Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 4.9e-103 377.9 197 100.0
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 5.4e-102 374.4 197 99.0
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 7.8e-101 370.5 197 98.5
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.3e-100 369.8 197 98.5
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 4.1e-86 321.6 197 86.8
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 1.3e-66 256.9 197 61.4
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 6.2e-66 254.6 197 58.9
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 8.4e-63 244.2 197 71.6
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 5.4e-62 241.5 195 60.0
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 4.6e-61 238.4 186 72.0
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 1.3e-60 236.9 197 56.9
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 3.0e-60 235.7 197 55.8
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 8.7e-60 234.2 197 54.3
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 1.1e-59 233.8 197 55.3
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 1.9e-59 233.0 197 55.3
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 3.3e-59 232.3 197 54.8
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 4.3e-59 231.9 197 53.8
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 9.6e-59 230.7 197 54.3
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 1.6e-58 229.9 197 53.8
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 1.6e-58 229.9 197 53.8
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 1.6e-58 229.9 197 53.8
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 2.1e-58 229.6 197 53.8
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 2.1e-58 229.6 197 53.8
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 4.8e-58 228.4 197 53.8
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 4.8e-58 228.4 197 53.8
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 4.8e-58 228.4 197 53.8
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 6.2e-58 228.0 197 53.8
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 1.1e-57 227.3 197 51.8
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 1.4e-57 226.9 197 53.8
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 1.8e-57 226.5 197 53.8
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 2.4e-57 226.1 197 51.8
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 3.1e-57 225.7 197 51.8
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 3.1e-57 225.7 197 53.3
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 4.0e-57 225.3 197 52.8
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 5.3e-57 224.9 197 52.3
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 5.3e-57 224.9 197 53.3
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 6.9e-57 224.6 197 51.3
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 6.9e-57 224.6 197 52.3
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 9.0e-57 224.2 197 52.8
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 9.0e-57 224.2 197 53.3
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 1.2e-56 223.8 197 53.8
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 1.2e-56 223.8 197 51.3
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 1.5e-56 223.4 197 52.3
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 2.6e-56 222.6 197 52.3
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 2.6e-56 222.6 197 53.3
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 2.6e-56 222.6 197 51.3
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 2.6e-56 222.6 197 52.3
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 2.6e-56 222.6 197 53.3
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 2.6e-56 222.6 197 53.3
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 3.4e-56 222.2 197 52.8
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 3.4e-56 222.2 197 53.3
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 5.8e-56 221.5 197 50.8
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 7.6e-56 221.1 197 50.8
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 9.9e-56 220.7 197 52.8
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 9.9e-56 220.7 197 50.3
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 9.9e-56 220.7 197 52.3
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 1.3e-55 220.3 197 50.3
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 1.3e-55 220.3 197 51.8
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 1.7e-55 219.9 197 52.3
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 1.7e-55 219.9 197 50.3
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 2.9e-55 219.2 197 51.8
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 2.9e-55 219.2 197 51.3
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 2.9e-55 219.2 197 51.8
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 2.9e-55 219.2 197 52.3
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 2.9e-55 219.2 197 52.3
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 3.8e-55 218.8 198 51.5
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 4.9e-55 218.4 197 52.3
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 4.9e-55 218.4 197 51.8
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.1e-54 217.2 203 50.7
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 1.1e-54 217.2 197 53.8
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 1.4e-54 216.9 197 52.8
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 1.4e-54 216.9 198 52.5
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 1.9e-54 216.5 197 50.8
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 2.4e-54 216.1 197 49.7
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 2.4e-54 216.1 197 49.7
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 3.2e-54 215.7 198 52.0
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 3.2e-54 215.7 197 51.3
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 4.2e-54 215.3 199 51.8
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 4.2e-54 215.3 197 50.8
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 4.2e-54 215.3 198 52.0
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 5.4e-54 214.9 197 49.7
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 9.3e-54 214.2 197 48.2
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 1.2e-53 213.8 197 51.8
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 1.2e-53 213.8 197 50.3
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.2e-53 213.8 198 52.0
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 1.6e-53 213.4 197 51.3
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 1.6e-53 213.4 197 48.2
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 2.7e-53 212.6 198 51.5
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 2.7e-53 212.6 207 49.8
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 4.6e-53 211.8 207 49.8
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 6.0e-53 211.5 197 50.3
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 6.0e-53 211.5 197 50.3
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 6.0e-53 211.5 198 51.0
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 6.0e-53 211.5 197 49.7
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 1.3e-52 210.3 197 51.8
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 2.3e-52 209.5 197 51.3
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 3.9e-52 208.8 197 48.7
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 3.9e-52 208.8 197 50.8
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 6.7e-52 208.0 197 48.7
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 6.7e-52 208.0 197 49.2
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 8.7e-52 207.6 195 49.7
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 1.1e-51 207.2 197 50.8
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 1.5e-51 206.8 197 50.8
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 1.5e-51 206.8 207 48.3
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 1.5e-51 206.8 197 49.2
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 2.5e-51 206.1 197 49.7
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 3.3e-51 205.7 199 49.2
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 3.3e-51 205.7 197 49.2
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 4.3e-51 205.3 197 49.7
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 7.4e-51 204.5 197 48.7
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 1.3e-50 203.8 197 48.7
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 2.8e-50 202.6 197 49.2
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 3.7e-50 202.2 197 48.2
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 1.1e-49 200.7 197 48.2
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 1.1e-49 200.7 197 48.2
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 1.8e-49 199.9 197 48.7
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 2.4e-49 199.5 197 47.7
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 4.5e-48 195.3 197 48.2
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 4.5e-48 195.3 197 48.2
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 1.3e-47 193.7 197 46.7
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 3.8e-47 192.2 197 47.2
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 4.9e-47 191.8 197 45.7
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 6.5e-47 191.4 197 47.2
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 9.3e-46 187.6 189 46.0
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 1.8e-44 183.3 197 45.7
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 2.3e-44 183.0 213 45.1
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 1.4e-41 173.7 197 44.2
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 3.0e-36 156.0 197 39.1
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 1.5e-35 153.7 126 55.6
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.5e-35 152.9 181 45.9
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 5.1e-28 128.6 171 45.0
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 4.3e-27 125.6 107 56.1
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 7.4e-27 124.8 200 35.5
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 2.2e-26 123.2 140 43.6
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.2e-26 123.2 107 55.1
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 3.7e-26 122.5 182 40.1
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-25 120.6 105 56.2
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 3.4e-24 115.9 195 36.9
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 3.4e-24 115.9 192 37.5
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 5.9e-24 115.2 192 35.9
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 1.6e-21 107.1 151 41.1
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 2.8e-18 96.3 91 49.5
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 1.1e-17 94.4 83 55.4
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 9.1e-17 91.3 77 54.5
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 1.2e-13 80.9 83 50.6
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 1.2e-13 80.9 83 50.6
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.0e-12 77.8 175 33.1
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.0e-12 77.8 189 33.3
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 5.7e-11 72.0 63 52.4
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 7.4e-11 71.6 62 53.2
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 9.7e-11 71.2 62 53.2
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 6.3e-10 68.6 62 51.6
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 3.1e-09 66.2 54 53.7
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 7.7e-08 61.6 64 48.4
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 6.5e-07 58.5 52 48.1


User provided reference genes

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