Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO266G0100 Selaginella moellendorffii HOM05D007528 ORTHO05D008503 4.4e-109 397.9 191 100.0
AagrBONN_evm.TU.Sc2ySwM_344.4238 Anthoceros agrestis HOM05D007528 ORTHO05D008503 7.4e-56 221.1 198 53.5
SEGI_20851 Sequoiadendron giganteum HOM05D007528 ORTHO05D008503 2.8e-55 219.2 193 52.3
Nitab4.5_0000382g0060 Nicotiana tabacum HOM05D007528 ORTHO05D008503 2.0e-53 213.0 173 55.5
Mapoly0168s0009 Marchantia polymorpha HOM05D007528 ORTHO05D008503 2.6e-53 212.6 199 52.3
Migut.J01598 Erythranthe guttata HOM05D007528 ORTHO05D008503 2.5e-51 206.1 175 53.7
MSTRG.19743 Avicennia marina HOM05D007528 ORTHO05D008503 3.2e-51 205.7 185 50.8
Duzib093G0275 Durio zibethinus HOM05D007528 ORTHO05D008503 3.2e-51 205.7 186 53.8
PSO729G0248 Papaver somniferum HOM05D007528 ORTHO05D008503 3.2e-51 205.7 183 52.5
Peaxi162Scf00183g00712 Petunia axillaris HOM05D007528 ORTHO05D008503 3.2e-51 205.7 175 54.3
TAR623G0014 Trochodendron aralioides HOM05D007528 ORTHO05D008503 5.5e-51 204.9 179 54.2
MBI13_g02396_MAGBIO Magnolia biondii HOM05D007528 ORTHO05D008503 7.1e-51 204.5 180 52.8
ATR0307G122 Amborella trichopoda HOM05D007528 ORTHO05D008503 1.6e-50 203.4 187 54.0
Lj2A414T28 Lonicera japonica HOM05D007528 ORTHO05D008503 2.7e-50 202.6 173 52.6
PGSC0003DMG400019757 Solanum tuberosum HOM05D007528 ORTHO05D008503 3.5e-50 202.2 175 52.0
Pp3c21_6860 Physcomitrium patens HOM05D007528 ORTHO05D008503 4.6e-50 201.8 195 50.8
vmacro12911 Vaccinium macrocarpon HOM05D007528 ORTHO05D008503 4.6e-50 201.8 174 53.4
Dinv14550 Davidia involucrata HOM05D007528 ORTHO05D008503 6.0e-50 201.4 171 53.2
GSVIVG01025860001 Vitis vinifera HOM05D007528 ORTHO05D008503 6.0e-50 201.4 177 54.8
COL.COLO4_08087 Corchorus olitorius HOM05D007528 ORTHO05D008503 7.9e-50 201.1 190 50.5
Manes.09G073900 Manihot esculenta HOM05D007528 ORTHO05D008503 1.0e-49 200.7 179 50.8
Solyc03g044630.2 Solanum lycopersicum HOM05D007528 ORTHO05D008503 1.3e-49 200.3 174 51.7
Eucgr.A02169 Eucalyptus grandis HOM05D007528 ORTHO05D008503 1.8e-49 199.9 183 53.0
Oeu032951.1 Olea europaea HOM05D007528 ORTHO05D008503 1.8e-49 199.9 174 48.9
QL11p009983 Quercus lobata HOM05D007528 ORTHO05D008503 1.8e-49 199.9 171 53.8
CANSAT21G0864 Cannabis sativa HOM05D007528 ORTHO05D008503 3.0e-49 199.1 175 51.4
ECA236G1579 Erigeron canadensis HOM05D007528 ORTHO05D008503 3.0e-49 199.1 190 48.4
PGR042G1749 Punica granatum HOM05D007528 ORTHO05D008503 3.9e-49 198.7 173 52.6
Thecc.05G128400 Theobroma cacao HOM05D007528 ORTHO05D008503 3.9e-49 198.7 176 51.7
Lsat_1_v5_gn_8_83941 Lactuca sativa HOM05D007528 ORTHO05D008503 6.7e-49 198.0 173 50.3
DCAR_013508 Daucus carota HOM05D007528 ORTHO05D008503 1.1e-48 197.2 187 48.1
Gohir.D01G187600 Gossypium hirsutum HOM05D007528 ORTHO05D008503 1.1e-48 197.2 183 50.8
Gohir.A01G197400 Gossypium hirsutum HOM05D007528 ORTHO05D008503 1.9e-48 196.4 183 50.8
HanXRQChr04g0125621 Helianthus annuus HOM05D007528 ORTHO05D008503 1.9e-48 196.4 182 50.5
SalBow6G5282 Salvia bowleyana HOM05D007528 ORTHO05D008503 1.9e-48 196.4 194 47.9
Cc06_g21080 Coffea canephora HOM05D007528 ORTHO05D008503 2.5e-48 196.1 183 48.6
Gorai.002G231000 Gossypium raimondii HOM05D007528 ORTHO05D008503 2.5e-48 196.1 183 50.8
SalBow6G5858 Salvia bowleyana HOM05D007528 ORTHO05D008503 2.5e-48 196.1 194 47.9
CSS0027135 Camellia sinensis var. sinensis HOM05D007528 ORTHO05D008503 3.3e-48 195.7 182 51.6
Nn7g37298 Nelumbo nucifera HOM05D007528 ORTHO05D008503 3.3e-48 195.7 189 49.7
CDE04G0261 Ceratophyllum demersum HOM05D007528 ORTHO05D008503 4.3e-48 195.3 182 50.0
Atru.chr8.936 Acer truncatum HOM05D007528 ORTHO05D008503 9.6e-48 194.1 177 53.1
Cpa.g.sc33.188 Carica papaya HOM05D007528 ORTHO05D008503 9.6e-48 194.1 166 53.0
EL10Ac5g11614 Beta vulgaris HOM05D007528 ORTHO05D008503 1.6e-47 193.4 175 51.4
Ciclev10012580m.g Citrus clementina HOM05D007528 ORTHO05D008503 2.8e-47 192.6 172 52.9
MD12G1013500 Malus domestica HOM05D007528 ORTHO05D008503 4.8e-47 191.8 182 51.6
Aqoxy2G00067 Aquilegia oxysepala HOM05D007528 ORTHO05D008503 6.3e-47 191.4 171 50.9
FvH4_1g29750 Fragaria vesca HOM05D007528 ORTHO05D008503 1.8e-46 189.9 173 52.0
Lalb_Chr22g0358311 Lupinus albus HOM05D007528 ORTHO05D008503 1.8e-46 189.9 177 50.8
ClCG10G016790 Citrullus lanatus HOM05D007528 ORTHO05D008503 2.4e-46 189.5 171 51.5
TWI63G0885 Tripterygium wilfordii HOM05D007528 ORTHO05D008503 3.1e-46 189.1 176 50.0
FAN28G2175 Fragaria x ananassa HOM05D007528 ORTHO05D008503 4.1e-46 188.7 173 52.0
THA.LOC104803254 Tarenaya hassleriana HOM05D007528 ORTHO05D008503 5.3e-46 188.3 179 50.3
Thhalv10017145m.g Eutrema salsugineum HOM05D007528 ORTHO05D008503 6.9e-46 188.0 182 51.1
Lj1g0006388 Lotus japonicus HOM05D007528 ORTHO05D008503 6.9e-46 188.0 173 49.1
Carub.0004s2343 Capsella rubella HOM05D007528 ORTHO05D008503 9.0e-46 187.6 188 50.0
FAN26G0883 Fragaria x ananassa HOM05D007528 ORTHO05D008503 9.0e-46 187.6 173 51.4
AL4G39090 Arabidopsis lyrata HOM05D007528 ORTHO05D008503 1.5e-45 186.8 186 50.0
AT2G41120 Arabidopsis thaliana HOM05D007528 ORTHO05D008503 1.5e-45 186.8 189 50.8
RcHm_v2.0_Chr3g0495771 Rosa chinensis HOM05D007528 ORTHO05D008503 1.5e-45 186.8 176 51.1
Sabra06G0018500 Salix brachista HOM05D007528 ORTHO05D008503 2.0e-45 186.4 185 47.6
CsaV3_3G039560 Cucumis sativus L. HOM05D007528 ORTHO05D008503 2.6e-45 186.0 171 51.5
Sp4g23430 Schrenkiella parvula HOM05D007528 ORTHO05D008503 7.6e-45 184.5 186 51.6
Ca_08340_v3 Cicer arietinum L. HOM05D007528 ORTHO05D008503 1.3e-44 183.7 170 50.0
Sed0015046 Sechium edule HOM05D007528 ORTHO05D008503 1.3e-44 183.7 171 49.7
arahy.Tifrunner.gnm1.ann1.ARK2IX Arachis hypogaea HOM05D007528 ORTHO05D008503 1.7e-44 183.3 180 48.9
Phvul.001G109000 Phaseolus vulgaris HOM05D007528 ORTHO05D008503 1.7e-44 183.3 168 49.4
Potri.006G025200 Populus trichocarpa HOM05D007528 ORTHO05D008503 1.7e-44 183.3 171 49.1
arahy.Tifrunner.gnm1.ann1.ZMQ31P Arachis hypogaea HOM05D007528 ORTHO05D008503 2.9e-44 182.6 172 48.8
Psat3g082960 Pisum sativum HOM05D007528 ORTHO05D008503 2.9e-44 182.6 176 48.3
A04p31360 Brassica napus HOM05D007528 ORTHO05D008503 3.8e-44 182.2 172 53.5
Medtr7g088210 Medicago truncatula HOM05D007528 ORTHO05D008503 3.8e-44 182.2 168 48.8
BraA04t18594Z Brassica rapa HOM05D007528 ORTHO05D008503 1.1e-43 180.6 172 52.9
CBR_g37627 Chara braunii HOM05D007528 ORTHO05D008503 1.4e-43 180.3 186 46.8
Aa31LG3G960 Aethionema arabicum HOM05D007528 ORTHO05D008503 1.9e-43 179.9 177 49.2
C04p68770 Brassica napus HOM05D007528 ORTHO05D008503 1.9e-43 179.9 182 51.1
BolC4t28382H Brassica oleracea HOM05D007528 ORTHO05D008503 2.5e-43 179.5 182 51.1
Glyma.19G123400 Glycine max HOM05D007528 ORTHO05D008503 4.2e-43 178.7 169 49.7
TPR.G23704 Trifolium pratense HOM05D007528 ORTHO05D008503 5.5e-43 178.3 168 48.8
Os11g0130200 Oryza sativa ssp. japonica HOM05D007528 ORTHO05D008503 7.2e-43 177.9 186 51.1
Haze_09241 Corylus avellana HOM05D007528 ORTHO05D006305 9.3e-43 177.6 197 43.7
Prupe.7G017900 Prunus persica HOM05D007528 ORTHO05D008503 1.6e-42 176.8 135 57.8
Zm00001eb195960 Zea mays HOM05D007528 ORTHO05D008503 1.8e-41 173.3 188 50.0
BcaNung05626 Brassica carinata HOM05D007528 ORTHO05D008503 3.4e-37 159.1 174 46.0
CARHR136210 Cardamine hirsuta HOM05D007528 ORTHO05D008503 2.1e-34 149.8 177 46.3
Rhsim10G0151800 Rhododendron simsii HOM05D007528 ORTHO05D008503 2.3e-33 146.4 102 61.8
CiPaw.13G169300 Carya illinoinensis HOM05D007528 ORTHO05D008503 1.5e-32 143.7 110 55.5
Sopen03g008910 Solanum pennellii HOM05D007528 ORTHO05D008503 1.0e-25 120.9 117 49.6
CAN.G1129.33 Capsicum annuum HOM05D007528 ORTHO05D008503 4.4e-24 115.5 117 46.2
BcaC02g12850 Brassica carinata HOM05D007528 ORTHO05D008503 2.2e-23 113.2 85 57.6
FAN19G0638 Fragaria x ananassa HOM05D007528 ORTHO05D008503 2.2e-23 113.2 118 46.6
unitig_21.g20663 Utricularia gibba HOM05D007528 ORTHO05D008503 1.1e-19 100.9 173 33.5
SEGI_18622 Sequoiadendron giganteum HOM05D007528 ORTHO05D008503 4.8e-15 85.5 72 52.8
VMungo1383G2363 Vigna mungo HOM05D007528 ORTHO05D008503 6.5e-12 75.1 52 57.7
Glyma.03G119100 Glycine max HOM05D007528 ORTHO05D008503 1.5e-11 73.9 113 35.4
Glyma.03G119000 Glycine max HOM05D007528 ORTHO05D008503 1.2e-10 70.9 53 54.7


User provided reference genes

Program Settings