Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO241G0021 Selaginella moellendorffii HOM05D006193 ORTHO05D007808 3.4e-46 188.0 95 100.0
SMO232G0066 Selaginella moellendorffii HOM05D006193 ORTHO05D007808 3.0e-42 174.9 95 91.6
Os03g0288400 Oryza sativa ssp. japonica HOM05D006193 ORTHO05D007808 1.7e-16 89.4 91 42.9
Zm00001eb062340 Zea mays HOM05D006193 ORTHO05D007808 1.4e-15 86.3 91 41.8
ATR0329G030 Amborella trichopoda HOM05D006193 ORTHO05D007808 5.4e-15 84.3 90 43.3
TAR623G1160 Trochodendron aralioides HOM05D006193 ORTHO05D007808 5.4e-15 84.3 90 41.1
PGR044G2737 Punica granatum HOM05D006193 ORTHO05D007808 1.6e-14 82.8 90 41.1
TWI63G1140 Tripterygium wilfordii HOM05D006193 ORTHO05D007808 1.6e-14 82.8 90 41.1
Manes.10G047101 Manihot esculenta HOM05D006193 ORTHO05D007808 2.7e-14 82.0 90 38.9
MBI07_g44648_MAGBIO Magnolia biondii HOM05D006193 ORTHO05D007808 3.5e-14 81.6 90 42.2
ECA248G2014 Erigeron canadensis HOM05D006193 ORTHO05D007808 4.5e-14 81.3 90 40.0
HanXRQChr01g0023971 Helianthus annuus HOM05D006193 ORTHO05D007808 4.5e-14 81.3 90 40.0
Prupe.2G212200 Prunus persica HOM05D006193 ORTHO05D007808 4.5e-14 81.3 90 38.9
Potri.010G223700 Populus trichocarpa HOM05D006193 ORTHO05D007808 5.9e-14 80.9 90 41.1
Nn2g10831 Nelumbo nucifera HOM05D006193 ORTHO05D007808 7.7e-14 80.5 90 40.0
Glyma.10G210100 Glycine max HOM05D006193 ORTHO05D007808 1.0e-13 80.1 90 38.9
Nitab4.5_0000071g0090 Nicotiana tabacum HOM05D006193 ORTHO05D007808 1.0e-13 80.1 92 38.0
FvH4_7g19210 Fragaria vesca HOM05D006193 ORTHO05D007808 1.3e-13 79.7 90 37.8
HanXRQChr08g0229761 Helianthus annuus HOM05D006193 ORTHO05D007808 1.3e-13 79.7 90 38.9
Cfa001990 Carpinus fangiana HOM05D006193 ORTHO05D007808 1.7e-13 79.3 90 36.7
CDE03G0070 Ceratophyllum demersum HOM05D006193 ORTHO05D007808 1.7e-13 79.3 91 40.7
Glyma.20G180500 Glycine max HOM05D006193 ORTHO05D007808 1.7e-13 79.3 90 38.9
Gohir.D06G175300 Gossypium hirsutum HOM05D006193 ORTHO05D007808 1.7e-13 79.3 90 37.8
Gorai.010G205700 Gossypium raimondii HOM05D006193 ORTHO05D007808 1.7e-13 79.3 90 37.8
Hund05693 Selenicereus undatus HOM05D006193 ORTHO05D007808 1.7e-13 79.3 90 40.0
Cfa001656 Carpinus fangiana HOM05D006193 ORTHO05D007808 2.3e-13 79.0 90 36.7
Ciclev10033053m.g Citrus clementina HOM05D006193 ORTHO05D007808 2.3e-13 79.0 90 37.8
Lsat_1_v5_gn_1_77620 Lactuca sativa HOM05D006193 ORTHO05D007808 2.3e-13 79.0 90 37.8
Nitab4.5_0006507g0010 Nicotiana tabacum HOM05D006193 ORTHO05D007808 2.3e-13 79.0 92 37.0
CANSAT54G0886 Cannabis sativa HOM05D006193 ORTHO05D007808 2.9e-13 78.6 90 38.9
Peaxi162Scf00011g01839 Petunia axillaris HOM05D006193 ORTHO05D007808 2.9e-13 78.6 90 37.8
SalBow4G2149 Salvia bowleyana HOM05D006193 ORTHO05D007808 2.9e-13 78.6 90 40.0
TAR369G0988 Trochodendron aralioides HOM05D006193 ORTHO05D007808 2.9e-13 78.6 90 38.9
HPP92_011207 Vanilla planifolia HOM05D006193 ORTHO05D007808 2.9e-13 78.6 90 35.6
Duzib114G0385 Durio zibethinus HOM05D006193 ORTHO05D007808 3.8e-13 78.2 90 36.7
Peaxi162Scf00370g00117 Petunia axillaris HOM05D006193 ORTHO05D007808 3.8e-13 78.2 90 37.8
Sed0026413 Sechium edule HOM05D006193 ORTHO05D007808 3.8e-13 78.2 91 37.4
VMungo0720G0734 Vigna mungo HOM05D006193 ORTHO05D007808 3.8e-13 78.2 90 36.7
Aqoxy1G03645 Aquilegia oxysepala HOM05D006193 ORTHO05D007808 5.0e-13 77.8 90 41.1
MSTRG.27474 Avicennia marina HOM05D006193 ORTHO05D007808 5.0e-13 77.8 90 38.9
FAN03G1544 Fragaria x ananassa HOM05D006193 ORTHO05D007808 5.0e-13 77.8 91 36.3
MD01G1107500 Malus domestica HOM05D006193 ORTHO05D007808 5.0e-13 77.8 90 37.8
Phvul.007G095900 Phaseolus vulgaris HOM05D006193 ORTHO05D007808 5.0e-13 77.8 90 36.7
Solyc03g007490.3 Solanum lycopersicum HOM05D006193 ORTHO05D007808 5.0e-13 77.8 90 37.8
Sopen03g003450 Solanum pennellii HOM05D006193 ORTHO05D007808 5.0e-13 77.8 90 37.8
Haze_16878 Corylus avellana HOM05D006193 ORTHO05D007808 6.5e-13 77.4 90 35.6
FAN10G2131 Fragaria x ananassa HOM05D006509 ORTHO05D008144 6.5e-13 77.4 90 36.7
FAN10G3587 Fragaria x ananassa HOM05D006509 ORTHO05D007808 6.5e-13 77.4 90 36.7
Gohir.A06G167900 Gossypium hirsutum HOM05D006193 ORTHO05D007808 6.5e-13 77.4 90 36.7
PGSC0003DMG400009070 Solanum tuberosum HOM05D006193 ORTHO05D007808 6.5e-13 77.4 90 37.8
THA.LOC104808680 Tarenaya hassleriana HOM05D006193 ORTHO05D007808 6.5e-13 77.4 94 36.2
Lj5g0007819 Lotus japonicus HOM05D006193 ORTHO05D007808 8.6e-13 77.0 90 36.7
PSO832G3015 Papaver somniferum HOM05D006193 ORTHO05D007808 8.6e-13 77.0 90 40.0
PSO210G4078 Papaver somniferum HOM05D006193 ORTHO05D007808 1.1e-12 76.6 90 40.0
RcHm_v2.0_Chr1g0363061 Rosa chinensis HOM05D006193 ORTHO05D007808 1.1e-12 76.6 90 36.7
Actinidia38857 Actinidia chinensis HOM05D006193 ORTHO05D007808 1.5e-12 76.3 90 35.6
CAN.G108.21 Capsicum annuum HOM05D006193 ORTHO05D007808 1.5e-12 76.3 90 36.7
Mapoly0038s0090 Marchantia polymorpha HOM05D006193 ORTHO05D007808 1.5e-12 76.3 90 42.2
Eucgr.J01081 Eucalyptus grandis HOM05D006193 ORTHO05D007808 1.9e-12 75.9 88 38.6
CiPaw.02G173400 Carya illinoinensis HOM05D006193 ORTHO05D007808 2.5e-12 75.5 90 33.3
Thhalv10026557m.g Eutrema salsugineum HOM05D006193 ORTHO05D007808 2.5e-12 75.5 90 36.7
QL08p055470 Quercus lobata HOM05D006193 ORTHO05D007808 2.5e-12 75.5 90 37.8
AL7G42250 Arabidopsis lyrata HOM05D006193 ORTHO05D007808 3.2e-12 75.1 90 36.7
COL.COLO4_28414 Corchorus olitorius HOM05D006193 ORTHO05D007808 3.2e-12 75.1 90 35.6
DCAR_016552 Daucus carota HOM05D006193 ORTHO05D007808 3.2e-12 75.1 90 36.7
Carub.0007s2828 Capsella rubella HOM05D006193 ORTHO05D007808 4.2e-12 74.7 90 35.6
Thecc.10G076000 Theobroma cacao HOM05D006193 ORTHO05D007808 4.2e-12 74.7 90 35.6
Atru.chr12.797 Acer truncatum HOM05D006193 ORTHO05D007808 5.5e-12 74.3 90 34.4
Sp7g11980 Schrenkiella parvula HOM05D006193 ORTHO05D007808 5.5e-12 74.3 90 35.6
AT4G14145 Arabidopsis thaliana HOM05D006193 ORTHO05D007808 7.2e-12 73.9 90 35.6
BcaC07g37722 Brassica carinata HOM05D006193 ORTHO05D007808 7.2e-12 73.9 94 35.1
A08p24240 Brassica napus HOM05D006193 ORTHO05D007808 7.2e-12 73.9 93 34.4
Cc02_g11260 Coffea canephora HOM05D006193 ORTHO05D007808 7.2e-12 73.9 90 35.6
Aa31LG9G3240 Aethionema arabicum HOM05D006193 ORTHO05D007808 9.5e-12 73.6 90 36.7
Migut.F01979 Erythranthe guttata HOM05D006193 ORTHO05D007808 9.5e-12 73.6 90 36.7
Lalb_Chr01g0009491 Lupinus albus HOM05D006193 ORTHO05D007808 9.5e-12 73.6 90 34.4
Sed0026653 Sechium edule HOM05D006193 ORTHO05D007808 9.5e-12 73.6 91 33.0
BcaB04g18121 Brassica carinata HOM05D006193 ORTHO05D007808 1.2e-11 73.2 90 35.6
A08p10360 Brassica napus HOM05D006193 ORTHO05D007808 1.2e-11 73.2 90 35.6
BolC8t48104H Brassica oleracea HOM05D006193 ORTHO05D007808 1.2e-11 73.2 90 35.6
BraA08t33036Z Brassica rapa HOM05D006193 ORTHO05D007808 1.2e-11 73.2 90 35.6
Duzib128G0799 Durio zibethinus HOM05D006193 ORTHO05D007808 1.2e-11 73.2 104 34.6
SGA_v2.0_scaffold355G49780 Striga asiatica HOM05D006193 ORTHO05D007808 1.2e-11 73.2 90 34.4
unitig_37.g12308 Utricularia gibba HOM05D006193 ORTHO05D007808 1.2e-11 73.2 89 36.0
CSS0007064 Camellia sinensis var. sinensis HOM05D006193 ORTHO05D007808 1.6e-11 72.8 90 35.6
TPR.G1973 Trifolium pratense HOM05D006193 ORTHO05D007808 2.1e-11 72.4 90 33.3
Migut.D01650 Erythranthe guttata HOM05D006193 ORTHO05D007808 2.8e-11 72.0 90 35.6
Aqoxy1G03181 Aquilegia oxysepala HOM05D006193 ORTHO05D007808 3.6e-11 71.6 90 38.9
CARHR220160 Cardamine hirsuta HOM05D006193 ORTHO05D007808 6.1e-11 70.9 90 34.4
GSVIVG01016260001 Vitis vinifera HOM05D006193 ORTHO05D007808 6.1e-11 70.9 90 35.6
arahy.Tifrunner.gnm1.ann1.4G5N71 Arachis hypogaea HOM05D006193 ORTHO05D007808 1.4e-10 69.7 90 33.3
BraA08t34379Z Brassica rapa HOM05D006193 ORTHO05D007808 1.4e-10 69.7 87 33.3
arahy.Tifrunner.gnm1.ann1.889ECD Arachis hypogaea HOM05D006193 ORTHO05D007808 1.8e-10 69.3 90 33.3
SGA_v2.0_scaffold250G44987 Striga asiatica HOM05D006193 ORTHO05D007808 1.8e-10 69.3 90 34.4
BcaC01g00219 Brassica carinata HOM05D006193 ORTHO05D007808 4.0e-10 68.2 90 33.3
Ca_10561_v3 Cicer arietinum L. HOM05D006193 ORTHO05D007808 4.0e-10 68.2 83 36.1
AagrBONN_evm.TU.Sc2ySwM_228.264 Anthoceros agrestis HOM05D006193 ORTHO05D007808 8.8e-10 67.0 88 35.2
MELO3C012421.2 Cucumis melo HOM05D006193 ORTHO05D007808 2.0e-09 65.9 123 28.5
MBI07_g30981_MAGBIO Magnolia biondii HOM05D006193 ORTHO05D007808 2.6e-09 65.5 63 44.4
Oeu042739.1 Olea europaea HOM05D006193 ORTHO05D007808 5.7e-09 64.3 101 31.7
CiPaw.16G031600 Carya illinoinensis HOM05D006193 ORTHO05D007808 1.3e-08 63.2 81 34.6
ClCG05G021080 Citrullus lanatus HOM05D006193 ORTHO05D007808 1.3e-08 63.2 120 27.5
vmacro07063 Vaccinium macrocarpon HOM05D006193 ORTHO05D007808 1.3e-08 63.2 63 39.7
Sc20g0001780 Simmondsia chinensis HOM05D006193 ORTHO05D007808 1.7e-08 62.8 119 29.4
SGA_v2.0_scaffold24G10658 Striga asiatica HOM05D006193 ORTHO05D007808 1.7e-08 62.8 87 31.0
Oeu014384.2 Olea europaea HOM05D006193 ORTHO05D007808 2.2e-08 62.4 119 27.7
Pp3c5_20880 Physcomitrium patens HOM05D006193 ORTHO05D007808 2.2e-08 62.4 98 33.7
Sabra10G0173000 Salix brachista HOM05D006193 ORTHO05D007808 2.2e-08 62.4 129 27.9
Rhsim03G0119300 Rhododendron simsii HOM05D006193 ORTHO05D007808 3.7e-08 61.6 63 39.7
FAN19G2294 Fragaria x ananassa HOM05D006193 ORTHO05D007808 6.3e-08 60.8 83 36.1
CsaV3_5G036210 Cucumis sativus L. HOM05D006193 ORTHO05D007808 1.8e-07 59.3 64 35.9
FAN06G3393 Fragaria x ananassa HOM05D006193 ORTHO05D007808 1.8e-07 59.3 58 39.7
Medtr1g094840 Medicago truncatula HOM05D006193 ORTHO05D007808 4.1e-07 58.2 63 34.9


User provided reference genes

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