Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO239G0207 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 4.2e-266 921.0 536 100.0
SMO232G0062 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 3.1e-245 851.7 609 85.9
AagrBONN_evm.TU.Sc2ySwM_117.2822 Anthoceros agrestis HOM05D004723 ORTHO05D006176 2.4e-104 383.6 626 47.9
SEGI_08029 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 9.5e-101 371.7 452 50.0
Manes.10G142700 Manihot esculenta HOM05D004723 ORTHO05D006176 6.4e-97 359.0 606 42.2
Eucgr.I02314 Eucalyptus grandis HOM05D004723 ORTHO05D006176 8.3e-97 358.6 581 40.6
GSVIVG01007226001 Vitis vinifera HOM05D004723 ORTHO05D006176 1.0e-94 351.7 601 41.1
Sed0008382 Sechium edule HOM05D004723 ORTHO05D006176 1.1e-93 348.2 600 41.7
CiPaw.07G062200 Carya illinoinensis HOM05D004723 ORTHO05D006176 2.5e-93 347.1 614 44.3
Nn5g30820 Nelumbo nucifera HOM05D004723 ORTHO05D006176 4.7e-92 342.8 586 42.0
AagrBONN_evm.TU.Sc2ySwM_368.2747 Anthoceros agrestis HOM05D004723 ORTHO05D006176 1.4e-91 341.3 625 45.6
Atru.chr3.886 Acer truncatum HOM05D004723 ORTHO05D006176 4.0e-91 339.7 611 42.6
Atru.chr3.897 Acer truncatum HOM05D004723 ORTHO05D006176 4.0e-91 339.7 611 42.6
Cc07_g11220 Coffea canephora HOM05D004723 ORTHO05D006176 5.2e-91 339.3 617 40.8
Potri.005G108800 Populus trichocarpa HOM05D004723 ORTHO05D006176 5.2e-91 339.3 620 41.3
Haze_03712 Corylus avellana HOM05D004723 ORTHO05D006176 2.0e-90 337.4 619 39.4
TWI09G0244 Tripterygium wilfordii HOM05D004723 ORTHO05D006176 2.6e-90 337.0 610 40.2
Ciclev10025027m.g Citrus clementina HOM05D004723 ORTHO05D006176 2.2e-89 334.0 594 41.9
Sc07g0001170 Simmondsia chinensis HOM05D004723 ORTHO05D006176 6.4e-89 332.4 608 41.4
VMungo0251G3240 Vigna mungo HOM05D004723 ORTHO05D006176 8.3e-89 332.0 593 40.8
Gorai.012G044400 Gossypium raimondii HOM05D004723 ORTHO05D006176 1.9e-88 330.9 619 39.1
ECA232G2222 Erigeron canadensis HOM05D004723 ORTHO05D006176 2.4e-88 330.5 594 38.7
Gohir.A05G376600 Gossypium hirsutum HOM05D004723 ORTHO05D006176 5.4e-88 329.3 617 41.2
ClCG05G000690 Citrullus lanatus HOM05D004723 ORTHO05D006176 7.0e-88 328.9 593 39.8
Lj4A224T28 Lonicera japonica HOM05D004723 ORTHO05D006176 7.0e-88 328.9 618 43.2
CSS0036730 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 6.0e-87 325.9 433 47.6
Sabra05G0089200 Salix brachista HOM05D004723 ORTHO05D006176 1.3e-86 324.7 625 39.7
MSTRG.10980 Avicennia marina HOM05D004723 ORTHO05D006176 2.3e-86 323.9 597 40.9
Nitab4.5_0006899g0060 Nicotiana tabacum HOM05D004723 ORTHO05D006176 2.3e-86 323.9 631 36.1
Pp3c17_7210 Physcomitrium patens HOM05D004723 ORTHO05D006176 6.6e-86 322.4 471 43.3
PGR119G2074 Punica granatum HOM05D004723 ORTHO05D006176 6.6e-86 322.4 631 41.2
MELO3C006009.2 Cucumis melo HOM05D004723 ORTHO05D006176 8.6e-86 322.0 596 39.8
Cfa007019 Carpinus fangiana HOM05D004723 ORTHO05D006176 4.3e-85 319.7 613 37.8
Hund14070 Selenicereus undatus HOM05D004723 ORTHO05D006176 4.3e-85 319.7 598 43.3
CSS0012813 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 5.6e-85 319.3 442 45.7
Phvul.003G266400 Phaseolus vulgaris HOM05D004723 ORTHO05D006176 5.6e-85 319.3 597 41.5
Glyma.16G122800 Glycine max HOM05D004723 ORTHO05D006176 9.5e-85 318.5 603 42.8
Nitab4.5_0001789g0050 Nicotiana tabacum HOM05D004723 ORTHO05D006176 9.5e-85 318.5 631 37.4
Glyma.02G045200 Glycine max HOM05D004723 ORTHO05D006176 2.8e-84 317.0 586 43.3
PGSC0003DMG400003588 Solanum tuberosum HOM05D004723 ORTHO05D006176 2.8e-84 317.0 641 37.8
arahy.Tifrunner.gnm1.ann1.DG5MW5 Arachis hypogaea HOM05D004723 ORTHO05D006176 4.7e-84 316.2 562 40.7
CsaV3_3G007910 Cucumis sativus L. HOM05D004723 ORTHO05D006176 6.2e-84 315.8 437 44.6
Sp3g00960 Schrenkiella parvula HOM05D004723 ORTHO05D006176 1.4e-83 314.7 636 38.5
QL06p051414 Quercus lobata HOM05D004723 ORTHO05D006176 3.1e-83 313.5 633 40.8
Solyc02g083470.3 Solanum lycopersicum HOM05D004723 ORTHO05D006176 4.0e-83 313.2 643 36.9
Duzib147G1420 Durio zibethinus HOM05D004723 ORTHO05D006176 5.2e-83 312.8 580 39.3
Actinidia35669 Actinidia chinensis HOM05D004723 ORTHO05D006176 8.9e-83 312.0 438 44.3
Peaxi162Scf00198g00136 Petunia axillaris HOM05D004723 ORTHO05D006176 1.2e-82 311.6 610 40.8
ATR0665G361 Amborella trichopoda HOM05D004723 ORTHO05D006176 9.9e-82 308.5 450 43.6
arahy.Tifrunner.gnm1.ann1.7VD04T Arachis hypogaea HOM05D004723 ORTHO05D006176 1.3e-81 308.1 568 39.6
MD02G1124600 Malus domestica HOM05D004723 ORTHO05D006176 1.7e-81 307.8 615 38.9
AT3G01160 Arabidopsis thaliana HOM05D004723 ORTHO05D006176 3.7e-81 306.6 632 39.7
Sopen02g028260 Solanum pennellii HOM05D004723 ORTHO05D006176 1.1e-80 305.1 649 37.0
Prupe.7G173800 Prunus persica HOM05D004723 ORTHO05D006176 1.4e-80 304.7 614 39.3
Thecc.08G139800 Theobroma cacao HOM05D004723 ORTHO05D006176 1.9e-80 304.3 587 39.0
CANSAT25G3056 Cannabis sativa HOM05D004723 ORTHO05D006176 2.4e-80 303.9 610 40.3
AL3G11100 Arabidopsis lyrata HOM05D004723 ORTHO05D006176 3.2e-80 303.5 640 38.9
TAR628G1348 Trochodendron aralioides HOM05D004723 ORTHO05D006176 3.2e-80 303.5 595 45.0
Lj4g0028127 Lotus japonicus HOM05D004723 ORTHO05D006176 5.4e-80 302.8 591 39.9
HanXRQChr09g0257321 Helianthus annuus HOM05D004723 ORTHO05D006176 7.1e-80 302.4 613 36.4
Lalb_Chr16g0391491 Lupinus albus HOM05D004723 ORTHO05D006176 9.2e-80 302.0 619 38.3
Migut.F01827 Erythranthe guttata HOM05D004723 ORTHO05D006176 1.6e-79 301.2 434 45.4
PSO541G1155 Papaver somniferum HOM05D004723 ORTHO05D006176 4.6e-79 299.7 609 36.9
PSO675G8954 Papaver somniferum HOM05D004723 ORTHO05D006176 6.0e-79 299.3 604 38.6
CAN.G890.41 Capsicum annuum HOM05D004723 ORTHO05D006176 1.7e-78 297.7 440 43.2
Aqoxy6G02087 Aquilegia oxysepala HOM05D004723 ORTHO05D006176 2.3e-78 297.4 440 43.9
EL10Ac6g15170 Beta vulgaris HOM05D004723 ORTHO05D006176 2.3e-78 297.4 635 38.7
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 2.3e-78 297.4 618 40.1
Psat7g090000 Pisum sativum HOM05D004723 ORTHO05D006176 1.1e-77 295.0 603 37.6
Cpa.g.sc6.304 Carica papaya HOM05D004723 ORTHO05D006176 1.6e-76 291.2 454 41.6
Thhalv10020182m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 1.6e-76 291.2 617 39.7
Lsat_1_v5_gn_4_144101 Lactuca sativa HOM05D004723 ORTHO05D006176 1.4e-75 288.1 637 40.2
vmacro18436 Vaccinium macrocarpon HOM05D004723 ORTHO05D006176 1.4e-75 288.1 600 40.5
FAN19G1371 Fragaria x ananassa HOM05D004723 ORTHO05D006176 1.8e-75 287.7 618 38.2
Rhsim08G0030800 Rhododendron simsii HOM05D004723 ORTHO05D006176 4.0e-75 286.6 607 37.1
BcaC05g30387 Brassica carinata HOM05D004723 ORTHO05D006176 6.8e-75 285.8 634 40.1
FvH4_1g11200 Fragaria vesca HOM05D004723 ORTHO05D006176 8.9e-75 285.4 618 38.2
Medtr4g096820 Medicago truncatula HOM05D004723 ORTHO05D006176 1.2e-74 285.0 639 36.9
C09p75390 Brassica napus HOM05D004723 ORTHO05D006176 1.5e-74 284.6 635 39.8
DCAR_024713 Daucus carota HOM05D004723 ORTHO05D006176 1.5e-74 284.6 650 38.5
BraA05t23177Z Brassica rapa HOM05D004723 ORTHO05D006176 4.4e-74 283.1 651 34.6
A05p44800 Brassica napus HOM05D004723 ORTHO05D006176 7.6e-74 282.3 640 35.3
Ca_18264_v3 Cicer arietinum L. HOM05D004723 ORTHO05D006176 9.9e-74 282.0 588 38.3
Mapoly0061s0018 Marchantia polymorpha HOM05D004723 ORTHO05D006176 1.7e-73 281.2 503 40.8
FAN23G0842 Fragaria x ananassa HOM05D004723 ORTHO05D006176 3.8e-73 280.0 442 44.1
FAN26G3228 Fragaria x ananassa HOM05D004723 ORTHO05D006176 1.1e-72 278.5 619 36.8
BolC5t35121H Brassica oleracea HOM05D004723 ORTHO05D006176 3.2e-72 276.9 642 38.9
Medtr4g073330 Medicago truncatula HOM05D004723 ORTHO05D006176 5.4e-72 276.2 557 38.4
RcHm_v2.0_Chr2g0098611 Rosa chinensis HOM05D004723 ORTHO05D006176 4.6e-71 273.1 633 35.1
CARHR075890 Cardamine hirsuta HOM05D004723 ORTHO05D006176 1.7e-70 271.2 615 41.5
Aa31LG5G12460 Aethionema arabicum HOM05D004723 ORTHO05D006176 5.1e-70 269.6 648 40.4
BcaC05g30489 Brassica carinata HOM05D004723 ORTHO05D006176 6.6e-70 269.2 438 40.2
AUR62003701 Chenopodium quinoa HOM05D004723 ORTHO05D006176 8.7e-70 268.9 626 36.3
SGA_v2.0_scaffold111G31425 Striga asiatica HOM05D004723 ORTHO05D006176 7.3e-69 265.8 495 36.8
SHI00027 Sapria himalayana HOM05D004723 ORTHO05D006176 1.2e-68 265.0 594 34.8
Dinv40130 Davidia involucrata HOM05D004723 ORTHO05D006176 2.8e-68 263.8 299 48.8
Gohir.1Z049326 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.1e-67 261.9 583 35.8
AUR62018009 Chenopodium quinoa HOM05D004723 ORTHO05D006176 1.4e-67 261.5 438 39.3
Carub.0003s0100 Capsella rubella HOM05D004723 ORTHO05D006176 1.8e-67 261.2 651 38.2
Zm00001eb323180 Zea mays HOM05D004723 ORTHO05D006176 3.1e-67 260.4 473 40.6
Os07g0531700 Oryza sativa ssp. japonica HOM05D004723 ORTHO05D006176 4.0e-67 260.0 464 40.7
Ah.01g003790 Amaranthus hybridus HOM05D004723 ORTHO05D006176 7.6e-66 255.8 457 38.7
BcaC01g04506 Brassica carinata HOM05D004723 ORTHO05D006176 1.0e-62 245.4 411 43.1
CDE05G0976 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 1.1e-61 241.9 356 48.3
TPR.G4863 Trifolium pratense HOM05D004723 ORTHO05D006176 1.1e-61 241.9 440 38.4
Oeu005338.2 Olea europaea HOM05D004723 ORTHO05D006176 4.5e-58 229.9 629 35.5
CBR_g41392 Chara braunii HOM05D004723 ORTHO05D006176 6.4e-49 199.5 235 47.7
HPP92_019125 Vanilla planifolia HOM05D004723 ORTHO05D006176 1.0e-46 192.2 190 53.7
Gohir.1Z049627 Gossypium hirsutum HOM05D004723 ORTHO05D006176 2.3e-46 191.0 344 38.1
PRCOL_00004947 Prasinoderma coloniale HOM05D004723 ORTHO05D006176 8.2e-44 182.6 475 34.9
MD15G1238700 Malus domestica HOM05D004723 ORTHO05D006176 1.8e-43 181.4 318 39.3
Rhsim08G0030900 Rhododendron simsii HOM05D004723 ORTHO05D006176 3.8e-41 173.7 341 42.2
Cre10.g452500 Chlamydomonas reinhardtii HOM05D004723 ORTHO05D006176 4.6e-39 166.8 404 30.9
C03p39900 Brassica napus HOM05D004723 ORTHO05D006176 1.5e-37 161.8 195 45.6
TPR.G3121 Trifolium pratense HOM05D004723 ORTHO05D006176 4.8e-36 156.8 191 45.5
MCO13G085 Micromonas commoda HOM05D004723 ORTHO05D006176 1.8e-35 154.8 628 28.5
Gohir.D04G039432 Gossypium hirsutum HOM05D004723 ORTHO05D006176 3.8e-33 147.1 243 39.5
TAR628G1016 Trochodendron aralioides HOM05D004723 ORTHO05D005421 6.5e-33 146.4 206 42.7
Thecc.01G155000 Theobroma cacao HOM05D004723 ORTHO05D006176 5.3e-27 126.7 295 34.9
BolC3t16253H Brassica oleracea HOM05D004723 ORTHO05D006176 2.2e-20 104.8 112 48.2
AagrBONN_evm.TU.Sc2ySwM_117.2819 Anthoceros agrestis HOM05D004723 ORTHO05D006176 3.1e-19 100.9 284 37.7
TPR.G330 Trifolium pratense HOM05D004723 ORTHO05D006176 2.5e-16 91.3 76 57.9
COL.COLO4_34179 Corchorus olitorius HOM05D004723 ORTHO05D006176 9.4e-16 89.4 386 27.2
COL.COLO4_33606 Corchorus olitorius HOM05D004723 ORTHO05D006176 2.7e-15 87.8 175 48.0
MD15G1238600 Malus domestica HOM05D004723 ORTHO05D006176 4.7e-15 87.0 187 36.4
TPR.G36124 Trifolium pratense HOM05D004723 ORTHO05D006176 8.0e-15 86.3 76 53.9
Medtr3g107330 Medicago truncatula HOM05D004723 ORTHO05D006176 1.8e-14 85.1 97 43.3
Thhalv10017085m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 2.0e-13 81.6 167 38.9
GSVIVG01005594001 Vitis vinifera HOM05D004723 ORTHO05D006176 5.3e-11 73.6 76 48.7
CDE05G0343 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 2.6e-10 71.2 192 32.8
SEGI_25425 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 3.5e-10 70.9 59 50.8
GSVIVG01005388001 Vitis vinifera HOM05D004723 ORTHO05D006176 3.5e-10 70.9 71 49.3
HPP92_019124 Vanilla planifolia HOM05D004723 ORTHO05D006176 2.2e-09 68.2 216 35.2
TAR628G0893 Trochodendron aralioides HOM05D004723 ORTHO05D006176 3.2e-08 64.3 75 49.3
TPR.G29970 Trifolium pratense HOM05D004723 ORTHO05D006176 4.2e-08 63.9 74 45.9
Medtr3g107350 Medicago truncatula HOM05D004723 ORTHO05D006176 7.2e-08 63.2 171 36.3
Dinv40131 Davidia involucrata HOM05D004723 ORTHO05D006176 4.7e-07 60.5 58 53.4
Oeu046870.1 Olea europaea HOM05D004723 ORTHO05D006176 1.0e-06 59.3 69 47.8
THA.LOC104821168 Tarenaya hassleriana HOM05D004723 ORTHO05D006176 5.2e-06 57.0 58 51.7


User provided reference genes

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