Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO266G0037 Selaginella moellendorffii HOM05D005850 ORTHO05D007405 7.8e-174 613.6 291 100.0
SMO266G0057 Selaginella moellendorffii HOM05D005850 ORTHO05D007405 2.8e-155 552.0 294 91.8
SMO297G0022 Selaginella moellendorffii HOM05D005850 ORTHO05D007405 5.3e-98 361.7 278 69.8
Os05g0556000 Oryza sativa ssp. japonica HOM05D005850 ORTHO05D007405 1.4e-85 320.5 294 53.1
PSO063G4477 Papaver somniferum HOM05D005850 ORTHO05D007405 5.7e-84 315.1 294 53.4
PSO782G2614 Papaver somniferum HOM05D005850 ORTHO05D007405 5.7e-84 315.1 294 52.7
RcHm_v2.0_Chr2g0091051 Rosa chinensis HOM05D005850 ORTHO05D007405 5.7e-84 315.1 294 53.4
Migut.J01174 Erythranthe guttata HOM05D005850 ORTHO05D007405 7.5e-84 314.7 294 53.7
HanXRQChr12g0355831 Helianthus annuus HOM05D005850 ORTHO05D007405 7.5e-84 314.7 293 52.2
CsaV3_2G002440 Cucumis sativus L. HOM05D005850 ORTHO05D007405 1.3e-83 313.9 293 52.2
FvH4_1g05370 Fragaria vesca HOM05D005850 ORTHO05D007405 1.3e-83 313.9 294 53.4
FAN19G1578 Fragaria x ananassa HOM05D005850 ORTHO05D007405 1.3e-83 313.9 294 53.4
Lj3g0026332 Lotus japonicus HOM05D005850 ORTHO05D007405 1.3e-83 313.9 294 53.4
FAN26G3074 Fragaria x ananassa HOM05D005850 ORTHO05D007405 1.7e-83 313.5 293 53.6
Glyma.12G008700 Glycine max HOM05D005850 ORTHO05D007405 1.7e-83 313.5 294 52.7
FAN28G1812 Fragaria x ananassa HOM05D005850 ORTHO05D007405 2.2e-83 313.2 294 53.4
CiPaw.03G235100 Carya illinoinensis HOM05D005850 ORTHO05D007405 3.7e-83 312.4 294 52.7
Glyma.09G227900 Glycine max HOM05D005850 ORTHO05D007405 3.7e-83 312.4 294 52.4
Gohir.A06G060700 Gossypium hirsutum HOM05D005850 ORTHO05D007405 4.8e-83 312.0 294 53.7
Gorai.010G068900 Gossypium raimondii HOM05D005850 ORTHO05D007405 8.3e-83 311.2 294 54.1
Aqoxy7G01830 Aquilegia oxysepala HOM05D005850 ORTHO05D007405 1.1e-82 310.8 294 53.4
Dinv41576 Davidia involucrata HOM05D005850 ORTHO05D007405 1.1e-82 310.8 294 52.4
Gohir.D06G059100 Gossypium hirsutum HOM05D005850 ORTHO05D007405 1.4e-82 310.5 294 53.7
Actinidia20338 Actinidia chinensis HOM05D005850 ORTHO05D007405 1.8e-82 310.1 294 53.4
Nn8g39265 Nelumbo nucifera HOM05D005850 ORTHO05D007405 2.4e-82 309.7 293 53.9
QL02p086096 Quercus lobata HOM05D005850 ORTHO05D007405 2.4e-82 309.7 294 53.1
MELO3C004544.2 Cucumis melo HOM05D005850 ORTHO05D007405 3.1e-82 309.3 293 51.5
Thecc.09G114700 Theobroma cacao HOM05D005850 ORTHO05D007405 3.1e-82 309.3 294 54.1
GSVIVG01015433001 Vitis vinifera HOM05D005850 ORTHO05D007405 5.3e-82 308.5 294 53.1
Cc06_g09340 Coffea canephora HOM05D005850 ORTHO05D007405 7.0e-82 308.1 293 51.2
FAN26G0510 Fragaria x ananassa HOM05D005850 ORTHO05D007405 9.1e-82 307.8 293 53.2
Psat0s3467g0080 Pisum sativum HOM05D005850 ORTHO05D007405 1.2e-81 307.4 294 52.4
Lalb_Chr19g0140271 Lupinus albus HOM05D005850 ORTHO05D007405 1.6e-81 307.0 294 52.0
VMungo1127G0399 Vigna mungo HOM05D005850 ORTHO05D007405 1.6e-81 307.0 294 52.7
Phvul.011G012400 Phaseolus vulgaris HOM05D005850 ORTHO05D007405 3.5e-81 305.8 294 52.0
Prupe.7G227200 Prunus persica HOM05D005850 ORTHO05D007405 3.5e-81 305.8 294 52.4
MSTRG.19610 Avicennia marina HOM05D005850 ORTHO05D007405 5.9e-81 305.1 293 52.9
Hma1.2p1_1968F.1_g309450 Hydrangea macrophylla HOM05D005850 ORTHO05D007405 5.9e-81 305.1 294 52.4
vmacro20668 Vaccinium macrocarpon HOM05D005850 ORTHO05D007405 5.9e-81 305.1 333 47.7
CSS0027687 Camellia sinensis var. sinensis HOM05D005850 ORTHO05D007405 7.7e-81 304.7 293 51.2
ECA234G3981 Erigeron canadensis HOM05D005850 ORTHO05D007405 7.7e-81 304.7 293 50.9
MD02G1062200 Malus domestica HOM05D005850 ORTHO05D007405 7.7e-81 304.7 294 52.4
Medtr0314s0030 Medicago truncatula HOM05D005850 ORTHO05D007405 7.7e-81 304.7 294 52.0
MBI01_g03369_MAGBIO Magnolia biondii HOM05D005850 ORTHO05D007405 1.3e-80 303.9 294 52.0
Nitab4.5_0004979g0100 Nicotiana tabacum HOM05D005850 ORTHO05D007405 1.3e-80 303.9 292 52.4
TPR.G30190 Trifolium pratense HOM05D005850 ORTHO05D007405 1.3e-80 303.9 294 51.7
unitig_22.g6630 Utricularia gibba HOM05D005850 ORTHO05D007405 1.3e-80 303.9 293 51.5
CANSAT56G0565 Cannabis sativa HOM05D005850 ORTHO05D007405 2.9e-80 302.8 294 52.4
COL.COLO4_34934 Corchorus olitorius HOM05D005850 ORTHO05D007405 5.0e-80 302.0 294 52.7
Ciclev10008544m.g Citrus clementina HOM05D005850 ORTHO05D007405 6.5e-80 301.6 294 52.0
Eucgr.C04135 Eucalyptus grandis HOM05D005850 ORTHO05D007405 6.5e-80 301.6 294 51.0
Atru.chr7.1296 Acer truncatum HOM05D005850 ORTHO05D007405 8.5e-80 301.2 294 52.4
Nitab4.5_0010299g0010 Nicotiana tabacum HOM05D005850 ORTHO05D007405 1.1e-79 300.8 292 51.0
DCAR_028730 Daucus carota HOM05D005850 ORTHO05D007405 1.5e-79 300.4 293 50.9
Sed0018565 Sechium edule HOM05D005850 ORTHO05D007405 3.2e-79 299.3 294 51.4
PGR102G2365 Punica granatum HOM05D005850 ORTHO05D007405 9.4e-79 297.7 294 51.0
arahy.Tifrunner.gnm1.ann1.JQ4W8U Arachis hypogaea HOM05D005850 ORTHO05D007405 2.7e-78 296.2 315 48.9
Sopen04g019720 Solanum pennellii HOM05D005850 ORTHO05D007405 3.6e-78 295.8 299 50.5
Cfa003291 Carpinus fangiana HOM05D005850 ORTHO05D007405 4.7e-78 295.4 285 51.9
CSS0015458 Camellia sinensis var. sinensis HOM05D005850 ORTHO05D007405 6.1e-78 295.0 293 49.8
ATR0037G042 Amborella trichopoda HOM05D005850 ORTHO05D007405 8.0e-78 294.7 294 50.7
AT4G13400 Arabidopsis thaliana HOM05D005850 ORTHO05D007405 8.0e-78 294.7 293 49.1
AUR62011029 Chenopodium quinoa HOM05D005850 ORTHO05D007405 8.0e-78 294.7 292 49.7
Potri.018G076700 Populus trichocarpa HOM05D005850 ORTHO05D007405 8.0e-78 294.7 294 50.7
AL9U10250 Arabidopsis lyrata HOM05D005850 ORTHO05D007405 1.4e-77 293.9 293 48.8
Carub.0007s2916 Capsella rubella HOM05D005850 ORTHO05D007405 3.0e-77 292.7 293 49.5
C04p42500 Brassica napus HOM05D005850 ORTHO05D007405 1.5e-76 290.4 293 48.5
THA.LOC104808745 Tarenaya hassleriana HOM05D005850 ORTHO05D007405 2.6e-76 289.7 293 47.8
BcaC02g09427 Brassica carinata HOM05D005850 ORTHO05D007405 3.4e-76 289.3 293 48.1
BolC4t25826H Brassica oleracea HOM05D005850 ORTHO05D007405 3.4e-76 289.3 293 48.1
CSS0006300 Camellia sinensis var. sinensis HOM05D005850 ORTHO05D007405 3.4e-76 289.3 309 48.9
Aa31LG9G4350 Aethionema arabicum HOM05D005850 ORTHO05D007405 4.4e-76 288.9 293 48.5
arahy.Tifrunner.gnm1.ann1.2WTJ41 Arachis hypogaea HOM05D005850 ORTHO05D007405 4.4e-76 288.9 323 47.7
Lsat_1_v5_gn_5_100240 Lactuca sativa HOM05D005850 ORTHO05D007405 4.4e-76 288.9 308 47.7
Sp7g10960 Schrenkiella parvula HOM05D005850 ORTHO05D007405 4.4e-76 288.9 293 47.4
Thhalv10025099m.g Eutrema salsugineum HOM05D005850 ORTHO05D007405 5.7e-76 288.5 294 49.0
Ca_14665_v3 Cicer arietinum L. HOM05D005850 ORTHO05D007405 7.5e-76 288.1 274 53.3
A04p08720 Brassica napus HOM05D005850 ORTHO05D007405 9.8e-76 287.7 293 47.8
Thhalv10025558m.g Eutrema salsugineum HOM05D005850 ORTHO05D007405 9.8e-76 287.7 294 48.6
BcaB03g16095 Brassica carinata HOM05D005850 ORTHO05D007405 2.2e-75 286.6 293 47.8
BraA04t16569Z Brassica rapa HOM05D005850 ORTHO05D007405 4.8e-75 285.4 293 47.4
Sabra18G0064500 Salix brachista HOM05D005850 ORTHO05D007405 9.1e-74 281.2 302 49.3
Pp3c8_16220 Physcomitrium patens HOM05D005850 ORTHO05D007405 1.3e-72 277.3 264 53.4
FAN23G2543 Fragaria x ananassa HOM05D005850 ORTHO05D007405 2.9e-72 276.2 294 49.3
Sc07g0007400 Simmondsia chinensis HOM05D005850 ORTHO05D007405 6.6e-72 275.0 272 52.2
TWI32G0506 Tripterygium wilfordii HOM05D005850 ORTHO05D007405 7.2e-71 271.6 307 47.6
Manes.16G069601 Manihot esculenta HOM05D005850 ORTHO05D007405 9.5e-71 271.2 265 49.8
Zm00001eb343200 Zea mays HOM05D005850 ORTHO05D007405 1.2e-70 270.8 295 44.7
TAR636G0790 Trochodendron aralioides HOM05D005850 ORTHO05D007405 5.2e-69 265.4 261 51.0
Peaxi162Scf00560g00618 Petunia axillaris HOM05D005850 ORTHO05D007405 3.7e-67 259.2 245 52.2
Mapoly0029s0010 Marchantia polymorpha HOM05D005850 ORTHO05D007405 6.3e-67 258.5 292 47.3
EL10Ac8g18542 Beta vulgaris HOM05D005850 ORTHO05D007405 3.2e-66 256.1 294 45.6
Duzib168G1614 Durio zibethinus HOM05D005850 ORTHO05D007405 9.5e-63 244.6 291 45.4
Rhsim01G0091700 Rhododendron simsii HOM05D005850 ORTHO05D007405 4.7e-62 242.3 259 50.6
Hma1.2p1_1968F.1_g309460 Hydrangea macrophylla HOM05D005850 ORTHO05D007405 1.7e-59 233.8 279 45.5
Cre02.g104100 Chlamydomonas reinhardtii HOM05D005850 ORTHO05D007405 8.0e-54 214.9 338 39.3
CBR_g37310 Chara braunii HOM05D005850 ORTHO05D007405 2.0e-52 210.3 419 34.1
AagrBONN_evm.TU.Sc2ySwM_344.854 Anthoceros agrestis HOM05D005850 ORTHO05D007405 3.7e-51 206.1 191 54.5
HPP92_003437 Vanilla planifolia HOM05D005850 ORTHO05D007405 5.4e-50 202.2 293 39.6
MD02G1050500 Malus domestica HOM05D005850 ORTHO05D007405 3.0e-48 196.4 166 56.6
CARHR218970 Cardamine hirsuta HOM05D005850 ORTHO05D007405 8.3e-43 178.3 174 52.3
MD00G1220200 Malus domestica HOM05D005850 ORTHO05D007405 1.0e-40 171.4 134 58.2
Hund09181 Selenicereus undatus HOM05D005850 ORTHO05D007405 3.9e-40 169.5 134 58.2
Cpa.g.sc23.140 Carica papaya HOM05D005850 ORTHO05D007405 2.8e-38 163.3 134 57.5
Ah.14g081400 Amaranthus hybridus HOM05D005850 ORTHO05D007405 3.1e-37 159.8 283 35.7
Zm00001eb295310 Zea mays HOM05D005850 ORTHO05D007405 3.1e-37 159.8 177 46.3
AUR62033401 Chenopodium quinoa HOM05D005850 ORTHO05D007405 2.0e-36 157.1 146 51.4
MBI01_g03372_MAGBIO Magnolia biondii HOM05D005850 ORTHO05D007405 3.8e-35 152.9 241 40.2
FAN12G1654 Fragaria x ananassa HOM05D005850 ORTHO05D007405 9.0e-29 131.7 131 53.4
AUR62033402 Chenopodium quinoa HOM05D005850 ORTHO05D007405 1.1e-26 124.8 105 53.3
Solyc04g049620.2 Solanum lycopersicum HOM05D005850 ORTHO05D007405 2.4e-26 123.6 105 54.3
MD02G1054000 Malus domestica HOM05D005850 ORTHO05D007405 4.2e-26 122.9 84 65.5
Haze_25682 Corylus avellana HOM05D005850 ORTHO05D007405 1.6e-25 120.9 162 40.7
FAN12G0472 Fragaria x ananassa HOM05D005850 ORTHO05D007405 2.1e-25 120.6 113 52.2
ClCG11G002620 Citrullus lanatus HOM05D005850 ORTHO05D007405 2.7e-25 120.2 117 50.4
Haze_25681 Corylus avellana HOM05D002586 ORTHO05D007521 2.7e-25 120.2 127 46.5
MD02G1052000 Malus domestica HOM05D005850 ORTHO05D007405 6.6e-24 115.5 110 51.8
MD02G1053400 Malus domestica HOM05D005850 ORTHO05D007405 9.6e-23 111.7 134 43.3
FvH4_4g25970 Fragaria vesca HOM05D005850 ORTHO05D007405 3.1e-21 106.7 111 51.4
MD02G1051000 Malus domestica HOM05D005850 ORTHO05D007405 5.8e-20 102.4 72 61.1
Hund09180 Selenicereus undatus HOM05D005850 ORTHO05D007405 3.8e-19 99.8 77 54.5
MD02G1055000 Malus domestica HOM05D005850 ORTHO05D007405 8.4e-19 98.6 66 62.1
AagrBONN_evm.TU.Sc2ySwM_368.2173 Anthoceros agrestis HOM05D006802 ORTHO05D008507 1.1e-15 88.2 342 25.4
ECA236G2804 Erigeron canadensis HOM05D006802 ORTHO05D008507 3.3e-15 86.7 313 28.1
Cc01_g19110 Coffea canephora HOM05D006802 ORTHO05D008507 2.1e-14 84.0 323 27.2
Mapoly0127s0046 Marchantia polymorpha HOM05D006802 ORTHO05D008507 1.4e-13 81.3 354 25.7
unitig_8.g3726 Utricularia gibba HOM05D006802 ORTHO05D008507 1.8e-13 80.9 200 30.0
PSO170G3117 Papaver somniferum HOM05D006802 ORTHO05D008507 5.3e-13 79.3 350 24.0
SEGI_17149 Sequoiadendron giganteum HOM05D005850 ORTHO05D007405 6.9e-13 79.0 56 57.1
THA.LOC104801985 Tarenaya hassleriana HOM05D006802 ORTHO05D008507 1.5e-12 77.8 301 24.9
Thecc.01G272900 Theobroma cacao HOM05D006802 ORTHO05D008507 2.0e-12 77.4 335 25.7
Atru.chr5.1503 Acer truncatum HOM05D006802 ORTHO05D008507 3.4e-12 76.6 358 25.1
Hma1.2p1_1924F.1_g307690 Hydrangea macrophylla HOM05D006802 ORTHO05D008507 5.8e-12 75.9 332 25.0
Rhsim01G0272400 Rhododendron simsii HOM05D006802 ORTHO05D008507 1.7e-11 74.3 332 25.3
Sed0009701 Sechium edule HOM05D006802 ORTHO05D008507 1.7e-11 74.3 335 26.3
vmacro14901 Vaccinium macrocarpon HOM05D006802 ORTHO05D008507 1.7e-11 74.3 345 25.2
BraA04t15733Z Brassica rapa HOM05D006802 ORTHO05D000675 2.2e-11 73.9 306 25.8
BolC4t24525H Brassica oleracea HOM05D006802 ORTHO05D000675 2.9e-11 73.6 185 30.3
CAN.G433.12 Capsicum annuum HOM05D006802 ORTHO05D008507 2.9e-11 73.6 348 24.7
C04p29940 Brassica napus HOM05D000738 ORTHO05D000675 3.8e-11 73.2 185 29.2
ClCG09G007380 Citrullus lanatus HOM05D006802 ORTHO05D008507 3.8e-11 73.2 360 23.9
Eucgr.K03337 Eucalyptus grandis HOM05D006802 ORTHO05D008507 3.8e-11 73.2 353 26.6
HanXRQChr04g0115321 Helianthus annuus HOM05D006802 ORTHO05D008507 3.8e-11 73.2 208 28.4
A04p00130 Brassica napus HOM05D006802 ORTHO05D008507 4.9e-11 72.8 306 25.5
Lsat_1_v5_gn_8_57120 Lactuca sativa HOM05D006802 ORTHO05D008507 4.9e-11 72.8 308 24.7
Hma1.2p1_1924F.1_g307700 Hydrangea macrophylla HOM05D006802 ORTHO05D008507 1.1e-10 71.6 215 26.0
Oeu023625.1 Olea europaea HOM05D006802 ORTHO05D008507 1.1e-10 71.6 311 24.4
PGSC0003DMG400019349 Solanum tuberosum HOM05D006802 ORTHO05D008507 1.9e-10 70.9 349 26.4
Duzib133G0133 Durio zibethinus HOM05D006802 ORTHO05D008507 3.2e-10 70.1 349 23.5
Sopen09g027330 Solanum pennellii HOM05D006802 ORTHO05D008507 3.2e-10 70.1 349 25.8
SGA_v2.0_scaffold138G35303 Striga asiatica HOM05D006802 ORTHO05D008507 3.2e-10 70.1 193 29.5
SEGI_15274 Sequoiadendron giganteum HOM05D005850 ORTHO05D007405 5.5e-10 69.3 44 65.9
DCAR_005859 Daucus carota HOM05D006802 ORTHO05D008507 7.1e-10 68.9 354 24.0
MD03G1259400 Malus domestica HOM05D006802 ORTHO05D008507 1.2e-09 68.2 320 26.9
Thhalv10006021m.g Eutrema salsugineum HOM05D006802 ORTHO05D008507 1.6e-09 67.8 204 27.0
COL.COLO4_09049 Corchorus olitorius HOM05D006802 ORTHO05D008507 2.1e-09 67.4 331 24.2
CANSAT25G2646 Cannabis sativa HOM05D006802 ORTHO05D008507 2.7e-09 67.0 222 27.9
FAN15G2517 Fragaria x ananassa HOM05D006802 ORTHO05D008507 4.6e-09 66.2 324 25.6
FAN15G2655 Fragaria x ananassa HOM05D006802 ORTHO05D008507 4.6e-09 66.2 324 25.6
Solyc09g065580.4 Solanum lycopersicum HOM05D006802 ORTHO05D008507 6.0e-09 65.9 306 25.2
QL12p020415 Quercus lobata HOM05D006802 ORTHO05D008507 7.9e-09 65.5 347 22.8
Ah.11g050290 Amaranthus hybridus HOM05D006802 ORTHO05D008507 1.0e-08 65.1 363 24.8
Aa31LG10G17140 Aethionema arabicum HOM05D000738 ORTHO05D000675 1.3e-08 64.7 340 24.1
Lj7E642T0 Lonicera japonica HOM05D005850 ORTHO05D007405 1.3e-08 64.7 56 46.4
Sp5g00240 Schrenkiella parvula HOM05D006802 ORTHO05D008507 2.3e-08 63.9 219 25.6
Carub.0005s2995 Capsella rubella HOM05D006802 ORTHO05D008507 3.0e-08 63.5 334 24.0
Nitab4.5_0000252g0180 Nicotiana tabacum HOM05D006802 ORTHO05D008507 3.0e-08 63.5 305 24.6
Prupe.8G235900 Prunus persica HOM05D006802 ORTHO05D008507 3.0e-08 63.5 329 24.3
Aqoxy2G03446 Aquilegia oxysepala HOM05D006802 ORTHO05D008507 3.9e-08 63.2 361 22.4
CDE05G0787 Ceratophyllum demersum HOM05D006802 ORTHO05D008507 3.9e-08 63.2 210 26.2
RcHm_v2.0_Chr6g0290231 Rosa chinensis HOM05D006802 ORTHO05D008507 3.9e-08 63.2 323 26.0
Nitab4.5_0000678g0020 Nicotiana tabacum HOM05D006802 ORTHO05D008507 6.7e-08 62.4 306 23.9
MD02G1055700 Malus domestica HOM05D005850 ORTHO05D007405 8.7e-08 62.0 41 65.9
Lalb_Chr02g0142571 Lupinus albus HOM05D006802 ORTHO05D008507 1.1e-07 61.6 355 24.8
Manes.01G204700 Manihot esculenta HOM05D006802 ORTHO05D008507 2.5e-07 60.5 345 22.6
VMungo0720G2797 Vigna mungo HOM05D006802 ORTHO05D008507 7.4e-07 58.9 331 26.6
Ca_09735_v3 Cicer arietinum L. HOM05D000738 ORTHO05D000675 1.6e-06 57.8 312 23.1
Haze_04660 Corylus avellana HOM05D006802 ORTHO05D008507 2.1e-06 57.4 347 23.1
SEGI_01373 Sequoiadendron giganteum HOM05D005850 ORTHO05D007405 2.1e-06 57.4 75 41.3
Cfa006184 Carpinus fangiana HOM05D006802 ORTHO05D008507 2.8e-06 57.0 346 23.1
Cpa.g.sc52.110 Carica papaya HOM05D006802 ORTHO05D008507 6.2e-06 55.8 351 22.2


User provided reference genes

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