Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 5.7e-98 360.9 184 100.0
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 4.6e-87 324.7 197 86.8
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.0e-86 323.6 197 86.8
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 6.6e-86 320.9 197 86.3
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.1e-85 320.1 197 86.3
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.5e-61 240.0 184 73.4
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 5.6e-61 238.0 173 75.1
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 2.4e-56 222.6 197 55.8
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 2.3e-54 216.1 197 51.8
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 1.1e-51 207.2 195 54.4
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 3.4e-50 202.2 197 50.8
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 3.8e-49 198.7 197 49.2
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 3.8e-49 198.7 197 48.2
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 4.9e-49 198.4 197 49.2
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 1.1e-48 197.2 197 48.7
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 1.1e-48 197.2 197 48.7
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 1.1e-48 197.2 197 48.7
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 1.1e-48 197.2 197 48.7
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 1.4e-48 196.8 197 48.7
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 1.4e-48 196.8 197 48.7
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 1.4e-48 196.8 197 48.7
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 1.4e-48 196.8 197 47.7
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 2.4e-48 196.1 197 46.7
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 4.2e-48 195.3 197 47.7
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 4.2e-48 195.3 197 48.2
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 4.2e-48 195.3 197 48.2
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 4.2e-48 195.3 197 48.2
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 5.4e-48 194.9 197 48.2
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 7.1e-48 194.5 197 48.2
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 7.1e-48 194.5 197 48.2
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 9.3e-48 194.1 197 47.2
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 9.3e-48 194.1 197 47.7
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 1.2e-47 193.7 197 48.7
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 1.6e-47 193.4 197 46.2
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 2.1e-47 193.0 197 46.2
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 2.1e-47 193.0 197 46.2
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 2.7e-47 192.6 197 47.2
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 3.5e-47 192.2 197 46.2
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 4.6e-47 191.8 197 46.7
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 4.6e-47 191.8 197 47.2
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 4.6e-47 191.8 197 45.7
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 6.0e-47 191.4 197 47.7
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 6.0e-47 191.4 197 47.2
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 7.9e-47 191.0 197 48.2
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 7.9e-47 191.0 197 47.2
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 1.0e-46 190.7 197 47.2
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 1.3e-46 190.3 197 45.7
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 1.3e-46 190.3 197 47.2
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 1.3e-46 190.3 197 46.7
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 1.3e-46 190.3 197 47.2
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 1.8e-46 189.9 197 46.7
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 1.8e-46 189.9 197 47.7
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 1.8e-46 189.9 197 46.7
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 1.8e-46 189.9 197 47.7
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 2.3e-46 189.5 197 46.7
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 2.3e-46 189.5 197 47.2
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 2.3e-46 189.5 197 44.7
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 3.0e-46 189.1 207 44.4
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 3.0e-46 189.1 197 44.7
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 3.9e-46 188.7 197 45.2
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 3.9e-46 188.7 197 44.7
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 3.9e-46 188.7 197 45.7
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 5.1e-46 188.3 197 49.2
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 6.7e-46 188.0 207 44.4
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 6.7e-46 188.0 197 46.7
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 6.7e-46 188.0 197 47.2
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 8.7e-46 187.6 197 46.2
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 1.1e-45 187.2 197 46.2
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 1.1e-45 187.2 198 46.0
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 1.5e-45 186.8 197 46.7
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 1.5e-45 186.8 197 44.2
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 4.3e-45 185.3 207 43.5
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 4.3e-45 185.3 198 47.0
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 5.6e-45 184.9 197 45.7
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 7.4e-45 184.5 197 47.7
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 7.4e-45 184.5 197 43.7
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 7.4e-45 184.5 197 43.7
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 9.6e-45 184.1 197 44.7
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 9.6e-45 184.1 198 46.5
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 9.6e-45 184.1 203 44.8
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 1.3e-44 183.7 198 46.5
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 1.6e-44 183.3 197 47.2
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 2.1e-44 183.0 197 46.7
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 2.8e-44 182.6 199 46.2
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 2.8e-44 182.6 197 44.7
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 2.8e-44 182.6 197 43.1
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 3.7e-44 182.2 197 45.7
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 3.7e-44 182.2 197 47.2
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 3.7e-44 182.2 198 46.5
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 4.8e-44 181.8 195 46.2
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 8.1e-44 181.0 198 46.0
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 1.1e-43 180.6 197 44.7
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 1.1e-43 180.6 197 44.7
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 1.4e-43 180.3 197 42.6
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 1.8e-43 179.9 198 45.5
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 2.4e-43 179.5 197 44.2
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 2.4e-43 179.5 197 44.7
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 4.0e-43 178.7 197 46.2
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 5.3e-43 178.3 197 46.2
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 5.3e-43 178.3 197 44.7
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 6.9e-43 177.9 197 44.7
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 6.9e-43 177.9 197 44.7
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 6.9e-43 177.9 197 44.7
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 1.2e-42 177.2 197 44.7
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 2.0e-42 176.4 197 43.7
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 3.4e-42 175.6 184 46.2
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 3.4e-42 175.6 197 44.2
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 4.5e-42 175.3 197 44.2
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 4.5e-42 175.3 197 44.2
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 4.5e-42 175.3 197 43.7
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 5.8e-42 174.9 197 45.2
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 5.8e-42 174.9 197 45.2
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 1.0e-41 174.1 197 44.7
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 1.3e-41 173.7 197 43.7
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 4.9e-41 171.8 199 43.7
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 8.4e-41 171.0 197 42.6
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 1.1e-40 170.6 197 43.1
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 7.1e-40 167.9 197 42.1
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 2.7e-39 166.0 197 42.6
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 3.5e-39 165.6 197 43.7
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 3.5e-39 165.6 197 43.7
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 4.6e-39 165.2 197 42.1
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 8.7e-38 161.0 197 42.1
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 5.7e-37 158.3 184 41.8
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 5.7e-37 158.3 197 42.1
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 2.8e-36 156.0 189 40.2
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 1.1e-35 154.1 213 40.8
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 1.5e-34 150.2 197 39.6
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.8e-27 126.7 181 40.9
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 3.1e-27 125.9 127 46.5
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 9.0e-27 124.4 126 47.6
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 1.1e-21 107.5 187 32.1
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.8e-19 100.1 174 37.9
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.8e-19 100.1 166 40.4
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 1.5e-18 97.1 91 50.5
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 5.9e-18 95.1 107 45.8
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 7.7e-18 94.7 76 56.6
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.0e-17 94.4 107 45.8
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.7e-17 93.6 187 34.8
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 2.9e-17 92.8 77 54.5
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 3.8e-17 92.4 192 31.2
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 6.5e-17 91.7 192 32.3
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.9e-16 90.1 77 53.2
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 3.0e-14 82.8 142 36.6
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 2.6e-13 79.7 81 51.9
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 2.6e-13 79.7 81 51.9
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 4.4e-13 79.0 176 33.0
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.4e-11 73.9 59 55.9
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.2e-10 70.9 62 50.0
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.6e-10 70.5 61 50.8
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.6e-10 69.7 175 31.4
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.0e-09 67.8 62 48.4
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 5.0e-09 65.5 55 50.9
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 9.4e-08 61.2 68 44.1


User provided reference genes

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