Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 1.8e-147 526.2 326 100.0
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 4.2e-43 179.5 268 42.2
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 5.5e-43 179.1 167 58.1
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 3.9e-41 172.9 117 72.6
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 1.5e-40 171.0 262 43.5
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 1.5e-40 171.0 158 57.6
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 1.9e-40 170.6 134 63.4
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 1.9e-40 170.6 124 67.7
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 4.3e-40 169.5 125 68.0
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 5.7e-40 169.1 276 42.4
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 5.7e-40 169.1 267 43.8
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 9.7e-40 168.3 131 64.9
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 9.7e-40 168.3 296 49.3
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 1.7e-39 167.5 130 66.2
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 2.2e-39 167.2 267 41.2
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 2.2e-39 167.2 144 61.1
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 2.2e-39 167.2 144 61.1
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 2.8e-39 166.8 269 41.6
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 3.7e-39 166.4 165 56.4
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 3.7e-39 166.4 163 57.1
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 3.7e-39 166.4 127 66.1
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 3.7e-39 166.4 127 66.1
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 4.8e-39 166.0 301 39.9
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 4.8e-39 166.0 281 39.9
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 4.8e-39 166.0 131 65.6
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 4.8e-39 166.0 271 41.3
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 6.3e-39 165.6 131 64.1
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 8.2e-39 165.2 118 68.6
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 8.2e-39 165.2 174 55.7
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 1.1e-38 164.9 135 63.0
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 1.4e-38 164.5 130 66.2
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 1.4e-38 164.5 120 67.5
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 1.4e-38 164.5 120 67.5
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 1.4e-38 164.5 172 54.1
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 1.8e-38 164.1 136 61.8
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 1.8e-38 164.1 166 56.0
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 1.8e-38 164.1 148 58.1
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 2.4e-38 163.7 118 67.8
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 2.4e-38 163.7 261 40.6
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 3.1e-38 163.3 116 70.7
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 3.1e-38 163.3 132 61.4
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 4.1e-38 162.9 262 43.9
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 4.1e-38 162.9 126 64.3
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 5.3e-38 162.5 166 54.8
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 5.3e-38 162.5 144 59.7
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 5.3e-38 162.5 165 53.9
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 6.9e-38 162.2 277 42.2
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 6.9e-38 162.2 128 64.8
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 6.9e-38 162.2 137 64.2
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 6.9e-38 162.2 274 41.6
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 9.1e-38 161.8 169 55.6
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 9.1e-38 161.8 280 39.3
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 1.2e-37 161.4 129 62.8
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 1.5e-37 161.0 264 41.3
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 1.5e-37 161.0 134 60.4
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 1.5e-37 161.0 271 40.6
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 2.6e-37 160.2 303 40.3
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 2.6e-37 160.2 165 56.4
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 2.6e-37 160.2 169 52.7
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 2.6e-37 160.2 169 52.7
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 2.6e-37 160.2 122 66.4
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 3.4e-37 159.8 276 41.3
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 3.4e-37 159.8 132 62.9
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 3.4e-37 159.8 139 63.3
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 3.4e-37 159.8 169 56.2
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 4.5e-37 159.5 266 41.0
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 5.9e-37 159.1 277 41.5
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 5.9e-37 159.1 126 62.7
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 7.7e-37 158.7 122 65.6
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 7.7e-37 158.7 291 38.1
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 7.7e-37 158.7 164 52.4
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 7.7e-37 158.7 172 51.2
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 1.0e-36 158.3 276 41.3
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 1.0e-36 158.3 116 69.8
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 1.3e-36 157.9 266 40.2
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 1.7e-36 157.5 118 68.6
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 2.2e-36 157.1 264 40.5
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 2.2e-36 157.1 133 59.4
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 2.2e-36 157.1 126 63.5
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 2.9e-36 156.8 264 41.3
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 2.9e-36 156.8 126 61.9
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 2.9e-36 156.8 126 61.9
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 2.9e-36 156.8 139 60.4
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 2.9e-36 156.8 260 42.3
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 3.8e-36 156.4 271 41.0
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 5.0e-36 156.0 272 38.2
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 5.0e-36 156.0 132 59.8
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 5.0e-36 156.0 120 65.0
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 5.0e-36 156.0 168 56.0
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 5.0e-36 156.0 270 39.6
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 6.5e-36 155.6 147 58.5
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 6.5e-36 155.6 127 62.2
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 8.5e-36 155.2 171 52.0
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 8.5e-36 155.2 269 41.6
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.1e-35 154.8 133 59.4
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 1.1e-35 154.8 137 59.1
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 1.1e-35 154.8 131 63.4
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 1.4e-35 154.5 147 56.5
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 1.9e-35 154.1 278 40.6
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 1.9e-35 154.1 143 58.0
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 4.2e-35 152.9 126 61.1
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 4.2e-35 152.9 135 59.3
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 5.5e-35 152.5 126 61.1
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 5.5e-35 152.5 171 50.9
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 5.5e-35 152.5 266 41.0
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 7.2e-35 152.1 269 39.4
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 9.4e-35 151.8 172 50.0
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 9.4e-35 151.8 126 60.3
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 2.7e-34 150.2 169 49.7
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 2.7e-34 150.2 294 45.6
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 2.7e-34 150.2 171 51.5
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 3.6e-34 149.8 266 40.2
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 3.6e-34 149.8 267 39.3
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 4.7e-34 149.4 266 40.2
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 4.7e-34 149.4 266 40.2
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 6.1e-34 149.1 267 38.2
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 6.1e-34 149.1 147 56.5
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 7.9e-34 148.7 163 53.4
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 1.0e-33 148.3 263 41.1
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 1.4e-33 147.9 129 59.7
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.4e-33 147.9 266 40.2
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 1.4e-33 147.9 266 39.1
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 3.0e-33 146.7 268 40.3
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 3.9e-33 146.4 266 39.8
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 3.9e-33 146.4 263 43.3
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.1e-32 144.8 271 37.6
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.1e-32 144.8 266 38.7
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 2.0e-32 144.1 121 59.5
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 3.3e-32 143.3 167 49.7
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 4.4e-32 142.9 297 36.7
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 1.3e-31 141.4 124 58.1
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 2.8e-31 140.2 117 65.0
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 1.8e-30 137.5 317 34.1
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 3.1e-30 136.7 267 38.2
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 7.0e-30 135.6 103 67.0
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 2.6e-29 133.7 103 64.1
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 4.5e-29 132.9 124 55.6
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 4.5e-29 132.9 129 55.0
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 4.5e-29 132.9 123 58.5
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 5.9e-29 132.5 142 48.6
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 2.2e-28 130.6 116 56.9
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 2.9e-28 130.2 144 52.1
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 2.9e-28 130.2 108 62.0
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 2.7e-26 123.6 125 54.4
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 2.7e-26 123.6 90 64.4
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.0e-25 121.7 132 51.5
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 1.0e-25 121.7 116 55.2
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 2.6e-24 117.1 238 37.4
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 4.1e-22 109.8 277 33.6
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 2.6e-21 107.1 126 48.4
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 7.7e-21 105.5 258 35.3
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 2.0e-13 80.9 77 58.4
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 5.9e-13 79.3 129 44.2


User provided reference genes

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