Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO259G0028 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 4.2e-133 478.0 242 100.0
SMO259G0038 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.9e-88 329.7 318 60.1
SMO229G0017 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 6.1e-55 218.4 129 87.6
SEGI_10192 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 1.1e-37 161.0 180 47.2
arahy.Tifrunner.gnm1.ann1.8DP3DE Arachis hypogaea HOM05D005051 ORTHO05D005945 2.2e-36 156.8 198 41.4
GSVIVG01011065001 Vitis vinifera HOM05D005051 ORTHO05D005945 6.3e-36 155.2 280 33.9
Mapoly0173s0012 Marchantia polymorpha HOM05D005051 ORTHO05D005945 7.0e-35 151.8 207 41.5
arahy.Tifrunner.gnm1.ann1.SK15G6 Arachis hypogaea HOM05D005051 ORTHO05D005945 1.6e-34 150.6 198 40.4
Ca_23236_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 2.0e-34 150.2 190 40.5
CDE05G0682 Ceratophyllum demersum HOM05D005051 ORTHO05D005945 4.5e-34 149.1 318 30.5
Sc17g0002210 Simmondsia chinensis HOM05D005051 ORTHO05D005945 5.9e-34 148.7 206 39.3
TAR365G1079 Trochodendron aralioides HOM05D005051 ORTHO05D005945 7.7e-34 148.3 179 43.6
ATR0564G162 Amborella trichopoda HOM05D005051 ORTHO05D005945 1.0e-33 147.9 181 42.5
Glyma.16G101100 Glycine max HOM05D005051 ORTHO05D005945 1.0e-33 147.9 182 41.8
Aqoxy4G00040 Aquilegia oxysepala HOM05D005051 ORTHO05D005945 1.7e-33 147.1 182 42.3
QL09p052190 Quercus lobata HOM05D005051 ORTHO05D005945 3.8e-33 146.0 179 42.5
QL09p053053 Quercus lobata HOM05D005051 ORTHO05D005945 3.8e-33 146.0 179 42.5
Dinv19188 Davidia involucrata HOM05D005051 ORTHO05D005945 5.0e-33 145.6 179 42.5
Phvul.010G020500 Phaseolus vulgaris HOM05D005051 ORTHO05D005945 5.0e-33 145.6 204 38.2
Psat4g199920 Pisum sativum HOM05D005051 ORTHO05D005945 5.0e-33 145.6 190 38.4
TPR.G17135 Trifolium pratense HOM05D005051 ORTHO05D005945 5.0e-33 145.6 190 39.5
AUR62001109 Chenopodium quinoa HOM05D005051 ORTHO05D005945 6.5e-33 145.2 197 40.6
VMungo1309G1922 Vigna mungo HOM05D005051 ORTHO05D005945 8.5e-33 144.8 182 41.2
CiPaw.03G147700 Carya illinoinensis HOM05D005051 ORTHO05D005945 1.1e-32 144.4 183 41.5
AUR62008933 Chenopodium quinoa HOM05D005051 ORTHO05D005945 1.1e-32 144.4 180 42.8
Glyma.03G064400 Glycine max HOM05D005051 ORTHO05D005945 1.1e-32 144.4 204 38.2
Medtr8g013045 Medicago truncatula HOM05D005051 ORTHO05D005945 1.1e-32 144.4 190 39.5
Sed0023522 Sechium edule HOM05D005051 ORTHO05D005945 1.5e-32 144.1 180 42.2
Ah.02g115620 Amaranthus hybridus HOM05D005051 ORTHO05D005945 1.9e-32 143.7 180 43.3
ClCG09G008890 Citrullus lanatus HOM05D005051 ORTHO05D005945 1.9e-32 143.7 180 41.7
Os11g0479232 Oryza sativa ssp. japonica HOM05D005051 ORTHO05D005945 1.9e-32 143.7 183 41.5
Lj3g0013392 Lotus japonicus HOM05D005051 ORTHO05D005945 2.5e-32 143.3 182 39.6
CSS0047345 Camellia sinensis var. sinensis HOM05D005051 ORTHO05D005945 3.2e-32 142.9 198 38.4
CsaV3_7G026000 Cucumis sativus L. HOM05D005051 ORTHO05D005945 3.2e-32 142.9 180 41.1
PSO339G3208 Papaver somniferum HOM05D005051 ORTHO05D005945 3.2e-32 142.9 183 42.1
PSO384G3368 Papaver somniferum HOM05D005051 ORTHO05D005945 4.2e-32 142.5 183 41.5
Lj2A1128T45 Lonicera japonica HOM05D005051 ORTHO05D005945 5.5e-32 142.1 188 40.4
Lalb_Chr13g0291091 Lupinus albus HOM05D005051 ORTHO05D005945 7.2e-32 141.7 198 39.4
Actinidia30063 Actinidia chinensis HOM05D005051 ORTHO05D005945 9.4e-32 141.4 183 39.9
Cfa002585 Carpinus fangiana HOM05D005051 ORTHO05D005945 9.4e-32 141.4 183 40.4
Haze_24821 Corylus avellana HOM05D005051 ORTHO05D005945 9.4e-32 141.4 183 40.4
TWI18G1080 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 9.4e-32 141.4 191 39.3
Migut.D02493 Erythranthe guttata HOM05D005051 ORTHO05D005945 1.2e-31 141.0 207 38.2
MD13G1217900 Malus domestica HOM05D005051 ORTHO05D005945 1.2e-31 141.0 183 40.4
Peaxi162Scf00398g00089 Petunia axillaris HOM05D005051 ORTHO05D005945 1.2e-31 141.0 179 42.5
SGA_v2.0_scaffold171G38944 Striga asiatica HOM05D005051 ORTHO05D005945 1.2e-31 141.0 183 39.9
Zm00001eb269850 Zea mays HOM05D005051 ORTHO05D005945 1.2e-31 141.0 205 40.5
MELO3C021052.2 Cucumis melo HOM05D005051 ORTHO05D005945 1.6e-31 140.6 180 41.1
DCAR_012658 Daucus carota HOM05D005051 ORTHO05D005945 2.1e-31 140.2 179 42.5
Nn2g14125 Nelumbo nucifera HOM05D005051 ORTHO05D005945 2.1e-31 140.2 182 39.6
AagrBONN_evm.TU.Sc2ySwM_368.938 Anthoceros agrestis HOM05D005051 ORTHO05D005945 2.7e-31 139.8 181 43.1
CAN.G3.1 Capsicum annuum HOM05D005051 ORTHO05D005945 3.6e-31 139.4 179 42.5
COL.COLO4_15648 Corchorus olitorius HOM05D005051 ORTHO05D005945 3.6e-31 139.4 179 40.8
FAN15G1450 Fragaria x ananassa HOM05D005051 ORTHO05D005945 3.6e-31 139.4 183 40.4
PGR083G2429 Punica granatum HOM05D005051 ORTHO05D005945 3.6e-31 139.4 183 39.3
SalBow6G3716 Salvia bowleyana HOM05D005051 ORTHO05D005945 3.6e-31 139.4 183 39.9
FAN27G0551 Fragaria x ananassa HOM05D005051 ORTHO05D005945 6.1e-31 138.7 183 39.9
Gohir.A07G158000 Gossypium hirsutum HOM05D005051 ORTHO05D005945 6.1e-31 138.7 179 39.7
Gohir.D07G164100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 6.1e-31 138.7 179 39.7
Gorai.001G188000 Gossypium raimondii HOM05D005051 ORTHO05D005945 6.1e-31 138.7 179 39.7
MD16G1223000 Malus domestica HOM05D005051 ORTHO05D005945 8.0e-31 138.3 183 39.9
TWI36G0473 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 8.0e-31 138.3 183 39.3
EL10Ac7g17867 Beta vulgaris HOM05D005051 ORTHO05D005945 1.0e-30 137.9 180 42.2
FvH4_2g18730 Fragaria vesca HOM05D005051 ORTHO05D005945 1.4e-30 137.5 183 39.9
FAN24G2416 Fragaria x ananassa HOM05D005051 ORTHO05D005945 1.4e-30 137.5 183 39.9
Potri.014G190600 Populus trichocarpa HOM05D005051 ORTHO05D005945 1.4e-30 137.5 325 29.8
Eucgr.E03305 Eucalyptus grandis HOM05D005051 ORTHO05D005945 1.8e-30 137.1 183 37.7
Solyc09g059960.3 Solanum lycopersicum HOM05D005051 ORTHO05D005945 1.8e-30 137.1 179 41.9
PGSC0003DMG400023098 Solanum tuberosum HOM05D005051 ORTHO05D005945 1.8e-30 137.1 179 41.9
Sopen09g023140 Solanum pennellii HOM05D005051 ORTHO05D005945 2.3e-30 136.7 179 41.3
Manes.13G046400 Manihot esculenta HOM05D005051 ORTHO05D005945 3.0e-30 136.3 179 40.8
Prupe.8G200800 Prunus persica HOM05D005051 ORTHO05D005945 3.0e-30 136.3 183 38.8
Sed0004391 Sechium edule HOM05D005051 ORTHO05D005945 3.0e-30 136.3 180 39.4
Thecc.01G222800 Theobroma cacao HOM05D005051 ORTHO05D005945 3.0e-30 136.3 179 40.2
Ciclev10019161m.g Citrus clementina HOM05D005051 ORTHO05D005945 4.0e-30 136.0 199 37.2
Sabra14G0142400 Salix brachista HOM05D005051 ORTHO05D005945 4.0e-30 136.0 181 40.9
RcHm_v2.0_Chr6g0284351 Rosa chinensis HOM05D005051 ORTHO05D005945 5.2e-30 135.6 183 39.3
HanXRQChr04g0108251 Helianthus annuus HOM05D005051 ORTHO05D005945 6.7e-30 135.2 179 38.0
Oeu018495.2 Olea europaea HOM05D005051 ORTHO05D005945 6.7e-30 135.2 180 39.4
Nitab4.5_0000045g0340 Nicotiana tabacum HOM05D005051 ORTHO05D005945 8.8e-30 134.8 179 40.2
Duzib138G1384 Durio zibethinus HOM05D005051 ORTHO05D005945 1.1e-29 134.4 183 38.3
ECA236G0910 Erigeron canadensis HOM05D005051 ORTHO05D005945 1.1e-29 134.4 179 39.1
THA.LOC104802665 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 1.1e-29 134.4 178 39.3
MSTRG.18843 Avicennia marina HOM05D005051 ORTHO05D005945 2.0e-29 133.7 178 40.4
Cpa.g.sc8.135 Carica papaya HOM05D005051 ORTHO05D005945 2.6e-29 133.3 196 37.8
Cc01_g16860 Coffea canephora HOM05D005051 ORTHO05D005945 2.6e-29 133.3 183 39.9
vmacro02772 Vaccinium macrocarpon HOM05D005051 ORTHO05D005945 4.4e-29 132.5 175 40.6
Duzib211G0096 Durio zibethinus HOM05D005051 ORTHO05D005945 5.7e-29 132.1 181 37.6
AT3G07140 Arabidopsis thaliana HOM05D005051 ORTHO05D005945 7.5e-29 131.7 178 39.3
AL3G18390 Arabidopsis lyrata HOM05D005051 ORTHO05D005945 1.3e-28 131.0 178 39.3
Lsat_1_v5_gn_8_89520 Lactuca sativa HOM05D005051 ORTHO05D005945 1.3e-28 131.0 178 36.5
Sp3g06080 Schrenkiella parvula HOM05D005051 ORTHO05D005945 2.2e-28 130.2 178 39.9
THA.LOC104818965 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 2.8e-28 129.8 178 38.2
Carub.0003s0666 Capsella rubella HOM05D005051 ORTHO05D005945 8.2e-28 128.3 178 38.2
CARHR081740 Cardamine hirsuta HOM05D005051 ORTHO05D005945 8.2e-28 128.3 182 37.4
Thhalv10020265m.g Eutrema salsugineum HOM05D005051 ORTHO05D005945 1.1e-27 127.9 178 38.2
BcaC05g29842 Brassica carinata HOM05D005051 ORTHO05D005945 1.4e-27 127.5 178 39.3
C05p60240 Brassica napus HOM05D005051 ORTHO05D005945 1.4e-27 127.5 178 39.3
BolC5t34674H Brassica oleracea HOM05D005051 ORTHO05D005945 1.4e-27 127.5 178 39.3
Aa31LG5G17700 Aethionema arabicum HOM05D005051 ORTHO05D005945 3.1e-27 126.3 178 37.1
BcaC05g29752 Brassica carinata HOM05D005051 ORTHO05D005945 3.1e-27 126.3 178 39.3
BraA05t22834Z Brassica rapa HOM05D005051 ORTHO05D005945 3.1e-27 126.3 178 38.8
Glyma.13G182400 Glycine max HOM05D005051 ORTHO05D005945 3.1e-27 126.3 194 38.7
A05p41070 Brassica napus HOM05D005051 ORTHO05D005945 4.1e-27 125.9 178 38.8
Gohir.A11G139100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 9.1e-27 124.8 179 36.9
Atru.chr6.1506 Acer truncatum HOM05D005051 ORTHO05D005945 1.6e-26 124.0 181 34.3
Gohir.D11G145300 Gossypium hirsutum HOM05D005051 ORTHO05D005945 1.6e-26 124.0 183 36.1
Pp3c21_19350 Physcomitrium patens HOM05D005051 ORTHO05D005945 2.7e-26 123.2 199 40.7
Oeu035785.1 Olea europaea HOM05D005051 ORTHO05D005945 5.0e-25 119.0 224 32.6
CBR_g44939 Chara braunii HOM05D005051 ORTHO05D005945 1.5e-24 117.5 197 35.0
Gorai.007G155800 Gossypium raimondii HOM05D005051 ORTHO05D005945 9.4e-24 114.8 296 29.1
Nitab4.5_0000345g0090 Nicotiana tabacum HOM05D005051 ORTHO05D000055 1.8e-22 110.5 106 50.9
HPP92_008216 Vanilla planifolia HOM05D005051 ORTHO05D005945 1.8e-22 110.5 105 51.4
SHI23570 Sapria himalayana HOM05D005051 ORTHO05D005945 4.4e-21 105.9 211 32.2
SMO259G0055 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 7.0e-19 98.6 167 46.7
Sp2g19120 Schrenkiella parvula HOM05D005051 ORTHO05D005945 1.6e-18 97.4 167 31.1
Medtr8g013050 Medicago truncatula HOM05D005051 ORTHO05D005945 2.0e-18 97.1 158 32.3
Glyma.13G059866 Glycine max HOM05D005051 ORTHO05D005945 1.9e-16 90.5 123 39.0
MCO05G006 Micromonas commoda HOM05D005051 ORTHO05D005945 8.8e-14 81.6 211 26.5
SMO248G0001 Selaginella moellendorffii HOM05D012679 ORTHO05D376469 1.2e-13 81.3 156 44.2
Cre10.g441100 Chlamydomonas reinhardtii HOM05D005051 ORTHO05D005945 7.5e-13 78.6 182 30.2
Glyma.13G196100 Glycine max HOM05D005051 ORTHO05D005945 1.7e-12 77.4 123 36.6
SMO174G0204 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.2e-12 77.0 45 86.7
SMO259G0015 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 2.8e-12 76.6 45 86.7
SMO259G0051 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 2.8e-12 76.6 45 86.7
SMO108G0001 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 3.7e-12 76.3 45 86.7
SMO108G0002 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 3.7e-12 76.3 45 86.7
SMO108G0003 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 3.7e-12 76.3 45 86.7
SMO108G0004 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 3.7e-12 76.3 45 86.7
SMO108G0005 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 3.7e-12 76.3 45 86.7
SMO313G0001 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 6.3e-12 75.5 45 84.4
SMO259G0021 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.1e-11 74.7 45 84.4
SMO259G0024 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.1e-11 74.7 45 84.4
Sed0011580 Sechium edule HOM05D005051 ORTHO05D005945 3.5e-10 69.7 276 25.0
unitig_899.g15018 Utricularia gibba HOM05D003904 ORTHO05D004378 1.3e-09 67.8 57 56.1
QL09p053457 Quercus lobata HOM05D005051 ORTHO05D005945 1.7e-09 67.4 74 43.2
Cfa025345 Carpinus fangiana HOM05D005051 ORTHO05D005945 2.8e-07 60.1 188 30.3
SEGI_29510 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 4.7e-07 59.3 82 37.8
SMO229G0003 Selaginella moellendorffii HOM05D012679 ORTHO05D375076 6.1e-07 58.9 34 88.2
SMO229G0005 Selaginella moellendorffii HOM05D012679 ORTHO05D374820 6.1e-07 58.9 34 88.2
SMO229G0018 Selaginella moellendorffii HOM05D012679 ORTHO05D379110 6.1e-07 58.9 34 88.2
SMO229G0040 Selaginella moellendorffii HOM05D012679 ORTHO05D379409 6.1e-07 58.9 34 88.2
SMO259G0027 Selaginella moellendorffii HOM05D012679 ORTHO05D375777 6.1e-07 58.9 34 88.2
SMO259G0053 Selaginella moellendorffii HOM05D012679 ORTHO05D378244 6.1e-07 58.9 34 88.2
Glyma.13G258901 Glycine max HOM05D005051 ORTHO05D005945 1.0e-06 58.2 56 50.0
Glyma.13G368066 Glycine max HOM05D005051 ORTHO05D005945 8.9e-06 55.1 56 48.2


User provided reference genes

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