Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO239G0178 Selaginella moellendorffii HOM05D002962 ORTHO05D003280 1.2e-156 556.6 297 100.0
Mapoly0002s0022 Marchantia polymorpha HOM05D002962 ORTHO05D003280 2.8e-17 93.6 280 30.7
SEGI_32683 Sequoiadendron giganteum HOM05D002962 ORTHO05D003280 4.7e-17 92.8 208 35.6
Os02g0704600 Oryza sativa ssp. japonica HOM05D002962 ORTHO05D003280 1.4e-16 91.3 243 34.2
Carub.0005s1730 Capsella rubella HOM05D002962 ORTHO05D003280 5.2e-16 89.4 174 39.1
Thhalv10010373m.g Eutrema salsugineum HOM05D002962 ORTHO05D003280 1.5e-15 87.8 231 36.8
Gohir.D10G092100 Gossypium hirsutum HOM05D002962 ORTHO05D003280 1.5e-15 87.8 257 33.9
Zm00001eb295390 Zea mays HOM05D002962 ORTHO05D003280 2.6e-15 87.0 248 32.7
C08p26120 Brassica napus HOM05D002962 ORTHO05D003280 3.4e-15 86.7 230 35.2
Gorai.008G066700 Gossypium raimondii HOM05D002962 ORTHO05D003280 3.4e-15 86.7 251 32.7
A09p44020 Brassica napus HOM05D002962 ORTHO05D003280 4.4e-15 86.3 230 35.2
BolC8t50230H Brassica oleracea HOM05D002962 ORTHO05D003280 4.4e-15 86.3 230 35.7
BraA09t39860Z Brassica rapa HOM05D002962 ORTHO05D003280 4.4e-15 86.3 230 35.2
Pp3c7_11200 Physcomitrium patens HOM05D002962 ORTHO05D003280 4.4e-15 86.3 220 32.7
BcaC07g39559 Brassica carinata HOM05D002962 ORTHO05D003280 7.5e-15 85.5 230 35.2
Gohir.A10G096000 Gossypium hirsutum HOM05D002962 ORTHO05D003280 7.5e-15 85.5 242 34.7
Gohir.A12G063600 Gossypium hirsutum HOM05D002962 ORTHO05D003280 7.5e-15 85.5 242 32.2
Gorai.011G101100 Gossypium raimondii HOM05D002962 ORTHO05D003280 7.5e-15 85.5 257 33.1
Lj9C586T8 Lonicera japonica HOM05D002962 ORTHO05D003280 7.5e-15 85.5 179 34.1
Psat4g094840 Pisum sativum HOM05D002962 ORTHO05D003280 7.5e-15 85.5 256 32.4
BcaB01g00566 Brassica carinata HOM05D002962 ORTHO05D003280 9.8e-15 85.1 235 35.7
QL06p047095 Quercus lobata HOM05D002962 ORTHO05D003280 9.8e-15 85.1 241 33.2
Aa31LG4G19010 Aethionema arabicum HOM05D002962 ORTHO05D003280 1.3e-14 84.7 242 34.7
AT3G50910 Arabidopsis thaliana HOM05D002962 ORTHO05D003280 1.3e-14 84.7 231 35.5
Manes.02G096200 Manihot esculenta HOM05D002962 ORTHO05D003280 1.3e-14 84.7 239 35.6
AL5G31270 Arabidopsis lyrata HOM05D002962 ORTHO05D003280 1.7e-14 84.3 231 35.1
BcaC06g33069 Brassica carinata HOM05D002962 ORTHO05D003280 1.7e-14 84.3 174 39.7
BcaC06g33332 Brassica carinata HOM05D002962 ORTHO05D003280 1.7e-14 84.3 174 39.7
C07p46030 Brassica napus HOM05D002962 ORTHO05D003280 1.7e-14 84.3 174 39.7
BolC7t45121H Brassica oleracea HOM05D002962 ORTHO05D003280 1.7e-14 84.3 174 39.7
CARHR160480 Cardamine hirsuta HOM05D002962 ORTHO05D003280 1.7e-14 84.3 229 34.1
TAR376G0270 Trochodendron aralioides HOM05D002962 ORTHO05D003280 2.2e-14 84.0 161 40.4
Gohir.D03G013000 Gossypium hirsutum HOM05D002962 ORTHO05D003280 2.9e-14 83.6 241 34.4
MBI18_g28939_MAGBIO Magnolia biondii HOM05D002962 ORTHO05D003280 2.9e-14 83.6 204 35.3
Cpa.g.sc6.150 Carica papaya HOM05D002962 ORTHO05D003280 3.7e-14 83.2 241 33.6
Duzib187G1402 Durio zibethinus HOM05D002962 ORTHO05D003280 3.7e-14 83.2 174 35.6
Sed0024753 Sechium edule HOM05D002962 ORTHO05D003280 3.7e-14 83.2 171 38.0
CARHR281270 Cardamine hirsuta HOM05D002962 ORTHO05D003280 4.9e-14 82.8 222 38.3
Thhalv10004394m.g Eutrema salsugineum HOM05D002962 ORTHO05D003280 6.4e-14 82.4 231 35.9
Medtr8g077135 Medicago truncatula HOM05D002962 ORTHO05D003280 6.4e-14 82.4 222 32.4
Peaxi162Scf00366g00712 Petunia axillaris HOM05D002962 ORTHO05D003280 6.4e-14 82.4 256 31.2
Glyma.16G135000 Glycine max HOM05D002962 ORTHO05D003280 1.1e-13 81.6 210 36.7
Nitab4.5_0001617g0050 Nicotiana tabacum HOM05D002962 ORTHO05D003280 1.9e-13 80.9 178 36.0
Sabra05G0099400 Salix brachista HOM05D002962 ORTHO05D003280 2.4e-13 80.5 241 34.0
THA.LOC104819203 Tarenaya hassleriana HOM05D002962 ORTHO05D003280 2.4e-13 80.5 238 34.0
BraA03t13910Z Brassica rapa HOM05D002962 ORTHO05D003280 3.2e-13 80.1 231 35.9
Manes.01G137800 Manihot esculenta HOM05D002962 ORTHO05D003280 3.2e-13 80.1 259 35.9
AT5G66480 Arabidopsis thaliana HOM05D002962 ORTHO05D003280 4.1e-13 79.7 161 40.4
Lj2g0023270 Lotus japonicus HOM05D002962 ORTHO05D003280 4.1e-13 79.7 177 35.0
Oeu027437.1 Olea europaea HOM05D002962 ORTHO05D003280 5.4e-13 79.3 261 30.7
Sabra07G0019200 Salix brachista HOM05D002962 ORTHO05D003280 5.4e-13 79.3 239 33.9
ECA238G1910 Erigeron canadensis HOM05D002962 ORTHO05D003280 7.0e-13 79.0 177 38.4
Potri.005G120600 Populus trichocarpa HOM05D002962 ORTHO05D003280 7.0e-13 79.0 241 35.3
Sed0002223 Sechium edule HOM05D002962 ORTHO05D003280 7.0e-13 79.0 175 34.9
GSVIVG01018925001 Vitis vinifera HOM05D002962 ORTHO05D003280 7.0e-13 79.0 230 32.6
Lalb_Chr09g0322191 Lupinus albus HOM05D002962 ORTHO05D003280 9.2e-13 78.6 222 32.4
Nn4g25254 Nelumbo nucifera HOM05D002962 ORTHO05D003280 9.2e-13 78.6 206 33.5
A03p48020 Brassica napus HOM05D002962 ORTHO05D003280 1.2e-12 78.2 231 35.9
Duzib147G1401 Durio zibethinus HOM05D002962 ORTHO05D003280 1.2e-12 78.2 174 34.5
PGR119G1115 Punica granatum HOM05D002962 ORTHO05D003280 1.2e-12 78.2 248 33.9
Zm00001eb188320 Zea mays HOM05D002962 ORTHO05D003280 1.2e-12 78.2 176 32.4
Cc07_g09830 Coffea canephora HOM05D002962 ORTHO05D003280 1.6e-12 77.8 255 32.5
Potri.007G022100 Populus trichocarpa HOM05D002962 ORTHO05D003280 1.6e-12 77.8 254 31.5
TWI73G0991 Tripterygium wilfordii HOM05D002962 ORTHO05D003280 1.6e-12 77.8 276 33.3
PSO170G2280 Papaver somniferum HOM05D002962 ORTHO05D003280 2.0e-12 77.4 161 37.3
Lj4g0019305 Lotus japonicus HOM05D002962 ORTHO05D003280 2.7e-12 77.0 233 33.5
Oeu012899.1 Olea europaea HOM05D002962 ORTHO05D003280 3.5e-12 76.6 247 30.4
HPP92_019941 Vanilla planifolia HOM05D002962 ORTHO05D003280 3.5e-12 76.6 234 34.6
Cpa.g.sc36.5 Carica papaya HOM05D002962 ORTHO05D003280 4.6e-12 76.3 183 35.0
COL.COLO4_22042 Corchorus olitorius HOM05D002962 ORTHO05D003280 4.6e-12 76.3 237 31.6
CsaV3_6G046440 Cucumis sativus L. HOM05D002962 ORTHO05D003280 4.6e-12 76.3 230 34.3
Gohir.D12G063400 Gossypium hirsutum HOM05D002962 ORTHO05D003280 4.6e-12 76.3 231 31.6
PSO170G1953 Papaver somniferum HOM05D002962 ORTHO05D003280 4.6e-12 76.3 161 37.3
PSO761G0551 Papaver somniferum HOM05D002962 ORTHO05D003280 4.6e-12 76.3 161 37.3
CAN.G358.53 Capsicum annuum HOM05D002962 ORTHO05D003280 6.0e-12 75.9 222 34.7
AUR62004084 Chenopodium quinoa HOM05D002962 ORTHO05D003280 6.0e-12 75.9 233 34.3
ClCG01G019720 Citrullus lanatus HOM05D002962 ORTHO05D003280 6.0e-12 75.9 239 33.9
Dinv40010 Davidia involucrata HOM05D002962 ORTHO05D003280 6.0e-12 75.9 109 45.9
SGA_v2.0_scaffold12G06303 Striga asiatica HOM05D002962 ORTHO05D003280 6.0e-12 75.9 161 36.0
Thecc.01G031700 Theobroma cacao HOM05D002962 ORTHO05D003280 6.0e-12 75.9 174 33.3
CSS0034307 Camellia sinensis var. sinensis HOM05D002962 ORTHO05D003280 7.8e-12 75.5 180 35.6
Carub.0008s2804 Capsella rubella HOM05D002962 ORTHO05D003280 7.8e-12 75.5 163 39.9
Gohir.A02G167000 Gossypium hirsutum HOM05D002962 ORTHO05D003280 7.8e-12 75.5 256 31.2
Nitab4.5_0000178g0300 Nicotiana tabacum HOM05D002962 ORTHO05D003280 7.8e-12 75.5 178 36.5
PSO541G2482 Papaver somniferum HOM05D002962 ORTHO05D003280 7.8e-12 75.5 177 36.7
CiPaw.02G020000 Carya illinoinensis HOM05D002962 ORTHO05D003280 1.0e-11 75.1 161 35.4
SEGI_16499 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 1.0e-11 75.1 164 34.8
PSO764G0045 Papaver somniferum HOM05D002962 ORTHO05D003280 1.3e-11 74.7 161 37.3
BcaC06g33066 Brassica carinata HOM05D002962 ORTHO05D003280 1.7e-11 74.3 176 37.5
Haze_15064 Corylus avellana HOM05D002962 ORTHO05D003280 1.7e-11 74.3 161 36.0
Ah.02g125020 Amaranthus hybridus HOM05D002962 ORTHO05D003280 2.3e-11 73.9 236 32.6
AUR62007595 Chenopodium quinoa HOM05D002962 ORTHO05D003280 2.3e-11 73.9 234 33.8
Lalb_Chr09g0333421 Lupinus albus HOM05D002962 ORTHO05D003280 2.3e-11 73.9 274 31.0
TWI09G0980 Tripterygium wilfordii HOM05D002962 ORTHO05D003280 2.3e-11 73.9 274 31.4
AL8G45050 Arabidopsis lyrata HOM05D002962 ORTHO05D003280 3.0e-11 73.6 185 37.8
Cc02_g36860 Coffea canephora HOM05D002962 ORTHO05D003280 3.0e-11 73.6 166 34.9
PSO122G0001 Papaver somniferum HOM05D002962 ORTHO05D003280 3.0e-11 73.6 146 37.7
PSO357G0658 Papaver somniferum HOM05D002962 ORTHO05D003280 3.0e-11 73.6 211 33.6
BcaC06g33335 Brassica carinata HOM05D002962 ORTHO05D003280 5.0e-11 72.8 176 36.9
Hma1.2p1_0224F.1_g094470 Hydrangea macrophylla HOM05D002962 ORTHO05D003280 5.0e-11 72.8 177 34.5
MD02G1143900 Malus domestica HOM05D002962 ORTHO05D003280 5.0e-11 72.8 163 35.6
Nn4g25253 Nelumbo nucifera HOM05D002962 ORTHO05D003280 5.0e-11 72.8 206 33.5
Atru.chr3.625 Acer truncatum HOM05D002962 ORTHO05D003280 6.6e-11 72.4 196 36.7
Duzib264G0441 Durio zibethinus HOM05D002962 ORTHO05D003280 6.6e-11 72.4 221 31.7
Ah.03g141110 Amaranthus hybridus HOM05D002962 ORTHO05D003280 8.6e-11 72.0 219 34.2
Gorai.003G013300 Gossypium raimondii HOM05D002962 ORTHO05D003280 1.5e-10 71.2 241 32.8
Hund16634 Selenicereus undatus HOM05D002962 ORTHO05D003280 1.9e-10 70.9 248 30.2
Sopen01g044940 Solanum pennellii HOM05D002962 ORTHO05D003280 1.9e-10 70.9 181 32.0
PGR102G1557 Punica granatum HOM05D002962 ORTHO05D003280 2.5e-10 70.5 235 33.2
Sc16g0002600 Simmondsia chinensis HOM05D002962 ORTHO05D003280 2.5e-10 70.5 216 33.8
THA.LOC104821299 Tarenaya hassleriana HOM05D002962 ORTHO05D003280 2.5e-10 70.5 211 32.7
arahy.Tifrunner.gnm1.ann1.IG7GIS Arachis hypogaea HOM05D002962 ORTHO05D003280 3.3e-10 70.1 221 33.9
Migut.H02529 Erythranthe guttata HOM05D002962 ORTHO05D003280 3.3e-10 70.1 270 30.0
Phvul.002G033400 Phaseolus vulgaris HOM05D002962 ORTHO05D003280 3.3e-10 70.1 228 32.5
Prupe.7G157800 Prunus persica HOM05D002962 ORTHO05D003280 3.3e-10 70.1 227 33.0
TAR362G0986 Trochodendron aralioides HOM05D002962 ORTHO05D003280 3.3e-10 70.1 220 30.9
Zm00001eb252010 Zea mays HOM05D002962 ORTHO05D003280 3.3e-10 70.1 178 33.7
Nitab4.5_0000399g0060 Nicotiana tabacum HOM05D002962 ORTHO05D003280 4.3e-10 69.7 178 36.5
Rhsim11G0111400 Rhododendron simsii HOM05D002962 ORTHO05D003280 4.3e-10 69.7 214 33.2
Solyc01g102500.3 Solanum lycopersicum HOM05D002962 ORTHO05D003280 5.6e-10 69.3 166 32.5
DCAR_017305 Daucus carota HOM05D002962 ORTHO05D003280 7.3e-10 68.9 325 27.7
THA.LOC104826683 Tarenaya hassleriana HOM05D002962 ORTHO05D003280 7.3e-10 68.9 160 34.4
unitig_736.g22639 Utricularia gibba HOM05D002962 ORTHO05D003280 7.3e-10 68.9 220 31.4
ATR0568G222 Amborella trichopoda HOM05D002962 ORTHO05D003280 9.5e-10 68.6 205 31.2
arahy.Tifrunner.gnm1.ann1.6ZAY02 Arachis hypogaea HOM05D002962 ORTHO05D003280 9.5e-10 68.6 221 33.5
Cfa004337 Carpinus fangiana HOM05D002962 ORTHO05D003280 9.5e-10 68.6 217 32.7
Nitab4.5_0004090g0080 Nicotiana tabacum HOM05D002962 ORTHO05D003280 9.5e-10 68.6 165 37.0
vmacro01646 Vaccinium macrocarpon HOM05D002962 ORTHO05D003280 1.2e-09 68.2 212 33.0
Eucgr.I02415 Eucalyptus grandis HOM05D002962 ORTHO05D003280 1.6e-09 67.8 238 33.6
MD15G1257200 Malus domestica HOM05D002962 ORTHO05D003280 1.6e-09 67.8 211 32.2
Sp5g11320 Schrenkiella parvula HOM05D002962 ORTHO05D003280 1.6e-09 67.8 188 36.7
MELO3C007841.2 Cucumis melo HOM05D002962 ORTHO05D003280 2.1e-09 67.4 227 31.7
TPR.G2377 Trifolium pratense HOM05D002962 ORTHO05D003280 2.1e-09 67.4 237 30.0
TPR.G24105 Trifolium pratense HOM05D002962 ORTHO05D003280 2.1e-09 67.4 221 32.6
SGA_v2.0_scaffold521G52698 Striga asiatica HOM05D002962 ORTHO05D003280 2.8e-09 67.0 241 31.5
CAN.G1379.34 Capsicum annuum HOM05D002962 ORTHO05D003280 3.6e-09 66.6 212 32.1
Ciclev10025466m.g Citrus clementina HOM05D002962 ORTHO05D003280 3.6e-09 66.6 233 33.5
Peaxi162Scf00194g00630 Petunia axillaris HOM05D002962 ORTHO05D003280 3.6e-09 66.6 207 30.0
BcaNung05722 Brassica carinata HOM05D002962 ORTHO05D003280 4.7e-09 66.2 224 33.9
PSO170G1640 Papaver somniferum HOM05D002962 ORTHO05D003280 4.7e-09 66.2 211 32.2
Lalb_Chr05g0212661 Lupinus albus HOM05D002962 ORTHO05D003280 6.2e-09 65.9 237 30.4
Medtr5g020870 Medicago truncatula HOM05D002962 ORTHO05D003280 6.2e-09 65.9 247 29.1
PGSC0003DMG400018228 Solanum tuberosum HOM05D002962 ORTHO05D003280 6.2e-09 65.9 166 30.7
Nn5g29667 Nelumbo nucifera HOM05D002962 ORTHO05D003280 1.4e-08 64.7 179 33.0
VMungo0251G3100 Vigna mungo HOM05D002962 ORTHO05D003280 1.8e-08 64.3 209 32.5
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 2.3e-08 63.9 198 34.8
CSS0004345 Camellia sinensis var. sinensis HOM05D002962 ORTHO05D003280 2.3e-08 63.9 221 32.6
Ca_22294_v3 Cicer arietinum L. HOM05D002962 ORTHO05D003280 2.3e-08 63.9 225 29.8
Ca_22324_v3 Cicer arietinum L. HOM05D002962 ORTHO05D003280 2.3e-08 63.9 225 29.8
EL10As8g23915 Beta vulgaris HOM05D006011 ORTHO05D007421 4.0e-08 63.2 255 29.4
Ca_24872_v3 Cicer arietinum L. HOM05D002962 ORTHO05D003280 4.0e-08 63.2 226 28.3
Phvul.003G255500 Phaseolus vulgaris HOM05D002962 ORTHO05D003280 6.8e-08 62.4 204 34.8
CSS0019880 Camellia sinensis var. sinensis HOM05D002962 ORTHO05D003280 8.9e-08 62.0 221 32.1
Glyma.01G172000 Glycine max HOM05D002962 ORTHO05D003280 8.9e-08 62.0 237 31.6
PGSC0003DMG400003520 Solanum tuberosum HOM05D002962 ORTHO05D003280 8.9e-08 62.0 167 35.3
Glyma.11G071200 Glycine max HOM05D002962 ORTHO05D003280 1.2e-07 61.6 226 29.6
vmacro17814 Vaccinium macrocarpon HOM05D002962 ORTHO05D003280 2.0e-07 60.8 126 39.7
SalBow4G1932 Salvia bowleyana HOM05D002962 ORTHO05D003280 3.4e-07 60.1 165 33.3
Migut.N00996 Erythranthe guttata HOM05D002962 ORTHO05D003280 5.8e-07 59.3 207 28.0
DCAR_029784 Daucus carota HOM05D002962 ORTHO05D003280 7.5e-07 58.9 222 27.5
Glyma.02G054800 Glycine max HOM05D004449 ORTHO05D005473 9.8e-07 58.5 170 35.9
CSS0032232 Camellia sinensis var. sinensis HOM05D002962 ORTHO05D003280 2.2e-06 57.4 212 31.1
Rhsim08G0119500 Rhododendron simsii HOM05D002962 ORTHO05D003280 2.9e-06 57.0 139 35.3
SGA_v2.0_scaffold658G53389 Striga asiatica HOM05D002962 ORTHO05D003280 2.9e-06 57.0 229 29.7
HanXRQChr14g0440561 Helianthus annuus HOM05D002962 ORTHO05D003280 3.7e-06 56.6 161 31.7
MSTRG.2480 Avicennia marina HOM05D002962 ORTHO05D003280 4.9e-06 56.2 241 29.9
DCAR_032160 Daucus carota HOM05D002962 ORTHO05D003280 4.9e-06 56.2 146 32.9
HanXRQChr09g0261381 Helianthus annuus HOM05D002962 ORTHO05D003280 4.9e-06 56.2 248 29.0
SGA_v2.0_scaffold693G53464 Striga asiatica HOM05D002962 ORTHO05D003280 4.9e-06 56.2 240 30.4
BcaC04g23131 Brassica carinata HOM05D002962 ORTHO05D003280 8.3e-06 55.5 199 32.7
Lsat_1_v5_gn_4_152501 Lactuca sativa HOM05D002962 ORTHO05D003280 8.3e-06 55.5 213 30.5


User provided reference genes

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