Sp1g16170 Schrenkiella parvula HOM05D004897 ORTHO05D005928 8.3e-16 89.4 553 27.7
Mapoly0056s0112 Marchantia polymorpha HOM05D004897 ORTHO05D005928 1.9e-15 88.2 227 36.6
Aqoxy3G00106 Aquilegia oxysepala HOM05D004897 ORTHO05D005928 2.4e-15 87.8 564 27.1
Glyma.08G053300 Glycine max HOM05D004897 ORTHO05D005928 2.4e-15 87.8 585 25.5
Nn4g24194 Nelumbo nucifera HOM05D004897 ORTHO05D005928 3.2e-15 87.4 231 32.5
CSS0030961 Camellia sinensis var. sinensis HOM05D004897 ORTHO05D005928 5.4e-15 86.7 230 34.3
AUR62042935 Chenopodium quinoa HOM05D004897 ORTHO05D005928 7.0e-15 86.3 492 26.4
Pp3c2_5550 Physcomitrium patens HOM05D004897 ORTHO05D005928 7.0e-15 86.3 230 34.3
MSTRG.4571 Avicennia marina HOM05D004897 ORTHO05D005928 9.2e-15 85.9 228 31.6
DCAR_014009 Daucus carota HOM05D004897 ORTHO05D005928 2.7e-14 84.3 230 32.6
FAN04G2242 Fragaria x ananassa HOM05D004897 ORTHO05D005928 2.7e-14 84.3 582 26.3
HanXRQChr08g0227441 Helianthus annuus HOM05D004897 ORTHO05D005928 2.7e-14 84.3 544 25.9
Oeu014377.2 Olea europaea HOM05D004897 ORTHO05D005928 2.7e-14 84.3 551 26.3
Haze_18817 Corylus avellana HOM05D004897 ORTHO05D005928 4.6e-14 83.6 185 34.6
Lsat_1_v5_gn_8_144040 Lactuca sativa HOM05D004897 ORTHO05D005928 4.6e-14 83.6 548 26.1
Aa31LG7G2880 Aethionema arabicum HOM05D004897 ORTHO05D005928 7.8e-14 82.8 587 24.7
Medtr8g107060 Medicago truncatula HOM05D004897 ORTHO05D005928 7.8e-14 82.8 554 24.7
RcHm_v2.0_Chr7g0178571 Rosa chinensis HOM05D004897 ORTHO05D005928 7.8e-14 82.8 583 27.3
Cfa019677 Carpinus fangiana HOM05D004897 ORTHO05D005928 1.0e-13 82.4 579 26.1
FAN13G1819 Fragaria x ananassa HOM05D004897 ORTHO05D005928 1.3e-13 82.0 585 26.7
Migut.D01558 Erythranthe guttata HOM05D004897 ORTHO05D005928 2.3e-13 81.3 564 25.5
PSO017G1741 Papaver somniferum HOM05D004897 ORTHO05D005928 2.3e-13 81.3 584 27.2
Duzib084G0246 Durio zibethinus HOM05D004897 ORTHO05D005928 3.9e-13 80.5 587 26.4
Lj9C421G3 Lonicera japonica HOM05D004897 ORTHO05D005928 3.9e-13 80.5 535 24.9
Actinidia35124 Actinidia chinensis HOM05D004897 ORTHO05D005928 5.0e-13 80.1 227 31.7
Lj4g0010445 Lotus japonicus HOM05D004897 ORTHO05D005928 8.6e-13 79.3 552 25.7
Cc04_g06380 Coffea canephora HOM05D004897 ORTHO05D005928 1.1e-12 79.0 569 25.0
FAN18G0124 Fragaria x ananassa HOM05D004897 ORTHO05D005928 1.5e-12 78.6 585 27.0
CDE05G2998 Ceratophyllum demersum HOM05D004897 ORTHO05D005928 1.9e-12 78.2 561 25.5
Psat7g002120 Pisum sativum HOM05D004897 ORTHO05D005928 1.9e-12 78.2 595 25.7
SalBow1G4576 Salvia bowleyana HOM05D004897 ORTHO05D005928 2.5e-12 77.8 568 24.1
CiPaw.15G140900 Carya illinoinensis HOM05D004897 ORTHO05D005928 4.3e-12 77.0 588 25.7
BraA08t34983Z Brassica rapa HOM05D004897 ORTHO05D005928 5.6e-12 76.6 307 29.0
Glyma.05G244800 Glycine max HOM05D004897 ORTHO05D005928 5.6e-12 76.6 570 26.5
PSO478G0546 Papaver somniferum HOM05D004897 ORTHO05D005928 5.6e-12 76.6 547 26.7
Gorai.008G289400 Gossypium raimondii HOM05D004897 ORTHO05D005928 7.3e-12 76.3 602 26.1
MBI12_g30398_MAGBIO Magnolia biondii HOM05D004897 ORTHO05D005928 7.3e-12 76.3 563 26.5
Actinidia18901 Actinidia chinensis HOM05D004897 ORTHO05D005928 9.5e-12 75.9 588 26.4
SGA_v2.0_scaffold168G38498 Striga asiatica HOM05D004897 ORTHO05D005928 9.5e-12 75.9 575 24.9
COL.COLO4_16135 Corchorus olitorius HOM05D004897 ORTHO05D005928 1.2e-11 75.5 572 25.9
Lalb_Chr16g0387081 Lupinus albus HOM05D004897 ORTHO05D005928 1.6e-11 75.1 560 24.6
PGSC0003DMG400005743 Solanum tuberosum HOM05D004897 ORTHO05D005928 2.1e-11 74.7 592 26.2
C08p18450 Brassica napus HOM05D004897 ORTHO05D005928 2.8e-11 74.3 309 29.1
CsaV3_1G004270 Cucumis sativus L. HOM05D004897 ORTHO05D005928 2.8e-11 74.3 584 26.7
Gohir.D12G269100 Gossypium hirsutum HOM05D004897 ORTHO05D005928 2.8e-11 74.3 602 25.9
Potri.015G039800 Populus trichocarpa HOM05D004897 ORTHO05D005928 3.6e-11 73.9 584 24.5
Phvul.002G329100 Phaseolus vulgaris HOM05D004897 ORTHO05D005928 4.7e-11 73.6 588 24.0
TPR.G1406 Trifolium pratense HOM05D004897 ORTHO05D005928 8.0e-11 72.8 577 25.0
Os04g0652500 Oryza sativa ssp. japonica HOM05D004897 ORTHO05D005928 1.8e-10 71.6 204 30.9
Peaxi162Scf00683g00441 Petunia axillaris HOM05D004897 ORTHO05D005928 1.8e-10 71.6 177 33.3
Sed0018128 Sechium edule HOM05D004897 ORTHO05D005928 1.8e-10 71.6 181 33.7
VMungo0251G1788 Vigna mungo HOM05D004897 ORTHO05D005928 1.8e-10 71.6 593 23.9
Ah.11g045250 Amaranthus hybridus HOM05D004897 ORTHO05D005928 2.3e-10 71.2 549 23.5
BcaNung05436 Brassica carinata HOM05D004897 ORTHO05D005928 2.3e-10 71.2 181 33.7
Manes.14G170400 Manihot esculenta HOM05D004897 ORTHO05D005928 3.1e-10 70.9 590 26.8
TWI81G0456 Tripterygium wilfordii HOM05D004897 ORTHO05D005928 4.0e-10 70.5 586 23.9
CAN.G1129.49 Capsicum annuum HOM05D004897 ORTHO05D005928 5.2e-10 70.1 583 25.2
Zm00001eb068130 Zea mays HOM05D004897 ORTHO05D005928 5.2e-10 70.1 456 27.0
FAN08G3076 Fragaria x ananassa HOM05D004897 ORTHO05D005928 1.5e-09 68.6 586 25.8
Hund02326 Selenicereus undatus HOM05D004897 ORTHO05D005928 3.4e-09 67.4 398 25.1
ClCG06G014390 Citrullus lanatus HOM05D004897 ORTHO05D005928 5.8e-09 66.6 582 25.9
PGR083G0946 Punica granatum HOM05D004897 ORTHO05D005928 5.8e-09 66.6 170 34.7
Ca_17200_v3 Cicer arietinum L. HOM05D004897 ORTHO05D005928 4.9e-08 63.5 582 25.3
ATR1102G065 Amborella trichopoda HOM05D004897 ORTHO05D005928 1.4e-07 62.0 111 39.6
Nitab4.5_0006894g0040 Nicotiana tabacum HOM05D004897 ORTHO05D005928 2.4e-07 61.2 616 24.4
FvH4_5g17221 Fragaria vesca HOM05D004897 ORTHO05D005928 4.1e-07 60.5 573 25.7
CARHR018770 Cardamine hirsuta HOM05D004897 ORTHO05D005928 9.2e-07 59.3 421 23.0
Zm00001eb371090 Zea mays HOM05D004485 ORTHO05D005485 4.6e-06 57.0 219 28.8
arahy.Tifrunner.gnm1.ann1.QTT902 Arachis hypogaea HOM05D004897 ORTHO05D005928 6.0e-06 56.6 603 24.2
arahy.Tifrunner.gnm1.ann1.Y8NJDB Arachis hypogaea HOM05D004897 ORTHO05D005928 7.8e-06 56.2 605 24.0
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 7.8e-06 56.2 190 28.4
Zm00001eb072950 Zea mays HOM05D004897 ORTHO05D005928 7.8e-06 56.2 90 40.0


User provided reference genes

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