Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO259G0024 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.3e-207 726.1 360 100.0
SMO259G0021 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 3.1e-188 661.8 376 89.6
SMO174G0204 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 9.5e-113 411.0 280 79.3
SMO259G0038 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 3.7e-101 372.5 377 59.7
SMO259G0015 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 3.9e-90 335.9 182 94.5
SMO259G0051 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 1.9e-89 333.6 182 94.0
SMO313G0001 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 4.3e-89 332.4 182 93.4
SMO259G0055 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 5.6e-89 332.0 179 95.0
SMO108G0002 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 2.5e-81 306.6 300 63.0
SMO108G0001 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.2e-77 293.5 158 94.3
SMO108G0003 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.2e-77 293.5 158 94.3
SMO108G0004 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.2e-77 293.5 158 94.3
SMO108G0005 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.2e-77 293.5 158 94.3
CDE05G0682 Ceratophyllum demersum HOM05D005051 ORTHO05D005945 4.3e-49 199.5 371 37.7
THA.LOC104818965 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 1.6e-48 197.6 366 36.6
AL3G18390 Arabidopsis lyrata HOM05D005051 ORTHO05D005945 2.1e-48 197.2 368 36.1
Mapoly0173s0012 Marchantia polymorpha HOM05D005051 ORTHO05D005945 2.8e-48 196.8 323 40.6
Lj2A1128T45 Lonicera japonica HOM05D005051 ORTHO05D005945 3.7e-48 196.4 376 37.2
MD13G1217900 Malus domestica HOM05D005051 ORTHO05D005945 3.7e-48 196.4 391 35.5
THA.LOC104802665 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 4.8e-48 196.1 366 38.8
Carub.0003s0666 Capsella rubella HOM05D005051 ORTHO05D005945 6.3e-48 195.7 367 37.3
Lsat_1_v5_gn_8_89520 Lactuca sativa HOM05D005051 ORTHO05D005945 6.3e-48 195.7 254 46.1
MD16G1223000 Malus domestica HOM05D005051 ORTHO05D005945 8.2e-48 195.3 377 37.4
SEGI_10192 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 1.1e-47 194.9 277 44.0
SEGI_29510 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 1.1e-47 194.9 277 44.0
Aa31LG5G17700 Aethionema arabicum HOM05D005051 ORTHO05D005945 1.4e-47 194.5 369 37.1
FAN15G1450 Fragaria x ananassa HOM05D005051 ORTHO05D005945 1.8e-47 194.1 279 44.1
ATR0564G162 Amborella trichopoda HOM05D005051 ORTHO05D005945 3.1e-47 193.4 237 48.5
Cfa002585 Carpinus fangiana HOM05D005051 ORTHO05D005945 3.1e-47 193.4 388 37.6
Oeu018495.2 Olea europaea HOM05D005051 ORTHO05D005945 5.3e-47 192.6 367 36.5
vmacro02772 Vaccinium macrocarpon HOM05D005051 ORTHO05D005945 5.3e-47 192.6 273 44.7
AT3G07140 Arabidopsis thaliana HOM05D005051 ORTHO05D005945 6.9e-47 192.2 368 35.6
Prupe.8G200800 Prunus persica HOM05D005051 ORTHO05D005945 6.9e-47 192.2 279 44.8
unitig_899.g15019 Utricularia gibba HOM05D005051 ORTHO05D005945 1.5e-46 191.0 373 37.5
GSVIVG01011065001 Vitis vinifera HOM05D005051 ORTHO05D005945 2.0e-46 190.7 361 37.4
Oeu035785.1 Olea europaea HOM05D005051 ORTHO05D005945 2.6e-46 190.3 368 37.0
Thhalv10020265m.g Eutrema salsugineum HOM05D005051 ORTHO05D005945 3.4e-46 189.9 369 35.5
CARHR081740 Cardamine hirsuta HOM05D005051 ORTHO05D005945 4.5e-46 189.5 368 37.2
Dinv19188 Davidia involucrata HOM05D005051 ORTHO05D005945 4.5e-46 189.5 278 41.4
FvH4_2g18730 Fragaria vesca HOM05D005051 ORTHO05D005945 4.5e-46 189.5 279 43.4
FAN24G2416 Fragaria x ananassa HOM05D005051 ORTHO05D005945 4.5e-46 189.5 279 43.4
RcHm_v2.0_Chr6g0284351 Rosa chinensis HOM05D005051 ORTHO05D005945 4.5e-46 189.5 279 43.7
Actinidia30063 Actinidia chinensis HOM05D005051 ORTHO05D005945 5.9e-46 189.1 273 45.1
Cc01_g16860 Coffea canephora HOM05D005051 ORTHO05D005945 7.6e-46 188.7 297 41.8
FAN27G0551 Fragaria x ananassa HOM05D005051 ORTHO05D005945 7.6e-46 188.7 279 43.4
BcaC05g29752 Brassica carinata HOM05D005051 ORTHO05D005945 1.3e-45 188.0 368 36.7
MELO3C021052.2 Cucumis melo HOM05D005051 ORTHO05D005945 1.3e-45 188.0 272 42.3
SGA_v2.0_scaffold171G38944 Striga asiatica HOM05D005051 ORTHO05D005945 1.3e-45 188.0 366 36.9
MSTRG.18843 Avicennia marina HOM05D005051 ORTHO05D005945 2.2e-45 187.2 378 34.9
Nitab4.5_0000045g0340 Nicotiana tabacum HOM05D005051 ORTHO05D005945 2.2e-45 187.2 298 40.9
QL09p052190 Quercus lobata HOM05D005051 ORTHO05D005945 2.2e-45 187.2 237 47.3
QL09p053053 Quercus lobata HOM05D005051 ORTHO05D005945 2.2e-45 187.2 237 47.3
COL.COLO4_15648 Corchorus olitorius HOM05D005051 ORTHO05D005945 2.9e-45 186.8 274 44.5
SalBow6G3716 Salvia bowleyana HOM05D005051 ORTHO05D005945 2.9e-45 186.8 267 44.9
Sc17g0002210 Simmondsia chinensis HOM05D005051 ORTHO05D005945 2.9e-45 186.8 268 43.7
BolC5t34674H Brassica oleracea HOM05D005051 ORTHO05D005945 5.0e-45 186.0 366 36.9
Cpa.g.sc8.135 Carica papaya HOM05D005051 ORTHO05D005945 5.0e-45 186.0 273 43.6
CiPaw.03G147700 Carya illinoinensis HOM05D005051 ORTHO05D005945 5.0e-45 186.0 278 42.8
Haze_24821 Corylus avellana HOM05D005051 ORTHO05D005945 5.0e-45 186.0 308 41.6
Thecc.01G222800 Theobroma cacao HOM05D005051 ORTHO05D005945 5.0e-45 186.0 392 36.7
A05p41070 Brassica napus HOM05D005051 ORTHO05D005945 6.5e-45 185.7 369 38.5
Atru.chr6.1506 Acer truncatum HOM05D005051 ORTHO05D005945 8.4e-45 185.3 272 41.9
Migut.D02493 Erythranthe guttata HOM05D005051 ORTHO05D005945 8.4e-45 185.3 227 47.1
ClCG09G008890 Citrullus lanatus HOM05D005051 ORTHO05D005945 1.9e-44 184.1 272 41.2
C05p60240 Brassica napus HOM05D005051 ORTHO05D005945 2.5e-44 183.7 366 36.6
BraA05t22834Z Brassica rapa HOM05D005051 ORTHO05D005945 2.5e-44 183.7 369 37.7
BcaC05g29842 Brassica carinata HOM05D005051 ORTHO05D005945 3.2e-44 183.3 366 36.6
CsaV3_7G026000 Cucumis sativus L. HOM05D005051 ORTHO05D005945 3.2e-44 183.3 272 41.2
ECA236G0910 Erigeron canadensis HOM05D005051 ORTHO05D005945 3.2e-44 183.3 270 43.0
Peaxi162Scf00398g00089 Petunia axillaris HOM05D005051 ORTHO05D005945 3.2e-44 183.3 277 41.2
TAR365G1079 Trochodendron aralioides HOM05D005051 ORTHO05D005945 3.2e-44 183.3 388 37.1
DCAR_012658 Daucus carota HOM05D005051 ORTHO05D005945 5.5e-44 182.6 273 42.1
HanXRQChr04g0108251 Helianthus annuus HOM05D005051 ORTHO05D005945 9.3e-44 181.8 258 43.8
Sopen09g023140 Solanum pennellii HOM05D005051 ORTHO05D005945 9.3e-44 181.8 279 40.5
CSS0047345 Camellia sinensis var. sinensis HOM05D005051 ORTHO05D005945 1.2e-43 181.4 274 43.8
Lalb_Chr13g0291091 Lupinus albus HOM05D005051 ORTHO05D005945 1.2e-43 181.4 274 44.2
PGSC0003DMG400023098 Solanum tuberosum HOM05D005051 ORTHO05D005945 1.2e-43 181.4 277 41.2
Medtr8g013045 Medicago truncatula HOM05D005051 ORTHO05D005945 1.6e-43 181.0 383 35.5
Potri.014G190600 Populus trichocarpa HOM05D005051 ORTHO05D005945 1.6e-43 181.0 382 35.6
Aqoxy4G00040 Aquilegia oxysepala HOM05D005051 ORTHO05D005945 2.1e-43 180.6 383 36.6
Manes.13G046400 Manihot esculenta HOM05D005051 ORTHO05D005945 2.1e-43 180.6 278 42.8
Sed0023522 Sechium edule HOM05D005051 ORTHO05D005945 2.1e-43 180.6 284 40.5
Solyc09g059960.3 Solanum lycopersicum HOM05D005051 ORTHO05D005945 2.1e-43 180.6 292 40.1
AUR62008933 Chenopodium quinoa HOM05D005051 ORTHO05D005945 4.6e-43 179.5 272 42.3
Sed0004391 Sechium edule HOM05D005051 ORTHO05D005945 6.1e-43 179.1 277 41.2
Gorai.001G188000 Gossypium raimondii HOM05D005051 ORTHO05D005945 7.9e-43 178.7 280 42.1
VMungo1309G1922 Vigna mungo HOM05D005051 ORTHO05D005945 7.9e-43 178.7 382 35.3
Ciclev10019161m.g Citrus clementina HOM05D005051 ORTHO05D005945 1.0e-42 178.3 275 40.7
Duzib211G0096 Durio zibethinus HOM05D005051 ORTHO05D005945 1.3e-42 177.9 275 42.5
Gohir.A11G139100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 1.3e-42 177.9 386 35.0
Glyma.03G064400 Glycine max HOM05D005051 ORTHO05D005945 1.8e-42 177.6 381 35.7
Gohir.D07G164100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 1.8e-42 177.6 280 41.8
Duzib138G1384 Durio zibethinus HOM05D005051 ORTHO05D005945 2.3e-42 177.2 272 42.3
Eucgr.E03305 Eucalyptus grandis HOM05D005051 ORTHO05D005945 2.3e-42 177.2 274 42.7
TWI36G0473 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 2.3e-42 177.2 272 41.5
arahy.Tifrunner.gnm1.ann1.8DP3DE Arachis hypogaea HOM05D005051 ORTHO05D005945 3.0e-42 176.8 277 42.2
Gohir.A07G158000 Gossypium hirsutum HOM05D005051 ORTHO05D005945 3.0e-42 176.8 385 36.9
Nn2g14125 Nelumbo nucifera HOM05D005051 ORTHO05D005945 3.0e-42 176.8 238 44.5
CAN.G3.1 Capsicum annuum HOM05D005051 ORTHO05D005945 6.7e-42 175.6 280 40.0
Hund18405 Selenicereus undatus HOM05D005051 ORTHO05D005945 6.7e-42 175.6 272 40.8
Phvul.010G020500 Phaseolus vulgaris HOM05D005051 ORTHO05D005945 8.7e-42 175.3 272 41.9
arahy.Tifrunner.gnm1.ann1.SK15G6 Arachis hypogaea HOM05D005051 ORTHO05D005945 1.1e-41 174.9 277 41.9
Ca_23236_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 1.1e-41 174.9 248 43.5
PGR083G2429 Punica granatum HOM05D005051 ORTHO05D005945 1.5e-41 174.5 237 43.5
Lj3g0013392 Lotus japonicus HOM05D005051 ORTHO05D005945 1.9e-41 174.1 276 41.7
PSO339G3208 Papaver somniferum HOM05D005051 ORTHO05D005945 1.9e-41 174.1 239 43.1
Psat4g199920 Pisum sativum HOM05D005051 ORTHO05D005945 1.9e-41 174.1 284 40.8
AUR62001109 Chenopodium quinoa HOM05D005051 ORTHO05D005945 2.5e-41 173.7 273 41.8
PSO384G3368 Papaver somniferum HOM05D005051 ORTHO05D005945 2.5e-41 173.7 283 40.3
Sabra14G0142400 Salix brachista HOM05D005051 ORTHO05D005945 4.3e-41 172.9 303 39.6
Glyma.16G101100 Glycine max HOM05D005051 ORTHO05D005945 5.7e-41 172.6 284 41.2
Gorai.007G155800 Gossypium raimondii HOM05D005051 ORTHO05D005945 5.7e-41 172.6 280 41.1
TPR.G17135 Trifolium pratense HOM05D005051 ORTHO05D005945 5.7e-41 172.6 383 35.0
Ah.02g115620 Amaranthus hybridus HOM05D005051 ORTHO05D005945 7.4e-41 172.2 284 40.8
EL10Ac7g17867 Beta vulgaris HOM05D005051 ORTHO05D005945 7.4e-41 172.2 268 41.0
SHI23570 Sapria himalayana HOM05D005051 ORTHO05D005945 1.6e-40 171.0 279 40.9
Gohir.D11G145300 Gossypium hirsutum HOM05D005051 ORTHO05D005945 2.2e-40 170.6 280 40.7
Zm00001eb269850 Zea mays HOM05D005051 ORTHO05D005945 2.0e-38 164.1 264 39.0
Actinidia31469 Actinidia chinensis HOM05D005051 ORTHO05D005945 1.1e-36 158.3 213 45.5
SMO259G0027 Selaginella moellendorffii HOM05D012679 ORTHO05D375777 1.9e-36 157.5 86 97.7
SMO229G0003 Selaginella moellendorffii HOM05D012679 ORTHO05D375076 5.5e-36 156.0 86 96.5
SMO229G0005 Selaginella moellendorffii HOM05D012679 ORTHO05D374820 5.5e-36 156.0 86 96.5
SMO229G0018 Selaginella moellendorffii HOM05D012679 ORTHO05D379110 5.5e-36 156.0 86 96.5
SMO229G0040 Selaginella moellendorffii HOM05D012679 ORTHO05D379409 5.5e-36 156.0 86 96.5
SMO259G0053 Selaginella moellendorffii HOM05D012679 ORTHO05D378244 5.5e-36 156.0 86 96.5
SMO248G0001 Selaginella moellendorffii HOM05D012679 ORTHO05D376469 1.6e-35 154.5 86 95.3
CBR_g44939 Chara braunii HOM05D005051 ORTHO05D005945 1.0e-34 151.8 357 33.3
Medtr8g013050 Medicago truncatula HOM05D005051 ORTHO05D005945 1.8e-34 151.0 237 39.7
COL.COLO4_36899 Corchorus olitorius HOM05D005051 ORTHO05D005945 3.3e-33 146.7 160 51.9
Pp3c21_19350 Physcomitrium patens HOM05D005051 ORTHO05D005945 7.4e-33 145.6 237 41.4
AagrBONN_evm.TU.Sc2ySwM_368.938 Anthoceros agrestis HOM05D005051 ORTHO05D005945 2.3e-26 124.0 190 41.6
Sp3g06080 Schrenkiella parvula HOM05D005051 ORTHO05D005945 5.7e-25 119.4 266 33.8
Ca_23237_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 2.4e-23 114.0 170 42.9
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 5.5e-20 102.8 256 33.2
QL09p053462 Quercus lobata HOM05D005051 ORTHO05D005945 1.8e-18 97.8 370 27.8
Sp2g19120 Schrenkiella parvula HOM05D005051 ORTHO05D005945 9.7e-17 92.0 364 27.5
SMO229G0017 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 6.3e-16 89.4 54 83.3
MCO05G006 Micromonas commoda HOM05D005051 ORTHO05D005945 7.0e-15 85.9 155 38.1
Medtr6g061260 Medicago truncatula HOM05D005051 ORTHO05D005945 7.7e-14 82.4 111 44.1
SMO259G0028 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.2e-11 75.1 45 84.4
Cfa025345 Carpinus fangiana HOM05D005051 ORTHO05D005945 2.7e-11 73.9 156 30.8
Cre10.g441100 Chlamydomonas reinhardtii HOM05D005051 ORTHO05D005945 4.7e-11 73.2 191 34.0


User provided reference genes

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