Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 4.0e-190 667.9 335 100.0
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 3.6e-74 282.7 275 54.2
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 1.9e-70 270.4 301 48.5
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 1.9e-70 270.4 219 62.1
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 2.7e-69 266.5 266 51.5
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 3.5e-69 266.2 259 53.3
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 3.5e-69 266.2 260 55.4
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 6.0e-69 265.4 268 53.4
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.0e-68 264.6 259 53.7
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 1.0e-68 264.6 267 51.7
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 1.0e-68 264.6 258 54.7
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 1.3e-68 264.2 293 48.1
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 2.3e-68 263.5 279 50.5
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 8.6e-68 261.5 258 53.1
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 1.5e-67 260.8 261 53.3
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 1.5e-67 260.8 264 52.3
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 2.5e-67 260.0 263 54.0
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 3.3e-67 259.6 272 48.9
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 4.3e-67 259.2 261 53.3
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 4.3e-67 259.2 261 50.6
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 9.5e-67 258.1 268 51.9
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 9.5e-67 258.1 258 53.1
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 1.2e-66 257.7 278 50.7
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.2e-66 257.7 261 50.6
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 1.2e-66 257.7 266 50.8
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 1.2e-66 257.7 304 48.7
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 2.1e-66 256.9 259 51.4
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 2.8e-66 256.5 259 52.1
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 3.6e-66 256.1 259 51.0
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 4.7e-66 255.8 284 49.6
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 4.7e-66 255.8 223 57.0
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 4.7e-66 255.8 261 51.7
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 4.7e-66 255.8 223 57.4
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.1e-65 254.6 259 49.8
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 1.1e-65 254.6 266 50.8
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 1.4e-65 254.2 271 51.7
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 1.8e-65 253.8 278 49.3
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 1.8e-65 253.8 260 51.2
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 2.4e-65 253.4 264 52.7
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 3.1e-65 253.1 219 58.4
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 3.1e-65 253.1 261 51.7
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 4.0e-65 252.7 258 49.6
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 4.0e-65 252.7 261 49.4
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 8.9e-65 251.5 264 51.5
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 1.2e-64 251.1 259 48.3
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 2.0e-64 250.4 259 52.1
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 2.6e-64 250.0 259 51.4
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 2.6e-64 250.0 265 50.9
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 2.6e-64 250.0 295 45.4
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 4.4e-64 249.2 223 56.1
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 5.8e-64 248.8 275 50.5
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 5.8e-64 248.8 258 51.2
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 5.8e-64 248.8 260 50.0
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 7.6e-64 248.4 221 57.5
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 7.6e-64 248.4 310 46.1
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 1.7e-63 247.3 255 51.4
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 1.7e-63 247.3 258 50.8
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 2.2e-63 246.9 258 50.0
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 3.8e-63 246.1 280 49.3
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 4.9e-63 245.7 221 56.6
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 6.4e-63 245.4 256 50.4
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 8.4e-63 245.0 330 43.6
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 8.4e-63 245.0 266 50.0
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 4.1e-62 242.7 301 47.2
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 9.2e-62 241.5 259 49.0
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 1.2e-61 241.1 258 50.0
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 1.2e-61 241.1 217 53.5
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 1.6e-61 240.7 269 49.8
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 2.1e-61 240.4 258 49.6
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 2.1e-61 240.4 260 49.6
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 3.5e-61 239.6 264 48.5
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 4.6e-61 239.2 259 49.4
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 4.6e-61 239.2 259 48.3
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 6.0e-61 238.8 287 46.7
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 1.0e-60 238.0 286 45.5
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 1.3e-60 237.7 261 48.7
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 2.3e-60 236.9 318 44.7
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 5.1e-60 235.7 287 46.7
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 5.1e-60 235.7 221 55.2
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 5.1e-60 235.7 291 44.3
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 6.6e-60 235.3 254 50.4
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.1e-59 234.6 291 46.0
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 1.5e-59 234.2 268 47.8
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.5e-59 234.2 282 47.5
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 1.9e-59 233.8 266 48.9
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 4.3e-59 232.6 262 50.8
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 5.6e-59 232.3 218 55.0
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 7.3e-59 231.9 259 48.6
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 9.6e-59 231.5 291 46.4
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 1.2e-58 231.1 259 49.0
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 2.8e-58 229.9 221 52.5
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 2.8e-58 229.9 338 39.9
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 3.6e-58 229.6 287 44.3
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 4.7e-58 229.2 259 47.1
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 6.2e-58 228.8 260 47.3
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 8.1e-58 228.4 287 44.3
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 8.1e-58 228.4 266 47.4
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 3.1e-57 226.5 272 48.2
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 4.0e-57 226.1 295 42.4
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 5.2e-57 225.7 286 45.1
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 2.6e-56 223.4 259 47.5
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 2.6e-56 223.4 296 41.9
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 2.6e-56 223.4 254 48.4
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 3.4e-56 223.0 260 48.8
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 4.4e-56 222.6 257 47.9
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 4.4e-56 222.6 257 47.5
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 5.8e-56 222.2 296 42.2
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 9.9e-56 221.5 257 47.1
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 9.9e-56 221.5 319 41.7
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 1.3e-55 221.1 298 41.9
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 1.3e-55 221.1 298 41.9
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 2.9e-55 219.9 296 41.6
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 2.9e-55 219.9 298 41.9
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 3.8e-55 219.5 298 41.9
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 9.3e-54 214.9 270 43.3
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 9.3e-54 214.9 261 46.0
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 1.6e-53 214.2 326 39.3
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 4.6e-53 212.6 288 43.1
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 1.5e-51 207.6 262 43.5
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 7.3e-51 205.3 361 38.2
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 6.2e-50 202.2 200 55.5
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 1.2e-48 198.0 214 50.9
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 9.9e-48 194.9 222 46.4
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 1.3e-47 194.5 202 50.5
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 2.2e-47 193.7 202 50.5
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 2.9e-47 193.4 198 51.0
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 1.4e-46 191.0 217 46.1
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 2.1e-45 187.2 218 45.4
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 2.7e-45 186.8 200 47.5
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 3.5e-45 186.4 200 47.5
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 7.9e-45 185.3 200 48.0
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 7.9e-45 185.3 200 47.5
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 3.0e-44 183.3 200 48.0
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 5.1e-44 182.6 200 49.0
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 1.9e-43 180.6 159 57.9
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 5.6e-43 179.1 200 47.5
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.8e-41 174.1 213 44.6
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 9.9e-40 168.3 204 48.0
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 2.2e-39 167.2 147 58.5
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 3.8e-39 166.4 229 41.0
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 2.4e-38 163.7 259 40.2
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 1.3e-34 151.4 226 39.8
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 1.6e-34 151.0 214 37.9
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 2.8e-34 150.2 138 58.0
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 2.6e-32 143.7 140 52.1
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 2.5e-30 137.1 151 46.4
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 4.6e-29 132.9 235 37.9
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 1.8e-28 131.0 124 50.8
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 2.3e-28 130.6 146 41.8
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 5.1e-28 129.4 144 50.7
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 4.3e-27 126.3 130 53.8
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 5.7e-27 125.9 119 58.0
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 3.7e-26 123.2 130 53.8
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 1.8e-25 120.9 130 53.1
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 2.4e-25 120.6 131 48.9
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 6.9e-25 119.0 144 42.4
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.2e-24 118.2 192 37.5
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 3.4e-24 116.7 214 33.2
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 4.5e-24 116.3 117 48.7
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 1.1e-22 111.7 251 30.3
Actinidia19883 Actinidia chinensis HOM05D001860 ORTHO05D004922 1.1e-14 85.1 106 47.2
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 2.5e-14 84.0 76 52.6
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 5.5e-14 82.8 80 51.2
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 1.0e-12 78.6 92 45.7
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 1.4e-12 78.2 89 46.1
MCO03G203 Micromonas commoda HOM05D023757 ORTHO05D024904 3.3e-11 73.6 165 34.5
CBR_g34579 Chara braunii HOM05D001860 ORTHO05D019626 1.4e-09 68.2 170 32.9
Cfa024139 Carpinus fangiana HOM05D001860 ORTHO05D004922 2.0e-08 64.3 152 30.3
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 4.5e-08 63.2 82 48.8
AagrBONN_evm.TU.Sc2ySwM_368.1265 Anthoceros agrestis HOM05D019459 ORTHO05D019626 5.0e-07 59.7 146 30.8
SMO239G0194 Selaginella moellendorffii HOM05D001860 ORTHO05D376151 5.0e-07 59.7 88 52.3
CDE08G0834 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 2.5e-06 57.4 69 44.9
PRCOL_00001331 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 7.2e-06 55.8 147 32.0


User provided reference genes

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