Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO239G0161 Selaginella moellendorffii HOM05D006192 ORTHO05D008003 2.6e-283 978.0 482 100.0
Mapoly0010s0049 Marchantia polymorpha HOM05D006192 ORTHO05D008003 7.0e-196 687.6 423 77.8
PGSC0003DMG400019063 Solanum tuberosum HOM05D006192 ORTHO05D008003 2.3e-194 682.6 430 76.5
Os05g0387200 Oryza sativa ssp. japonica HOM05D006192 ORTHO05D008003 2.9e-194 682.2 398 81.4
Sopen08g018650 Solanum pennellii HOM05D006192 ORTHO05D008003 3.8e-194 681.8 430 76.5
Solyc08g063080.3 Solanum lycopersicum HOM05D006192 ORTHO05D008003 6.6e-194 681.0 449 73.9
THA.LOC104818573 Tarenaya hassleriana HOM05D006192 ORTHO05D008003 8.6e-194 680.6 443 73.8
Peaxi162Scf00327g00612 Petunia axillaris HOM05D006192 ORTHO05D008003 1.1e-193 680.2 400 80.5
Potri.006G228000 Populus trichocarpa HOM05D006192 ORTHO05D008003 4.3e-193 678.3 400 80.2
Manes.03G048700 Manihot esculenta HOM05D006192 ORTHO05D008003 7.3e-193 677.6 430 75.6
AL7G18640 Arabidopsis lyrata HOM05D006192 ORTHO05D008003 9.5e-193 677.2 445 73.7
FvH4_2g31750 Fragaria vesca HOM05D006192 ORTHO05D008003 1.2e-192 676.8 450 73.3
Zm00001eb347070 Zea mays HOM05D006192 ORTHO05D008003 1.6e-192 676.4 398 80.7
FAN20G2998 Fragaria x ananassa HOM05D006192 ORTHO05D008003 2.1e-192 676.0 450 73.3
FAN24G0058 Fragaria x ananassa HOM05D006192 ORTHO05D008003 2.1e-192 676.0 450 73.1
Nitab4.5_0002829g0050 Nicotiana tabacum HOM05D006192 ORTHO05D008003 2.1e-192 676.0 400 80.0
Nitab4.5_0005436g0010 Nicotiana tabacum HOM05D006192 ORTHO05D008003 2.1e-192 676.0 400 80.0
RcHm_v2.0_Chr6g0311071 Rosa chinensis HOM05D006192 ORTHO05D008003 2.8e-192 675.6 400 79.5
AT4G33030 Arabidopsis thaliana HOM05D006192 ORTHO05D008003 4.7e-192 674.9 445 73.5
CARHR241040 Cardamine hirsuta HOM05D006192 ORTHO05D008003 4.7e-192 674.9 447 72.7
MELO3C016873.2 Cucumis melo HOM05D006192 ORTHO05D008003 4.7e-192 674.9 400 80.0
FAN15G2167 Fragaria x ananassa HOM05D006192 ORTHO05D008003 4.7e-192 674.9 450 73.1
AUR62009135 Chenopodium quinoa HOM05D006192 ORTHO05D008003 8.0e-192 674.1 481 70.5
Carub.0007s0745 Capsella rubella HOM05D006192 ORTHO05D008003 1.0e-191 673.7 476 70.0
AUR62039119 Chenopodium quinoa HOM05D006192 ORTHO05D008003 1.0e-191 673.7 481 70.3
AUR62043945 Chenopodium quinoa HOM05D006192 ORTHO05D008003 1.0e-191 673.7 481 70.3
PGR031G3391 Punica granatum HOM05D006192 ORTHO05D008003 1.0e-191 673.7 454 73.8
BraA01t00499Z Brassica rapa HOM05D006192 ORTHO05D008003 1.4e-191 673.3 398 79.9
Thhalv10025085m.g Eutrema salsugineum HOM05D006192 ORTHO05D008003 1.4e-191 673.3 449 72.2
CsaV3_4G035660 Cucumis sativus L. HOM05D006192 ORTHO05D008003 1.8e-191 672.9 486 68.7
FAN27G0797 Fragaria x ananassa HOM05D006192 ORTHO05D008003 1.8e-191 672.9 484 70.0
CAN.G9.23 Capsicum annuum HOM05D006192 ORTHO05D008003 2.3e-191 672.5 400 79.8
Glyma.03G131100 Glycine max HOM05D006192 ORTHO05D008003 2.3e-191 672.5 402 79.6
Ciclev10008149m.g Citrus clementina HOM05D006192 ORTHO05D008003 3.1e-191 672.2 429 74.8
ClCG05G017890 Citrullus lanatus HOM05D006192 ORTHO05D008003 4.0e-191 671.8 486 68.9
BcaC09g52100 Brassica carinata HOM05D006192 ORTHO05D008003 6.8e-191 671.0 398 79.4
C01p05650 Brassica napus HOM05D006192 ORTHO05D008003 6.8e-191 671.0 398 79.6
BolC1t00544H Brassica oleracea HOM05D006192 ORTHO05D008003 6.8e-191 671.0 398 79.6
Sp7g30790 Schrenkiella parvula HOM05D006192 ORTHO05D008003 6.8e-191 671.0 428 75.5
A01p05160 Brassica napus HOM05D006192 ORTHO05D008003 8.9e-191 670.6 398 79.4
Glyma.19G133100 Glycine max HOM05D006192 ORTHO05D008003 8.9e-191 670.6 429 76.0
Aa31LG4G11110 Aethionema arabicum HOM05D006192 ORTHO05D008003 1.5e-190 669.8 399 78.9
DCAR_000802 Daucus carota HOM05D006192 ORTHO05D008003 1.5e-190 669.8 400 78.8
Eucgr.C00658 Eucalyptus grandis HOM05D006192 ORTHO05D008003 1.5e-190 669.8 404 78.5
A03p61760 Brassica napus HOM05D006192 ORTHO05D008003 3.4e-190 668.7 398 79.4
Migut.A00129 Erythranthe guttata HOM05D006192 ORTHO05D008003 3.4e-190 668.7 452 71.9
Sed0014899 Sechium edule HOM05D006192 ORTHO05D008003 3.4e-190 668.7 404 78.2
Actinidia30319 Actinidia chinensis HOM05D006192 ORTHO05D008003 4.4e-190 668.3 445 73.3
Ah.11g044810 Amaranthus hybridus HOM05D006192 ORTHO05D008003 4.4e-190 668.3 398 80.4
Haze_18173 Corylus avellana HOM05D006192 ORTHO05D008003 4.4e-190 668.3 454 72.5
Gohir.D05G043400 Gossypium hirsutum HOM05D006192 ORTHO05D008003 4.4e-190 668.3 414 77.5
Prupe.1G411000 Prunus persica HOM05D006192 ORTHO05D008003 4.4e-190 668.3 400 78.2
BolC7t46390H Brassica oleracea HOM05D006192 ORTHO05D008003 7.5e-190 667.5 398 79.4
BraA03t15213Z Brassica rapa HOM05D006192 ORTHO05D008003 7.5e-190 667.5 398 79.4
Gorai.009G044500 Gossypium raimondii HOM05D006192 ORTHO05D008003 7.5e-190 667.5 414 77.8
MD15G1058400 Malus domestica HOM05D006192 ORTHO05D008003 7.5e-190 667.5 432 74.3
Dinv22891 Davidia involucrata HOM05D006192 ORTHO05D008003 9.8e-190 667.2 445 72.8
CANSAT25G1130 Cannabis sativa HOM05D006192 ORTHO05D008003 1.3e-189 666.8 399 78.9
Cfa017964 Carpinus fangiana HOM05D006192 ORTHO05D008003 1.3e-189 666.8 400 79.2
Lalb_Chr20g0110241 Lupinus albus HOM05D006192 ORTHO05D008003 1.3e-189 666.8 425 75.1
Dinv27994 Davidia involucrata HOM05D006192 ORTHO05D008003 1.7e-189 666.4 441 73.0
C07p59470 Brassica napus HOM05D006192 ORTHO05D008003 2.2e-189 666.0 398 78.9
Pp3c10_9630 Physcomitrium patens HOM05D006192 ORTHO05D008003 2.2e-189 666.0 483 68.3
CSS0041370 Camellia sinensis var. sinensis HOM05D006192 ORTHO05D008003 3.7e-189 665.2 441 73.7
Cc08_g10700 Coffea canephora HOM05D006192 ORTHO05D008003 3.7e-189 665.2 398 79.9
Thecc.09G055000 Theobroma cacao HOM05D006192 ORTHO05D008003 3.7e-189 665.2 436 74.1
VMungo1383G3565 Vigna mungo HOM05D006192 ORTHO05D008003 3.7e-189 665.2 431 75.2
EL10Ac2g03859 Beta vulgaris HOM05D006192 ORTHO05D008003 4.9e-189 664.8 398 79.9
Nn7g37295 Nelumbo nucifera HOM05D006192 ORTHO05D008003 4.9e-189 664.8 400 78.8
TWI34G1683 Tripterygium wilfordii HOM05D006192 ORTHO05D008003 6.4e-189 664.5 400 78.2
PSO384G1492 Papaver somniferum HOM05D006192 ORTHO05D008003 1.1e-188 663.7 400 77.8
Gohir.A05G041700 Gossypium hirsutum HOM05D006192 ORTHO05D008003 1.4e-188 663.3 398 79.4
Phvul.001G127100 Phaseolus vulgaris HOM05D006192 ORTHO05D008003 1.4e-188 663.3 400 78.8
SalBow4G2073 Salvia bowleyana HOM05D006192 ORTHO05D008003 2.4e-188 662.5 398 78.4
COL.COLO4_21071 Corchorus olitorius HOM05D006192 ORTHO05D008003 3.2e-188 662.1 398 79.1
Hund19447 Selenicereus undatus HOM05D006192 ORTHO05D008003 3.2e-188 662.1 398 78.6
Rhsim07G0125300 Rhododendron simsii HOM05D006192 ORTHO05D008003 4.1e-188 661.8 400 77.8
Lj7A269G19 Lonicera japonica HOM05D006192 ORTHO05D008003 7.0e-188 661.0 443 72.0
QL02p001073 Quercus lobata HOM05D006192 ORTHO05D008003 7.0e-188 661.0 443 72.9
arahy.Tifrunner.gnm1.ann1.S5W95P Arachis hypogaea HOM05D006192 ORTHO05D008003 1.2e-187 660.2 400 78.0
MSTRG.25952 Avicennia marina HOM05D006192 ORTHO05D008003 1.6e-187 659.8 400 78.5
PSO339G5117 Papaver somniferum HOM05D006192 ORTHO05D008003 2.7e-187 659.1 400 77.2
Oeu003988.1 Olea europaea HOM05D006192 ORTHO05D008003 3.5e-187 658.7 398 77.9
SalBow5G1678 Salvia bowleyana HOM05D006192 ORTHO05D008003 3.5e-187 658.7 417 75.1
Oeu009349.1 Olea europaea HOM05D006192 ORTHO05D008003 6.0e-187 657.9 398 77.9
ECA246G2418 Erigeron canadensis HOM05D006192 ORTHO05D008003 7.8e-187 657.5 480 67.3
CiPaw.15G038100 Carya illinoinensis HOM05D006192 ORTHO05D008003 1.0e-186 657.1 400 78.2
TPR.G32742 Trifolium pratense HOM05D006192 ORTHO05D008003 1.0e-186 657.1 430 73.5
AagrBONN_evm.TU.Sc2ySwM_368.1072 Anthoceros agrestis HOM05D006192 ORTHO05D008003 1.3e-186 656.8 397 77.6
arahy.Tifrunner.gnm1.ann1.44XN4P Arachis hypogaea HOM05D006192 ORTHO05D008003 1.3e-186 656.8 400 78.0
HanXRQChr06g0173891 Helianthus annuus HOM05D006192 ORTHO05D008003 1.3e-186 656.8 436 72.5
Sabra06G0176500 Salix brachista HOM05D006192 ORTHO05D008003 1.3e-186 656.8 424 74.5
Duzib187G0943 Durio zibethinus HOM05D006192 ORTHO05D008003 1.7e-186 656.4 398 78.4
Medtr7g090510 Medicago truncatula HOM05D006192 ORTHO05D008003 2.3e-186 656.0 400 77.5
Lj1g0026013 Lotus japonicus HOM05D006192 ORTHO05D008003 3.0e-186 655.6 445 71.7
Lsat_1_v5_gn_3_23900 Lactuca sativa HOM05D006192 ORTHO05D008003 3.9e-186 655.2 456 69.7
Ca_08416_v3 Cicer arietinum L. HOM05D006192 ORTHO05D008003 6.6e-186 654.4 398 77.1
SGA_v2.0_scaffold20G09220 Striga asiatica HOM05D006192 ORTHO05D008003 3.3e-185 652.1 472 68.4
Psat3g076360 Pisum sativum HOM05D006192 ORTHO05D008003 7.3e-185 651.0 432 72.5
MBI16_g06012_MAGBIO Magnolia biondii HOM05D006192 ORTHO05D008003 9.5e-185 650.6 400 76.5
Sc01g0008030 Simmondsia chinensis HOM05D006192 ORTHO05D008003 9.5e-185 650.6 431 73.1
ATR0307G063 Amborella trichopoda HOM05D006192 ORTHO05D008003 8.0e-184 647.5 445 71.5
CBR_g23789 Chara braunii HOM05D006192 ORTHO05D008003 7.0e-180 634.4 430 70.5
HPP92_006663 Vanilla planifolia HOM05D006192 ORTHO05D008003 3.7e-173 612.1 388 75.0
BcaNung02151 Brassica carinata HOM05D006192 ORTHO05D008003 2.3e-170 602.8 398 73.4
Cre16.g656400 Chlamydomonas reinhardtii HOM05D006192 ORTHO05D008003 4.0e-167 592.0 397 69.5
GSVIVG01035394001 Vitis vinifera HOM05D006192 ORTHO05D008003 2.9e-165 585.9 463 64.4
MCO15G376 Micromonas commoda HOM05D006192 ORTHO05D008003 1.1e-159 567.4 395 64.8
PRCOL_00003517 Prasinoderma coloniale HOM05D006192 ORTHO05D008003 8.7e-154 547.7 400 63.5
SalBow5G5187 Salvia bowleyana HOM05D006192 ORTHO05D008003 4.9e-149 531.9 367 70.3
TAR369G0638 Trochodendron aralioides HOM05D006192 ORTHO05D008003 1.9e-145 520.0 301 80.1
unitig_748.g7527 Utricularia gibba HOM05D006192 ORTHO05D008003 8.1e-144 514.6 397 65.2
Lj7A268T22 Lonicera japonica HOM05D006192 ORTHO05D008003 1.8e-138 496.9 293 81.2
Atru.chr7.1090 Acer truncatum HOM05D006192 ORTHO05D008003 1.1e-137 494.2 295 79.7
SEGI_22284 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 6.2e-136 488.4 275 81.5
CDE02G3162 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 2.4e-119 433.3 252 78.6
SalBow8G2204 Salvia bowleyana HOM05D006192 ORTHO05D008003 4.0e-90 336.3 237 67.9
CDE04G0209 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 1.2e-86 324.7 189 76.7
CDE04G3367 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 1.1e-71 275.0 176 76.7
SEGI_03729 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 1.4e-55 221.5 134 80.6
SalBow8G3463 Salvia bowleyana HOM05D006192 ORTHO05D008003 6.0e-54 216.1 194 57.2
MD08G1063500 Malus domestica HOM05D006192 ORTHO05D008003 1.9e-52 211.1 130 73.8
SalBow8G1594 Salvia bowleyana HOM05D006192 ORTHO05D008003 7.6e-49 199.1 129 72.9
SalBow5G3520 Salvia bowleyana HOM05D000200 ORTHO05D000262 2.4e-42 177.6 143 65.0
SalBow4G3004 Salvia bowleyana HOM05D006192 ORTHO05D001699 3.3e-28 130.6 94 67.0
SalBow8G4783 Salvia bowleyana HOM05D006192 ORTHO05D358531 8.1e-27 125.9 110 57.3
Atru.chr7.1089 Acer truncatum HOM05D006192 ORTHO05D008003 7.9e-22 109.4 113 52.2
BcaC01g05298 Brassica carinata HOM05D006192 ORTHO05D091607 1.5e-12 78.6 59 62.7
Mapoly0065s0029 Marchantia polymorpha HOM05D000776 ORTHO05D001624 1.7e-08 65.1 155 30.3
Cc08_g14210 Coffea canephora HOM05D000776 ORTHO05D001624 3.8e-08 63.9 154 27.9
Mapoly0068s0034 Marchantia polymorpha HOM05D000776 ORTHO05D001624 3.8e-08 63.9 130 32.3
MSTRG.13831 Avicennia marina HOM05D000776 ORTHO05D001624 4.2e-07 60.5 156 26.9
Cpa.g.sc74.69 Carica papaya HOM05D000776 ORTHO05D001624 7.2e-07 59.7 156 26.9
SalBow1G1568 Salvia bowleyana HOM05D000776 ORTHO05D001624 7.2e-07 59.7 155 25.2
CSS0022914 Camellia sinensis var. sinensis HOM05D000776 ORTHO05D001624 1.6e-06 58.5 173 28.3
Dinv37670 Davidia involucrata HOM05D000776 ORTHO05D001624 1.6e-06 58.5 179 27.9
Glyma.07G271200 Glycine max HOM05D000776 ORTHO05D001624 1.6e-06 58.5 131 30.5
SGA_v2.0_scaffold144G35964 Striga asiatica HOM05D000776 ORTHO05D001624 1.6e-06 58.5 154 26.6
Potri.003G123700 Populus trichocarpa HOM05D000776 ORTHO05D001624 2.1e-06 58.2 173 27.7
Ciclev10020907m.g Citrus clementina HOM05D000776 ORTHO05D001624 3.6e-06 57.4 155 27.1
Aa31LG2G650 Aethionema arabicum HOM05D000776 ORTHO05D001624 4.6e-06 57.0 153 26.1


User provided reference genes

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