Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO239G0146 Selaginella moellendorffii HOM05D006050 ORTHO05D007457 2.1e-180 635.6 326 100.0
AagrBONN_evm.TU.Sc2ySwM_228.2617 Anthoceros agrestis HOM05D006050 ORTHO05D007457 1.6e-127 459.9 326 72.4
TAR627G0203 Trochodendron aralioides HOM05D006050 ORTHO05D007457 1.3e-116 423.7 326 67.2
Dinv30732 Davidia involucrata HOM05D006050 ORTHO05D007457 1.7e-113 413.3 326 64.7
Thecc.06G151800 Theobroma cacao HOM05D006050 ORTHO05D007457 5.0e-113 411.8 326 66.0
Mapoly0001s0010 Marchantia polymorpha HOM05D006050 ORTHO05D007457 1.5e-112 410.2 323 65.9
PGR083G2192 Punica granatum HOM05D006050 ORTHO05D007457 5.6e-112 408.3 326 65.6
Gorai.009G155500 Gossypium raimondii HOM05D006050 ORTHO05D007457 1.6e-111 406.8 326 66.0
Gohir.A05G149000 Gossypium hirsutum HOM05D006050 ORTHO05D007457 1.8e-110 403.3 326 65.6
PSO017G0250 Papaver somniferum HOM05D006050 ORTHO05D007457 3.0e-110 402.5 327 63.0
Aqoxy4G00089 Aquilegia oxysepala HOM05D006050 ORTHO05D007457 4.0e-110 402.1 326 62.9
Gohir.D05G151500 Gossypium hirsutum HOM05D006050 ORTHO05D007457 5.2e-110 401.7 326 65.3
MD05G1284800 Malus domestica HOM05D006050 ORTHO05D007457 5.2e-110 401.7 326 66.0
PSO170G3783 Papaver somniferum HOM05D006050 ORTHO05D007457 6.8e-110 401.4 327 63.0
QL05p058532 Quercus lobata HOM05D006050 ORTHO05D007457 1.2e-109 400.6 325 64.3
MD10G1263200 Malus domestica HOM05D006050 ORTHO05D007457 1.7e-108 396.7 326 65.6
Actinidia19520 Actinidia chinensis HOM05D006050 ORTHO05D007457 2.9e-108 396.0 314 65.6
vmacro04186 Vaccinium macrocarpon HOM05D006050 ORTHO05D007457 2.9e-108 396.0 326 63.5
Rhsim13G0194500 Rhododendron simsii HOM05D006050 ORTHO05D007457 3.7e-108 395.6 324 63.6
Atru.chr10.1253 Acer truncatum HOM05D006050 ORTHO05D007457 6.4e-108 394.8 326 63.2
FvH4_3g05720 Fragaria vesca HOM05D006050 ORTHO05D007457 1.2e-106 390.6 326 63.5
Potri.011G080600 Populus trichocarpa HOM05D006050 ORTHO05D007457 2.7e-106 389.4 326 62.0
GSVIVG01021436001 Vitis vinifera HOM05D006050 ORTHO05D007457 2.7e-106 389.4 310 66.1
Hma1.2p1_0286F.1_g114100 Hydrangea macrophylla HOM05D006050 ORTHO05D007457 7.8e-106 387.9 324 63.0
RcHm_v2.0_Chr5g0013951 Rosa chinensis HOM05D006050 ORTHO05D007457 1.3e-105 387.1 330 62.7
FAN21G0460 Fragaria x ananassa HOM05D006050 ORTHO05D007457 3.9e-105 385.6 322 63.0
CsaV3_1G032660 Cucumis sativus L. HOM05D006050 ORTHO05D007457 5.0e-105 385.2 326 61.3
FAN25G0090 Fragaria x ananassa HOM05D006050 ORTHO05D007457 8.6e-105 384.4 322 62.7
Lj2C306G12 Lonicera japonica HOM05D006050 ORTHO05D007457 8.6e-105 384.4 326 63.2
CBR_g3965 Chara braunii HOM05D006050 ORTHO05D007457 1.1e-104 384.0 326 62.0
ClCG03G007090 Citrullus lanatus HOM05D006050 ORTHO05D007457 1.5e-104 383.6 333 60.1
Solyc02g070560.3 Solanum lycopersicum HOM05D006050 ORTHO05D007457 4.3e-104 382.1 326 61.0
Peaxi162Scf00170g00718 Petunia axillaris HOM05D006050 ORTHO05D007457 7.3e-104 381.3 324 60.2
Manes.17G069500 Manihot esculenta HOM05D006050 ORTHO05D007457 3.6e-103 379.0 326 61.0
TWI73G0574 Tripterygium wilfordii HOM05D006050 ORTHO05D007457 4.7e-103 378.6 326 63.2
Nitab4.5_0002275g0100 Nicotiana tabacum HOM05D006050 ORTHO05D007457 1.8e-102 376.7 354 57.3
Nn3g20737 Nelumbo nucifera HOM05D006050 ORTHO05D007457 2.3e-102 376.3 327 60.9
Nitab4.5_0009607g0030 Nicotiana tabacum HOM05D006050 ORTHO05D007457 2.3e-102 376.3 354 56.8
Migut.M00918 Erythranthe guttata HOM05D006050 ORTHO05D007457 4.0e-102 375.6 326 60.1
CAN.G650.1 Capsicum annuum HOM05D006050 ORTHO05D007457 6.8e-102 374.8 326 59.8
Cc09_g09460 Coffea canephora HOM05D006050 ORTHO05D007457 1.2e-101 374.0 326 60.4
Sabra11G0069700 Salix brachista HOM05D006050 ORTHO05D007457 1.2e-101 374.0 326 60.7
Oeu052380.1 Olea europaea HOM05D006050 ORTHO05D007457 2.6e-101 372.9 326 60.7
Sed0022060 Sechium edule HOM05D006050 ORTHO05D007457 4.4e-101 372.1 326 59.5
Haze_05583 Corylus avellana HOM05D006050 ORTHO05D007457 5.8e-101 371.7 326 61.7
Eucgr.D00300 Eucalyptus grandis HOM05D006050 ORTHO05D007457 9.8e-101 370.9 326 60.4
Gorai.011G043000 Gossypium raimondii HOM05D006050 ORTHO05D007457 2.2e-100 369.8 326 60.1
HanXRQChr02g0047351 Helianthus annuus HOM05D006050 ORTHO05D007457 3.2e-99 365.9 326 59.5
Sp7g15790 Schrenkiella parvula HOM05D006050 ORTHO05D007457 2.3e-97 359.8 326 60.4
CiPaw.09G124900 Carya illinoinensis HOM05D006050 ORTHO05D007457 3.0e-97 359.4 309 61.5
Sc05g0006350 Simmondsia chinensis HOM05D006050 ORTHO05D007457 1.1e-96 357.5 317 60.3
HPP92_021321 Vanilla planifolia HOM05D006050 ORTHO05D007457 4.3e-96 355.5 323 57.6
Thhalv10025036m.g Eutrema salsugineum HOM05D006050 ORTHO05D007457 8.1e-95 351.3 326 59.5
Sabra11G0067500 Salix brachista HOM05D006050 ORTHO05D007457 8.1e-95 351.3 357 55.2
AT4G18270 Arabidopsis thaliana HOM05D006050 ORTHO05D007457 1.2e-93 347.4 326 58.3
AL7G36120 Arabidopsis lyrata HOM05D006050 ORTHO05D007457 2.6e-93 346.3 326 58.3
A03p51180 Brassica napus HOM05D006050 ORTHO05D007457 4.4e-93 345.5 326 56.4
BraA03t14200Z Brassica rapa HOM05D006050 ORTHO05D007457 4.4e-93 345.5 326 56.4
C07p49580 Brassica napus HOM05D006050 ORTHO05D007457 9.9e-93 344.4 326 56.7
THA.LOC104812850 Tarenaya hassleriana HOM05D006050 ORTHO05D007457 1.3e-92 344.0 328 58.2
BolC7t45462H Brassica oleracea HOM05D006050 ORTHO05D007457 2.2e-92 343.2 326 56.4
ECA248G2274 Erigeron canadensis HOM05D006050 ORTHO05D007457 5.4e-91 338.6 308 58.8
Duzib192G0778 Durio zibethinus HOM05D006050 ORTHO05D007457 1.3e-89 334.0 326 57.7
Lj6g0009694 Lotus japonicus HOM05D006050 ORTHO05D007457 1.7e-89 333.6 326 53.4
Ca_00551_v3 Cicer arietinum L. HOM05D006050 ORTHO05D007457 1.5e-88 330.5 326 53.1
Aa31LG6G960 Aethionema arabicum HOM05D006050 ORTHO05D007457 1.9e-88 330.1 326 56.1
Psat1g190800 Pisum sativum HOM05D006050 ORTHO05D007457 7.3e-88 328.2 326 53.1
Cpa.g.sc166.17 Carica papaya HOM05D006050 ORTHO05D007457 3.6e-87 325.9 267 63.7
Duzib235G1544 Durio zibethinus HOM05D006050 ORTHO05D007457 6.2e-87 325.1 261 65.1
Glyma.15G094900 Glycine max HOM05D006050 ORTHO05D007457 6.2e-87 325.1 327 53.5
Phvul.006G163900 Phaseolus vulgaris HOM05D006050 ORTHO05D007457 6.2e-87 325.1 326 54.0
MELO3C002716.2 Cucumis melo HOM05D006050 ORTHO05D007457 2.4e-86 323.2 265 63.0
VMungo0540G2452 Vigna mungo HOM05D006050 ORTHO05D007457 8.9e-86 321.2 326 53.1
TPR.G28613 Trifolium pratense HOM05D006050 ORTHO05D007457 1.5e-85 320.5 328 52.7
ATR0044G011 Amborella trichopoda HOM05D006050 ORTHO05D007457 4.4e-85 318.9 265 63.0
DCAR_003921 Daucus carota HOM05D006050 ORTHO05D007457 5.8e-85 318.5 265 62.6
HPP92_008747 Vanilla planifolia HOM05D006050 ORTHO05D007457 2.9e-84 316.2 326 53.1
Ah.09g232650 Amaranthus hybridus HOM05D006050 ORTHO05D007457 1.0e-81 307.8 326 50.0
SalBow8G2368 Salvia bowleyana HOM05D006050 ORTHO05D007457 2.3e-81 306.6 265 58.9
EL10Ac8g19724 Beta vulgaris HOM05D006050 ORTHO05D007457 3.9e-81 305.8 320 52.2
Lsat_1_v5_gn_1_97741 Lactuca sativa HOM05D006050 ORTHO05D007457 3.9e-81 305.8 265 61.1
arahy.Tifrunner.gnm1.ann1.49YCVY Arachis hypogaea HOM05D006050 ORTHO05D007457 6.6e-81 305.1 326 50.9
arahy.Tifrunner.gnm1.ann1.9VA34X Arachis hypogaea HOM05D006050 ORTHO05D007457 6.6e-81 305.1 326 50.9
Medtr2g019630 Medicago truncatula HOM05D006050 ORTHO05D007457 8.7e-81 304.7 326 50.3
Ciclev10017950m.g Citrus clementina HOM05D006050 ORTHO05D007457 4.0e-78 295.8 307 52.4
SGA_v2.0_scaffold1G00164 Striga asiatica HOM05D006050 ORTHO05D007457 9.6e-72 274.6 326 47.2
FvH4_3g05710 Fragaria vesca HOM05D006050 ORTHO05D007457 3.1e-70 269.6 280 53.2
MBI10_g02216_MAGBIO Magnolia biondii HOM05D006050 ORTHO05D007457 1.7e-68 263.8 195 70.8
AUR62027517 Chenopodium quinoa HOM05D006050 ORTHO05D007457 5.1e-65 252.3 433 38.8
Carub.0007s2301 Capsella rubella HOM05D006050 ORTHO05D007457 1.3e-57 227.6 193 64.2
Lalb_Chr18g0055531 Lupinus albus HOM05D006050 ORTHO05D007457 3.3e-56 223.0 193 60.6
PGSC0003DMG401021159 Solanum tuberosum HOM05D006050 ORTHO05D007457 1.2e-53 214.5 166 67.5
PRCOL_00000982 Prasinoderma coloniale HOM05D006050 ORTHO05D007457 3.4e-53 213.0 332 43.4
SEGI_21633 Sequoiadendron giganteum HOM05D006050 ORTHO05D007457 2.2e-52 210.3 154 64.9
SGA_v2.0_scaffold333G48995 Striga asiatica HOM05D001706 ORTHO05D007457 2.3e-49 200.3 297 41.4
BcaNung05669 Brassica carinata HOM05D006050 ORTHO05D007457 2.2e-47 193.7 166 63.3
MCO07G478 Micromonas commoda HOM05D006050 ORTHO05D007457 1.4e-46 191.0 307 41.4
Pp3c6_19460 Physcomitrium patens HOM05D006050 ORTHO05D007457 6.1e-42 175.6 131 62.6
SEGI_20862 Sequoiadendron giganteum HOM05D006050 ORTHO05D007457 2.5e-40 170.2 123 69.9
DCAR_029765 Daucus carota HOM05D006050 ORTHO05D007457 4.1e-38 162.9 173 53.8
Cpa.g.sc166.18 Carica papaya HOM05D006050 ORTHO05D007457 3.4e-37 159.8 107 76.6
MBI10_g02215_MAGBIO Magnolia biondii HOM05D006050 ORTHO05D007457 2.2e-36 157.1 131 58.0
AUR62030211 Chenopodium quinoa HOM05D006050 ORTHO05D007457 7.2e-35 152.1 193 47.2
Mapoly0042s0029 Marchantia polymorpha HOM05D006050 ORTHO05D007457 3.0e-33 146.7 131 57.3
COL.COLO4_31087 Corchorus olitorius HOM05D006050 ORTHO05D007457 1.7e-31 141.0 129 53.5
Prupe.4G079600 Prunus persica HOM05D006050 ORTHO05D007457 2.2e-31 140.6 129 55.0
PGSC0003DMG402021159 Solanum tuberosum HOM05D006050 ORTHO05D007457 1.5e-29 134.4 131 51.1
AUR62030212 Chenopodium quinoa HOM05D006050 ORTHO05D007457 2.2e-28 130.6 144 51.4
Carub.0007s2300 Capsella rubella HOM05D006050 ORTHO05D007457 5.0e-28 129.4 135 48.1
Gohir.D10G040800 Gossypium hirsutum HOM05D006050 ORTHO05D007457 8.5e-28 128.6 129 52.7
Gohir.A10G040000 Gossypium hirsutum HOM05D006050 ORTHO05D007457 1.1e-27 128.3 129 52.7
Glyma.13G217500 Glycine max HOM05D006050 ORTHO05D007457 3.0e-25 120.2 129 48.1
PSO063G2775 Papaver somniferum HOM05D006050 ORTHO05D007457 3.0e-25 120.2 110 60.0
Lalb_Chr18g0055521 Lupinus albus HOM05D006050 ORTHO05D007457 3.3e-24 116.7 129 45.0
FAN11G0378 Fragaria x ananassa HOM05D006050 ORTHO05D007457 5.7e-24 115.9 100 61.0
CSS0017405 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 1.1e-22 111.7 69 79.7
Sopen02g019650 Solanum pennellii HOM05D006050 ORTHO05D007457 5.3e-22 109.4 102 53.9
Zm00001eb120180 Zea mays HOM05D006050 ORTHO05D007457 1.3e-20 104.8 134 41.0
TPR.G28611 Trifolium pratense HOM05D004989 ORTHO05D006739 1.1e-19 101.7 119 41.2
CARHR225070 Cardamine hirsuta HOM05D006050 ORTHO05D007457 5.5e-19 99.4 112 50.0
CSS0043541 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 3.6e-18 96.7 62 75.8
DCAR_011844 Daucus carota HOM05D006050 ORTHO05D007457 5.2e-17 92.8 90 54.4
COL.COLO4_31088 Corchorus olitorius HOM05D006050 ORTHO05D007457 1.6e-10 71.2 61 62.3
unitig_32.g11518 Utricularia gibba HOM05D006050 ORTHO05D007457 6.8e-09 65.9 97 37.1
CSS0030855 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 2.4e-06 57.4 45 62.2
CSS0036908 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 2.4e-06 57.4 45 62.2


User provided reference genes

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