Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO266G0022 Selaginella moellendorffii HOM05D004273 ORTHO05D005041 1.4e-240 835.9 418 100.0
AagrBONN_evm.TU.Sc2ySwM_117.239 Anthoceros agrestis HOM05D004273 ORTHO05D005041 1.2e-90 337.8 375 45.3
MBI05_g06541_MAGBIO Magnolia biondii HOM05D004273 ORTHO05D005041 1.0e-86 324.7 426 42.0
SEGI_06894 Sequoiadendron giganteum HOM05D004273 ORTHO05D005041 1.5e-85 320.9 423 42.1
Os03g0820900 Oryza sativa ssp. japonica HOM05D004273 ORTHO05D005041 1.3e-84 317.8 423 40.9
Gorai.003G134500 Gossypium raimondii HOM05D004273 ORTHO05D005041 4.1e-83 312.8 428 39.7
PSO339G3737 Papaver somniferum HOM05D004273 ORTHO05D005041 5.3e-83 312.4 424 42.0
Potri.009G028700 Populus trichocarpa HOM05D004273 ORTHO05D005041 5.3e-83 312.4 428 39.3
Gohir.A03G040200 Gossypium hirsutum HOM05D004273 ORTHO05D005041 6.9e-83 312.0 428 39.5
Zm00001eb062630 Zea mays HOM05D004273 ORTHO05D005041 9.1e-83 311.6 425 40.5
Cfa011474 Carpinus fangiana HOM05D004273 ORTHO05D005041 2.0e-82 310.5 430 39.8
PSO384G1393 Papaver somniferum HOM05D004273 ORTHO05D005041 3.4e-82 309.7 427 41.9
COL.COLO4_18478 Corchorus olitorius HOM05D004273 ORTHO05D005041 5.9e-82 308.9 425 38.4
Lj1A156G61 Lonicera japonica HOM05D004273 ORTHO05D005041 5.9e-82 308.9 435 39.5
CiPaw.13G097100 Carya illinoinensis HOM05D004273 ORTHO05D005041 1.0e-81 308.1 427 40.7
Gohir.D03G127800 Gossypium hirsutum HOM05D004273 ORTHO05D005041 1.3e-81 307.8 428 39.0
TWI79G1222 Tripterygium wilfordii HOM05D004273 ORTHO05D005041 1.3e-81 307.8 425 40.7
Hma1.2p1_0624F.1_g191440 Hydrangea macrophylla HOM05D004273 ORTHO05D005041 6.5e-81 305.4 445 37.8
AL5G25280 Arabidopsis lyrata HOM05D004273 ORTHO05D005041 8.5e-81 305.1 424 38.4
Manes.04G033100 Manihot esculenta HOM05D004273 ORTHO05D005041 1.1e-80 304.7 429 37.3
TAR633G2082 Trochodendron aralioides HOM05D004273 ORTHO05D005041 3.2e-80 303.1 423 38.5
AT3G46450 Arabidopsis thaliana HOM05D004273 ORTHO05D005041 5.5e-80 302.4 426 38.0
CAN.G394.46 Capsicum annuum HOM05D004273 ORTHO05D005041 5.5e-80 302.4 439 38.5
Sp5g15230 Schrenkiella parvula HOM05D004273 ORTHO05D005041 5.5e-80 302.4 424 37.7
Prupe.6G080900 Prunus persica HOM05D004273 ORTHO05D005041 7.2e-80 302.0 428 36.9
TWI31G0117 Tripterygium wilfordii HOM05D004273 ORTHO05D005041 9.4e-80 301.6 438 38.4
Sabra09G0019900 Salix brachista HOM05D004273 ORTHO05D005041 1.6e-79 300.8 430 39.3
Dinv32873 Davidia involucrata HOM05D004273 ORTHO05D005041 4.7e-79 299.3 445 38.2
BcaB02g10723 Brassica carinata HOM05D004273 ORTHO05D005041 8.0e-79 298.5 428 38.3
Medtr4g063605 Medicago truncatula HOM05D004273 ORTHO05D005041 8.0e-79 298.5 440 37.5
QL01p032775 Quercus lobata HOM05D004273 ORTHO05D005041 8.0e-79 298.5 425 40.0
A06p27020 Brassica napus HOM05D004273 ORTHO05D005041 1.0e-78 298.1 424 38.0
Potri.001G237400 Populus trichocarpa HOM05D004273 ORTHO05D005041 1.0e-78 298.1 434 37.6
THA.LOC104799449 Tarenaya hassleriana HOM05D004273 ORTHO05D005041 1.0e-78 298.1 433 38.1
Lsat_1_v5_gn_8_77981 Lactuca sativa HOM05D000739 ORTHO05D005041 1.4e-78 297.7 436 38.5
Thhalv10002507m.g Eutrema salsugineum HOM05D004273 ORTHO05D005041 1.8e-78 297.4 430 38.4
PGSC0003DMG400030404 Solanum tuberosum HOM05D004273 ORTHO05D005041 1.8e-78 297.4 435 37.2
BolC3t19006H Brassica oleracea HOM05D004273 ORTHO05D005041 3.0e-78 296.6 424 38.0
Cpa.g.sc190.7 Carica papaya HOM05D004273 ORTHO05D005041 3.9e-78 296.2 433 36.3
Carub.0005s1225 Capsella rubella HOM05D004273 ORTHO05D005041 5.2e-78 295.8 426 37.8
Dinv01561 Davidia involucrata HOM05D004273 ORTHO05D005041 5.2e-78 295.8 434 37.8
BraA06t25640Z Brassica rapa HOM05D004273 ORTHO05D005041 6.7e-78 295.4 426 38.3
Lj3g0025927 Lotus japonicus HOM05D004273 ORTHO05D005041 6.7e-78 295.4 429 38.0
RcHm_v2.0_Chr5g0063781 Rosa chinensis HOM05D004273 ORTHO05D005041 6.7e-78 295.4 427 38.2
ECA236G0424 Erigeron canadensis HOM05D004273 ORTHO05D005041 8.8e-78 295.0 443 39.1
Peaxi162Scf00679g00214 Petunia axillaris HOM05D004273 ORTHO05D005041 8.8e-78 295.0 444 39.0
DCAR_005310 Daucus carota HOM05D004273 ORTHO05D005041 1.1e-77 294.7 431 38.1
BcaC01g02262 Brassica carinata HOM05D004273 ORTHO05D005041 1.5e-77 294.3 424 37.7
Oeu017093.1 Olea europaea HOM05D004273 ORTHO05D005041 2.0e-77 293.9 425 37.6
Thecc.09G325000 Theobroma cacao HOM05D004273 ORTHO05D005041 2.0e-77 293.9 431 38.5
Sopen06g032400 Solanum pennellii HOM05D004273 ORTHO05D005041 2.6e-77 293.5 434 38.0
HanXRQChr02g0044491 Helianthus annuus HOM05D004273 ORTHO05D005041 3.3e-77 293.1 437 38.9
Sed0008303 Sechium edule HOM05D004273 ORTHO05D005041 3.3e-77 293.1 429 38.9
TAR636G0691 Trochodendron aralioides HOM05D004273 ORTHO05D005041 3.3e-77 293.1 433 36.7
CsaV3_6G017020 Cucumis sativus L. HOM05D004273 ORTHO05D005041 4.4e-77 292.7 431 38.7
ATR0559G270 Amborella trichopoda HOM05D004273 ORTHO05D005041 5.7e-77 292.4 422 39.6
PGR102G1220 Punica granatum HOM05D004273 ORTHO05D005041 5.7e-77 292.4 436 38.8
Haze_24060 Corylus avellana HOM05D004273 ORTHO05D005041 9.7e-77 291.6 454 36.6
C03p67250 Brassica napus HOM05D004273 ORTHO05D005041 1.3e-76 291.2 424 37.5
CARHR155380 Cardamine hirsuta HOM05D004273 ORTHO05D005041 1.3e-76 291.2 427 37.5
ClCG02G020320 Citrullus lanatus HOM05D004273 ORTHO05D005041 1.3e-76 291.2 431 39.0
FAN21G1625 Fragaria x ananassa HOM05D004273 ORTHO05D005041 1.7e-76 290.8 429 36.8
Mapoly0153s0026 Marchantia polymorpha HOM05D004273 ORTHO05D005041 2.8e-76 290.0 360 46.1
MD11G1142800 Malus domestica HOM05D004273 ORTHO05D005041 3.7e-76 289.7 428 37.6
FvH4_3g35600 Fragaria vesca HOM05D004273 ORTHO05D005041 4.8e-76 289.3 421 36.6
Sabra16G0143100 Salix brachista HOM05D004273 ORTHO05D005041 4.8e-76 289.3 436 37.2
Solyc06g075980.3 Solanum lycopersicum HOM05D004273 ORTHO05D005041 6.3e-76 288.9 436 36.7
MD03G1096600 Malus domestica HOM05D004273 ORTHO05D005041 1.1e-75 288.1 428 35.7
Pp3c14_19130 Physcomitrium patens HOM05D004273 ORTHO05D005041 1.1e-75 288.1 457 38.1
SGA_v2.0_scaffold111G31385 Striga asiatica HOM05D004273 ORTHO05D005041 1.1e-75 288.1 438 37.2
TPR.G10209 Trifolium pratense HOM05D004273 ORTHO05D005041 2.4e-75 287.0 424 37.5
EL10Ac2g03411 Beta vulgaris HOM05D004273 ORTHO05D005041 3.1e-75 286.6 339 40.7
CDE04G0924 Ceratophyllum demersum HOM05D004273 ORTHO05D005041 3.1e-75 286.6 430 37.4
GSVIVG01025001001 Vitis vinifera HOM05D004273 ORTHO05D005041 3.1e-75 286.6 420 38.8
Ca_19181_v3 Cicer arietinum L. HOM05D004273 ORTHO05D005041 5.3e-75 285.8 426 36.9
Dinv31442 Davidia involucrata HOM05D004273 ORTHO05D005041 5.3e-75 285.8 424 35.4
Glyma.11G141100 Glycine max HOM05D004273 ORTHO05D005041 7.0e-75 285.4 426 36.2
Atru.chr3.3842_Atru.chr3.3843 Acer truncatum HOM05D004273 ORTHO05D005041 2.0e-74 283.9 429 38.2
FAN16G0116 Fragaria x ananassa HOM05D004273 ORTHO05D005041 2.0e-74 283.9 427 36.8
Duzib168G0407 Durio zibethinus HOM05D004273 ORTHO05D005041 2.6e-74 283.5 431 37.6
MSTRG.1791 Avicennia marina HOM05D004273 ORTHO05D005041 3.5e-74 283.1 434 36.2
Lalb_Chr03g0026761 Lupinus albus HOM05D004273 ORTHO05D005041 3.5e-74 283.1 427 36.5
arahy.Tifrunner.gnm1.ann1.N7EFUM Arachis hypogaea HOM05D004273 ORTHO05D005041 5.9e-74 282.3 431 36.2
Aqoxy4G02965 Aquilegia oxysepala HOM05D004273 ORTHO05D005041 7.7e-74 282.0 434 37.1
FAN11G1845 Fragaria x ananassa HOM05D004273 ORTHO05D005041 7.7e-74 282.0 435 36.6
Rhsim13G0085100 Rhododendron simsii HOM05D004273 ORTHO05D005041 1.7e-73 280.8 439 36.9
arahy.Tifrunner.gnm1.ann1.0ME452 Arachis hypogaea HOM05D004273 ORTHO05D005041 2.2e-73 280.4 443 36.1
AUR62038361 Chenopodium quinoa HOM05D004273 ORTHO05D005041 2.2e-73 280.4 344 39.8
Glyma.15G039800 Glycine max HOM05D004273 ORTHO05D005041 2.2e-73 280.4 430 35.1
Aa31LG4G15500 Aethionema arabicum HOM05D004273 ORTHO05D005041 3.8e-73 279.6 426 36.2
CSS0043051 Camellia sinensis var. sinensis HOM05D004273 ORTHO05D005041 5.0e-73 279.3 435 36.3
MELO3C013689.2 Cucumis melo HOM05D004273 ORTHO05D005041 6.5e-73 278.9 444 38.1
Migut.E01325 Erythranthe guttata HOM05D004273 ORTHO05D005041 8.5e-73 278.5 439 36.4
Eucgr.B02383 Eucalyptus grandis HOM05D004273 ORTHO05D005041 8.5e-73 278.5 352 42.0
arahy.Tifrunner.gnm1.ann1.T00HES Arachis hypogaea HOM05D004273 ORTHO05D005041 1.5e-72 277.7 431 35.7
arahy.Tifrunner.gnm1.ann1.44D9RB Arachis hypogaea HOM05D004273 ORTHO05D005041 1.9e-72 277.3 439 35.8
Cc01_g12600 Coffea canephora HOM05D004273 ORTHO05D005041 1.9e-72 277.3 432 36.6
VMungo1080G0602 Vigna mungo HOM05D004273 ORTHO05D005041 5.5e-72 275.8 432 35.2
Cc02_g08070 Coffea canephora HOM05D004273 ORTHO05D005041 9.4e-72 275.0 350 40.6
Duzib170G0539 Durio zibethinus HOM05D004273 ORTHO05D005041 9.4e-72 275.0 340 40.0
Phvul.011G065600 Phaseolus vulgaris HOM05D004273 ORTHO05D005041 2.1e-71 273.9 423 34.5
SalBow8G5260 Salvia bowleyana HOM05D004273 ORTHO05D005041 2.1e-71 273.9 431 35.0
Lalb_Chr19g0137751 Lupinus albus HOM05D004273 ORTHO05D005041 2.7e-71 273.5 427 34.9
VMungo1127G1030 Vigna mungo HOM05D004273 ORTHO05D005041 2.3e-70 270.4 424 35.1
Glyma.13G334700 Glycine max HOM05D004273 ORTHO05D005041 3.0e-70 270.0 427 36.3
Pp3c9_11070 Physcomitrium patens HOM05D004273 ORTHO05D005041 3.0e-70 270.0 434 38.7
CSS0029075 Camellia sinensis var. sinensis HOM05D004273 ORTHO05D005041 6.7e-70 268.9 433 35.8
Hma1.2p1_0533F.1_g173530 Hydrangea macrophylla HOM05D004273 ORTHO05D005041 6.7e-70 268.9 429 36.4
Ciclev10028607m.g Citrus clementina HOM05D004273 ORTHO05D005041 8.8e-70 268.5 388 38.7
HPP92_019085 Vanilla planifolia HOM05D004273 ORTHO05D005041 1.2e-69 268.1 423 36.4
Psat7g217720 Pisum sativum HOM05D004273 ORTHO05D005041 2.0e-69 267.3 426 34.5
Lalb_Chr24g0394211 Lupinus albus HOM05D004273 ORTHO05D005041 2.6e-69 266.9 436 34.9
Sc06g0002640 Simmondsia chinensis HOM05D004273 ORTHO05D005041 5.7e-69 265.8 344 39.2
Actinidia07045 Actinidia chinensis HOM05D004273 ORTHO05D005041 7.5e-69 265.4 421 37.3
Ah.16g107130 Amaranthus hybridus HOM05D004273 ORTHO05D005041 1.3e-68 264.6 410 35.1
CAN.G1013.9 Capsicum annuum HOM05D004273 ORTHO05D005041 1.3e-68 264.6 435 33.6
EL10Ac7g15984 Beta vulgaris HOM05D004273 ORTHO05D005041 2.2e-68 263.8 424 35.6
Lsat_1_v5_gn_2_116561 Lactuca sativa HOM05D004273 ORTHO05D005041 2.8e-68 263.5 350 38.9
Sopen05g033050 Solanum pennellii HOM05D004273 ORTHO05D005041 1.1e-67 261.5 432 33.8
AUR62009603 Chenopodium quinoa HOM05D004273 ORTHO05D005041 1.4e-67 261.2 421 36.3
Peaxi162Scf00015g00152 Petunia axillaris HOM05D004273 ORTHO05D005041 1.4e-67 261.2 442 33.7
CSS0019329 Camellia sinensis var. sinensis HOM05D004273 ORTHO05D005041 1.8e-67 260.8 426 34.7
Solyc05g054570.3 Solanum lycopersicum HOM05D004273 ORTHO05D005041 2.4e-67 260.4 432 35.2
PGSC0003DMG400023525 Solanum tuberosum HOM05D004273 ORTHO05D005041 2.4e-67 260.4 429 34.7
Phvul.L004243 Phaseolus vulgaris HOM05D004273 ORTHO05D005041 5.3e-67 259.2 436 33.5
Hund04983 Selenicereus undatus HOM05D004273 ORTHO05D005041 7.0e-67 258.8 422 37.0
HanXRQChr14g0458231 Helianthus annuus HOM05D004273 ORTHO05D005041 2.7e-66 256.9 349 37.0
AUR62001817 Chenopodium quinoa HOM05D004273 ORTHO05D005041 1.3e-65 254.6 425 35.1
HanXRQChr07g0201161 Helianthus annuus HOM05D004273 ORTHO05D005041 1.3e-65 254.6 344 39.5
ECA238G2787 Erigeron canadensis HOM05D004273 ORTHO05D005041 1.7e-65 254.2 420 35.0
Nitab4.5_0001838g0010 Nicotiana tabacum HOM05D004273 ORTHO05D005041 8.5e-65 251.9 418 35.4
Actinidia02958 Actinidia chinensis HOM05D004273 ORTHO05D005041 4.2e-64 249.6 425 34.4
Zm00001eb211720 Zea mays HOM05D004273 ORTHO05D005041 5.5e-64 249.2 364 38.5
Nn2g10411 Nelumbo nucifera HOM05D004273 ORTHO05D005041 2.7e-63 246.9 370 39.2
Nitab4.5_0001304g0060 Nicotiana tabacum HOM05D004273 ORTHO05D005041 3.6e-63 246.5 317 42.0
Nitab4.5_0001831g0040 Nicotiana tabacum HOM05D004273 ORTHO05D005041 8.8e-62 241.9 339 37.8
Nitab4.5_0014877g0010 Nicotiana tabacum HOM05D004273 ORTHO05D005041 2.0e-61 240.7 339 37.2
AUR62040968 Chenopodium quinoa HOM05D004273 ORTHO05D005041 1.1e-59 235.0 298 39.9
unitig_747.g21363 Utricularia gibba HOM05D004273 ORTHO05D005041 3.1e-59 233.4 420 32.4
Sc06g0008260 Simmondsia chinensis HOM05D004273 ORTHO05D005041 9.1e-59 231.9 300 38.3
Hund12542 Selenicereus undatus HOM05D004273 ORTHO05D005041 1.7e-49 201.1 303 34.7
CBR_g4074 Chara braunii HOM05D004273 ORTHO05D005041 9.8e-45 185.3 342 31.9
Lj1A935G50 Lonicera japonica HOM05D004273 ORTHO05D005041 4.3e-40 169.9 448 27.7
Ah.08g219160 Amaranthus hybridus HOM05D004273 ORTHO05D005041 4.9e-36 156.4 228 36.8
vmacro03093 Vaccinium macrocarpon HOM05D004273 ORTHO05D005041 3.2e-35 153.7 233 39.9
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 3.3e-32 143.7 201 36.8
Actinidia07731 Actinidia chinensis HOM05D004273 ORTHO05D005041 6.4e-28 129.4 151 43.0
Actinidia07724 Actinidia chinensis HOM05D004273 ORTHO05D005041 3.8e-20 103.6 162 35.8
Ah.08g219150 Amaranthus hybridus HOM05D004273 ORTHO05D005041 3.9e-17 93.6 194 28.9
Lj8C85T7 Lonicera japonica HOM05D004273 ORTHO05D005041 1.8e-14 84.7 112 37.5
FAN11G3764 Fragaria x ananassa HOM05D004273 ORTHO05D005041 1.2e-13 82.0 300 23.3
vmacro03094 Vaccinium macrocarpon HOM05D004273 ORTHO05D005041 1.1e-11 75.5 74 43.2
Mapoly0091s0075 Marchantia polymorpha HOM05D004273 ORTHO05D031172 1.4e-11 75.1 184 29.9
DCAR_027649 Daucus carota HOM05D004273 ORTHO05D005041 2.4e-11 74.3 142 33.1
FvH4_3g35570 Fragaria vesca HOM05D004273 ORTHO05D005041 2.7e-10 70.9 286 22.7
unitig_748.g7756 Utricularia gibba HOM05D004273 ORTHO05D005041 7.8e-10 69.3 87 40.2
Pp3c25_5880 Physcomitrium patens HOM05D000394 ORTHO05D000299 1.7e-09 68.2 250 26.8
Pp3c5_15450 Physcomitrium patens HOM05D000394 ORTHO05D000299 3.0e-09 67.4 249 27.3
Nn1g04996 Nelumbo nucifera HOM05D001180 ORTHO05D001055 1.9e-08 64.7 241 23.7
Lalb_Chr14g0369251 Lupinus albus HOM05D001180 ORTHO05D001055 3.3e-08 63.9 237 23.2
Potri.007G025900 Populus trichocarpa HOM05D001180 ORTHO05D001055 3.3e-08 63.9 225 23.1
MCO07G371 Micromonas commoda HOM05D004273 ORTHO05D005041 4.3e-08 63.5 197 23.4
Gohir.D11G047200 Gossypium hirsutum HOM05D001180 ORTHO05D001055 5.6e-08 63.2 201 23.9
Thhalv10025882m.g Eutrema salsugineum HOM05D001180 ORTHO05D001055 7.3e-08 62.8 206 25.2
SGA_v2.0_scaffold326G48725 Striga asiatica HOM05D001180 ORTHO05D001055 7.3e-08 62.8 225 22.7
CANSAT01G0938 Cannabis sativa HOM05D001180 ORTHO05D001055 9.6e-08 62.4 209 23.4
MSTRG.25168 Avicennia marina HOM05D001180 ORTHO05D001055 2.1e-07 61.2 199 21.1
SalBow8G1398 Salvia bowleyana HOM05D001180 ORTHO05D001055 2.8e-07 60.8 200 22.5
SalBow8G2747 Salvia bowleyana HOM05D001180 ORTHO05D001055 2.8e-07 60.8 200 22.5
Peaxi162Scf00064g00422 Petunia axillaris HOM05D001180 ORTHO05D001055 3.6e-07 60.5 212 22.2
unitig_8.g3373 Utricularia gibba HOM05D001180 ORTHO05D001055 3.6e-07 60.5 198 25.3
Nitab4.5_0016172g0010 Nicotiana tabacum HOM05D001180 ORTHO05D001055 8.1e-07 59.3 212 21.7
Atru.chr13.1257 Acer truncatum HOM05D001180 ORTHO05D001055 1.1e-06 58.9 249 24.1
MSTRG.24290 Avicennia marina HOM05D001180 ORTHO05D001055 1.1e-06 58.9 199 22.1
Pp3c6_15520 Physcomitrium patens HOM05D000394 ORTHO05D000299 1.4e-06 58.5 223 26.9
Gorai.007G050700 Gossypium raimondii HOM05D001180 ORTHO05D001055 1.8e-06 58.2 170 24.1
C07p61820 Brassica napus HOM05D001180 ORTHO05D001055 2.4e-06 57.8 202 23.3
BolC7t46603H Brassica oleracea HOM05D001180 ORTHO05D001055 2.4e-06 57.8 202 23.3
DCAR_008713 Daucus carota HOM05D001180 ORTHO05D001055 4.0e-06 57.0 211 23.2
BraA03t15503Z Brassica rapa HOM05D001180 ORTHO05D001055 5.3e-06 56.6 202 23.3
Cfa018148 Carpinus fangiana HOM05D001180 ORTHO05D001055 6.9e-06 56.2 191 23.6


User provided reference genes

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