Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO239G0145 Selaginella moellendorffii HOM05D004597 ORTHO05D005629 8.9e-107 390.2 186 100.0
Lalb_Chr13g0299251 Lupinus albus HOM05D004597 ORTHO05D005629 6.7e-54 214.5 150 60.0
Lalb_Chr13g0299261 Lupinus albus HOM05D004597 ORTHO05D005629 1.1e-53 213.8 179 54.7
Lj4g0020079 Lotus japonicus HOM05D004597 ORTHO05D005629 1.5e-53 213.4 178 54.5
Solyc07g042440.3 Solanum lycopersicum HOM05D004597 ORTHO05D005629 1.5e-53 213.4 178 53.4
PGSC0003DMG400013551 Solanum tuberosum HOM05D004597 ORTHO05D005629 1.5e-53 213.4 178 53.4
Sopen07g022070 Solanum pennellii HOM05D004597 ORTHO05D005629 2.0e-53 213.0 178 53.4
EL10Ac8g18994 Beta vulgaris HOM05D004597 ORTHO05D005629 2.6e-53 212.6 181 54.1
SEGI_12051 Sequoiadendron giganteum HOM05D004597 ORTHO05D005629 4.4e-53 211.8 150 60.7
arahy.Tifrunner.gnm1.ann1.4N6INR Arachis hypogaea HOM05D004597 ORTHO05D005629 7.4e-53 211.1 180 53.9
arahy.Tifrunner.gnm1.ann1.4YLW35 Arachis hypogaea HOM05D004597 ORTHO05D005629 7.4e-53 211.1 180 53.9
AUR62028306 Chenopodium quinoa HOM05D004597 ORTHO05D005629 1.3e-52 210.3 176 53.4
Psat4g018640 Pisum sativum HOM05D004597 ORTHO05D005629 1.3e-52 210.3 177 52.5
CAN.G210.7 Capsicum annuum HOM05D004597 ORTHO05D005629 1.7e-52 209.9 162 55.6
Nitab4.5_0001699g0010 Nicotiana tabacum HOM05D004597 ORTHO05D005629 3.7e-52 208.8 182 52.7
MSTRG.26494 Avicennia marina HOM05D004597 ORTHO05D005629 6.3e-52 208.0 181 51.9
Medtr4g124790 Medicago truncatula HOM05D004597 ORTHO05D005629 6.3e-52 208.0 180 52.2
Nitab4.5_0007540g0030 Nicotiana tabacum HOM05D004597 ORTHO05D005629 8.2e-52 207.6 180 52.8
GSVIVG01015027001 Vitis vinifera HOM05D004597 ORTHO05D005629 8.2e-52 207.6 178 52.2
Hund08871 Selenicereus undatus HOM05D004597 ORTHO05D005629 1.4e-51 206.8 181 53.0
Ca_21333_v3 Cicer arietinum L. HOM05D004597 ORTHO05D005629 2.4e-51 206.1 150 58.0
Ca_30964_v3 Cicer arietinum L. HOM05D004597 ORTHO05D005629 2.4e-51 206.1 150 58.0
Eucgr.C00774 Eucalyptus grandis HOM05D004597 ORTHO05D005629 2.4e-51 206.1 179 52.0
Oeu028117.1 Olea europaea HOM05D004597 ORTHO05D005629 2.4e-51 206.1 150 59.3
Atru.chr7.1756 Acer truncatum HOM05D004597 ORTHO05D005629 4.1e-51 205.3 180 51.7
Cpa.g.sc82.76 Carica papaya HOM05D004597 ORTHO05D005629 7.0e-51 204.5 150 59.3
AUR62025300 Chenopodium quinoa HOM05D004597 ORTHO05D005629 9.1e-51 204.1 149 57.7
Migut.J00892 Erythranthe guttata HOM05D004597 ORTHO05D005629 1.2e-50 203.8 151 58.9
Peaxi162Scf00191g00102 Petunia axillaris HOM05D004597 ORTHO05D005629 1.2e-50 203.8 151 57.0
ATR0681G150 Amborella trichopoda HOM05D004597 ORTHO05D005629 1.5e-50 203.4 150 59.3
SGA_v2.0_scaffold281G46915 Striga asiatica HOM05D004597 ORTHO05D005629 1.5e-50 203.4 164 53.0
Duzib150G0058 Durio zibethinus HOM05D004597 ORTHO05D005629 2.0e-50 203.0 179 52.5
Manes.16G091900 Manihot esculenta HOM05D004597 ORTHO05D005629 2.0e-50 203.0 177 52.0
SalBow6G0240 Salvia bowleyana HOM05D004597 ORTHO05D005629 2.0e-50 203.0 159 55.3
SMO146G0055 Selaginella moellendorffii HOM05D004597 ORTHO05D005629 2.6e-50 202.6 149 59.1
Ciclev10009453m.g Citrus clementina HOM05D004597 ORTHO05D005629 3.5e-50 202.2 180 50.6
Gohir.D08G267800 Gossypium hirsutum HOM05D004597 ORTHO05D005629 3.5e-50 202.2 150 56.7
THA.LOC104815073 Tarenaya hassleriana HOM05D004597 ORTHO05D005629 3.5e-50 202.2 177 51.4
arahy.Tifrunner.gnm1.ann1.2G0Z8B Arachis hypogaea HOM05D004597 ORTHO05D005629 4.5e-50 201.8 150 56.0
Gohir.A08G246600 Gossypium hirsutum HOM05D004597 ORTHO05D005629 5.9e-50 201.4 150 56.7
Phvul.003G128266 Phaseolus vulgaris HOM05D004597 ORTHO05D005629 5.9e-50 201.4 150 57.3
Potri.006G137500 Populus trichocarpa HOM05D004597 ORTHO05D005629 5.9e-50 201.4 150 56.0
Sabra06G0107600 Salix brachista HOM05D004597 ORTHO05D005629 5.9e-50 201.4 150 56.7
Glyma.17G046500 Glycine max HOM05D004597 ORTHO05D005629 7.7e-50 201.1 177 51.4
VMungo1215G0896 Vigna mungo HOM05D004597 ORTHO05D005629 7.7e-50 201.1 150 56.7
arahy.Tifrunner.gnm1.ann1.SJ1504 Arachis hypogaea HOM05D004597 ORTHO05D005629 1.0e-49 200.7 150 56.0
CANSAT56G1179 Cannabis sativa HOM05D004597 ORTHO05D005629 1.0e-49 200.7 150 56.0
COL.COLO4_21219 Corchorus olitorius HOM05D004597 ORTHO05D005629 1.0e-49 200.7 150 56.7
Oeu055329.1 Olea europaea HOM05D004597 ORTHO05D005629 1.0e-49 200.7 150 58.0
TWI32G1285 Tripterygium wilfordii HOM05D004597 ORTHO05D005629 1.0e-49 200.7 150 56.0
CsaV3_6G002530 Cucumis sativus L. HOM05D004597 ORTHO05D005629 1.3e-49 200.3 155 54.8
Lsat_1_v5_gn_5_139160 Lactuca sativa HOM05D004597 ORTHO05D005629 1.3e-49 200.3 150 56.7
Sed0000155 Sechium edule HOM05D004597 ORTHO05D005629 1.3e-49 200.3 179 50.3
ECA234G4331 Erigeron canadensis HOM05D004597 ORTHO05D005629 2.2e-49 199.5 175 49.7
Glyma.13G113200 Glycine max HOM05D004597 ORTHO05D005629 2.2e-49 199.5 178 51.1
Sc18g0002790 Simmondsia chinensis HOM05D004597 ORTHO05D005629 2.2e-49 199.5 178 51.7
Aa31LG4G13040 Aethionema arabicum HOM05D004597 ORTHO05D005629 2.9e-49 199.1 181 49.7
CDE11G0438 Ceratophyllum demersum HOM05D004597 ORTHO05D005629 2.9e-49 199.1 155 56.1
CDE05G1003 Ceratophyllum demersum HOM05D004597 ORTHO05D005629 3.8e-49 198.7 155 56.1
ClCG08G002020 Citrullus lanatus HOM05D004597 ORTHO05D005629 3.8e-49 198.7 155 54.2
Os06g0196300 Oryza sativa ssp. japonica HOM05D004597 ORTHO05D005629 3.8e-49 198.7 149 56.4
PSO104G0043 Papaver somniferum HOM05D004597 ORTHO05D005629 3.8e-49 198.7 181 49.2
Ah.09g229020 Amaranthus hybridus HOM05D004597 ORTHO05D005629 5.0e-49 198.4 162 54.9
Haze_26057 Corylus avellana HOM05D004597 ORTHO05D005629 5.0e-49 198.4 150 57.3
MSTRG.19433 Avicennia marina HOM05D004597 ORTHO05D005629 6.5e-49 198.0 150 55.3
CiPaw.03G201900 Carya illinoinensis HOM05D004597 ORTHO05D005629 6.5e-49 198.0 150 56.0
Nn6g35647 Nelumbo nucifera HOM05D004597 ORTHO05D005629 6.5e-49 198.0 150 56.0
Peaxi162Scf00418g00113 Petunia axillaris HOM05D004597 ORTHO05D005629 6.5e-49 198.0 150 55.3
Sed0006126 Sechium edule HOM05D004597 ORTHO05D005629 6.5e-49 198.0 178 50.6
CARHR147050 Cardamine hirsuta HOM05D004597 ORTHO05D005629 8.5e-49 197.6 148 55.4
Cc06_g12610 Coffea canephora HOM05D004597 ORTHO05D005629 8.5e-49 197.6 175 49.7
MD02G1099800 Malus domestica HOM05D004597 ORTHO05D005629 8.5e-49 197.6 150 55.3
HPP92_019114 Vanilla planifolia HOM05D004597 ORTHO05D005629 1.1e-48 197.2 149 56.4
Dinv25516 Davidia involucrata HOM05D004597 ORTHO05D005629 1.4e-48 196.8 150 55.3
Nitab4.5_0000400g0030 Nicotiana tabacum HOM05D004597 ORTHO05D005629 1.4e-48 196.8 175 49.7
MD15G1222600 Malus domestica HOM05D004597 ORTHO05D005629 1.9e-48 196.4 150 54.7
Sabra18G0056100 Salix brachista HOM05D004597 ORTHO05D005629 1.9e-48 196.4 150 55.3
Thecc.09G071400 Theobroma cacao HOM05D004597 ORTHO05D005629 1.9e-48 196.4 150 55.3
Zm00001eb278510 Zea mays HOM05D004597 ORTHO05D005629 1.9e-48 196.4 166 53.6
BcaB02g10783 Brassica carinata HOM05D004597 ORTHO05D005629 2.5e-48 196.1 178 48.9
CSS0048779 Camellia sinensis var. sinensis HOM05D004597 ORTHO05D005629 2.5e-48 196.1 150 54.7
Cfa002950 Carpinus fangiana HOM05D004597 ORTHO05D005629 2.5e-48 196.1 150 56.7
Lj4A919T43 Lonicera japonica HOM05D004597 ORTHO05D005629 2.5e-48 196.1 151 55.0
Potri.018G063300 Populus trichocarpa HOM05D004597 ORTHO05D005629 2.5e-48 196.1 150 54.7
Prupe.7G193200 Prunus persica HOM05D004597 ORTHO05D005629 3.2e-48 195.7 156 52.6
Aqoxy7G00987 Aquilegia oxysepala HOM05D004597 ORTHO05D005629 4.2e-48 195.3 150 54.0
Mapoly0033s0151 Marchantia polymorpha HOM05D004597 ORTHO05D005629 4.2e-48 195.3 178 50.6
Rhsim08G0029700 Rhododendron simsii HOM05D004597 ORTHO05D005629 5.5e-48 194.9 150 54.7
CSS0005573 Camellia sinensis var. sinensis HOM05D004597 ORTHO05D005629 7.2e-48 194.5 141 57.4
DCAR_024773 Daucus carota HOM05D004597 ORTHO05D005629 7.2e-48 194.5 150 54.7
Thhalv10021501m.g Eutrema salsugineum HOM05D004597 ORTHO05D005629 7.2e-48 194.5 148 54.1
PGR119G0607 Punica granatum HOM05D004597 ORTHO05D005629 7.2e-48 194.5 150 54.7
PSO421G0191 Papaver somniferum HOM05D004597 ORTHO05D005629 9.4e-48 194.1 180 50.0
vmacro17088 Vaccinium macrocarpon HOM05D004597 ORTHO05D005629 9.4e-48 194.1 150 54.7
FvH4_1g09250 Fragaria vesca HOM05D004597 ORTHO05D005629 1.2e-47 193.7 177 48.6
FAN19G2435 Fragaria x ananassa HOM05D004597 ORTHO05D005629 1.2e-47 193.7 177 48.6
HanXRQChr12g0354281 Helianthus annuus HOM05D004597 ORTHO05D005629 1.2e-47 193.7 181 49.7
RcHm_v2.0_Chr2g0095781 Rosa chinensis HOM05D004597 ORTHO05D005629 1.2e-47 193.7 177 49.2
FAN26G0325 Fragaria x ananassa HOM05D004597 ORTHO05D005629 1.6e-47 193.4 177 48.0
FAN26G3440 Fragaria x ananassa HOM05D004597 ORTHO05D005629 1.6e-47 193.4 177 48.0
QL11p002680 Quercus lobata HOM05D004597 ORTHO05D005629 1.6e-47 193.4 181 48.1
Rhsim08G0029600 Rhododendron simsii HOM05D004597 ORTHO05D005629 1.6e-47 193.4 150 54.7
Nitab4.5_0001092g0070 Nicotiana tabacum HOM05D004597 ORTHO05D005629 2.7e-47 192.6 150 53.3
FAN23G2914 Fragaria x ananassa HOM05D004597 ORTHO05D005629 4.7e-47 191.8 177 48.0
Pp3c2_15400 Physcomitrium patens HOM05D004597 ORTHO05D005629 6.1e-47 191.4 150 55.3
PSO421G0482 Papaver somniferum HOM05D004597 ORTHO05D005629 1.0e-46 190.7 181 48.1
BcaC01g02171 Brassica carinata HOM05D004597 ORTHO05D005629 3.0e-46 189.1 178 47.8
A06p23440 Brassica napus HOM05D004597 ORTHO05D005629 3.0e-46 189.1 178 47.8
C03p67930 Brassica napus HOM05D004597 ORTHO05D005629 3.0e-46 189.1 178 47.8
AT3G26060 Arabidopsis thaliana HOM05D004597 ORTHO05D005629 6.7e-46 188.0 148 53.4
Carub.0005s0392 Capsella rubella HOM05D004597 ORTHO05D005629 6.7e-46 188.0 148 53.4
Sp5g18690 Schrenkiella parvula HOM05D004597 ORTHO05D005629 8.8e-46 187.6 148 52.7
AL5G14740 Arabidopsis lyrata HOM05D004597 ORTHO05D005629 2.0e-45 186.4 148 52.7
Pp3c25_1840 Physcomitrium patens HOM05D004597 ORTHO05D005629 2.0e-45 186.4 150 48.7
DCAR_011918 Daucus carota HOM05D004597 ORTHO05D005629 2.6e-45 186.0 157 51.0
BolC3t19018H Brassica oleracea HOM05D004597 ORTHO05D005629 3.3e-45 185.7 179 46.4
BraA06t25436Z Brassica rapa HOM05D004597 ORTHO05D005629 3.3e-45 185.7 179 46.4
MELO3C025034.2 Cucumis melo HOM05D004597 ORTHO05D005629 6.3e-44 181.4 191 44.0
FAN28G1763 Fragaria x ananassa HOM05D004597 ORTHO05D005629 5.3e-43 178.3 202 42.1
Hund26094 Selenicereus undatus HOM05D004597 ORTHO05D005629 1.1e-40 170.6 127 58.3
PRCOL_00006100 Prasinoderma coloniale HOM05D004597 ORTHO05D005629 1.8e-35 153.3 150 48.0
Lsat_1_v5_gn_7_82541 Lactuca sativa HOM05D004597 ORTHO05D005629 7.0e-35 151.4 117 57.3
Lsat_1_v5_gn_3_58180 Lactuca sativa HOM05D004597 ORTHO05D005629 2.2e-33 146.4 120 55.0
Cre10.g422300 Chlamydomonas reinhardtii HOM05D004597 ORTHO05D005629 4.2e-32 142.1 169 43.8
THA.LOC104815153 Tarenaya hassleriana HOM05D004597 ORTHO05D005629 5.5e-32 141.7 163 38.7
Hma1.2p1_0169F.1_g074350 Hydrangea macrophylla HOM05D004597 ORTHO05D005629 7.2e-32 141.4 151 42.4
CBR_g31073 Chara braunii HOM05D004597 ORTHO05D000002 8.0e-31 137.9 101 57.4
Actinidia30251 Actinidia chinensis HOM05D004597 ORTHO05D005629 2.3e-30 136.3 173 43.4
vmacro17087 Vaccinium macrocarpon HOM05D004597 ORTHO05D005629 8.8e-30 134.4 104 52.9
Lsat_1_v5_gn_6_72620 Lactuca sativa HOM05D004597 ORTHO05D005629 2.4e-27 126.3 107 55.1
TPR.G12546 Trifolium pratense HOM05D004597 ORTHO05D005629 1.6e-26 123.6 114 54.4
Gorai.004G285400 Gossypium raimondii HOM05D004597 ORTHO05D005629 1.2e-23 114.0 78 64.1
Pp3c10_380 Physcomitrium patens HOM05D004597 ORTHO05D005629 2.8e-23 112.8 79 62.0
Dinv42426 Davidia involucrata HOM05D004597 ORTHO05D005629 1.0e-22 110.9 78 62.8
QL11p002688 Quercus lobata HOM05D004597 ORTHO05D005629 5.2e-22 108.6 78 61.5
Ca_28838_v3 Cicer arietinum L. HOM05D004597 ORTHO05D005629 5.7e-21 105.1 152 37.5
Prupe.1G206600 Prunus persica HOM05D004597 ORTHO05D005629 1.8e-19 100.1 156 32.7
QL11p002682 Quercus lobata HOM05D004597 ORTHO05D005629 2.5e-16 89.7 71 46.5
Prupe.3G139200 Prunus persica HOM05D004597 ORTHO05D005629 6.1e-15 85.1 128 34.4
PRCOL_00007099 Prasinoderma coloniale HOM05D004597 ORTHO05D005629 8.0e-15 84.7 160 31.2
Cfa022044 Carpinus fangiana HOM05D004597 ORTHO05D005629 4.0e-14 82.4 93 39.8
MCO10G030 Micromonas commoda HOM05D003127 ORTHO05D003709 8.9e-14 81.3 156 30.8
MCO02G383 Micromonas commoda HOM05D004597 ORTHO05D005629 1.2e-13 80.9 131 35.9
Lsat_1_v5_gn_5_125061 Lactuca sativa HOM05D004597 ORTHO05D005629 1.5e-13 80.5 90 45.6
TPR.G7463 Trifolium pratense HOM05D004597 ORTHO05D005629 7.5e-13 78.2 102 39.2
PRCOL_00002734 Prasinoderma coloniale HOM05D003127 ORTHO05D003709 3.7e-12 75.9 162 31.5
TPR.G24405 Trifolium pratense HOM05D004597 ORTHO05D005629 1.4e-11 73.9 73 52.1
Cre17.g743897 Chlamydomonas reinhardtii HOM05D003127 ORTHO05D003709 2.4e-11 73.2 162 27.8
AagrBONN_evm.TU.Sc2ySwM_344.1889 Anthoceros agrestis HOM05D004597 ORTHO05D005629 7.8e-10 68.2 51 52.9
Haze_27581 Corylus avellana HOM05D003127 ORTHO05D003709 1.0e-09 67.8 134 26.9
MELO3C030723.2 Cucumis melo HOM05D004597 ORTHO05D005629 3.0e-09 66.2 87 37.9
CARHR207030 Cardamine hirsuta HOM05D003127 ORTHO05D003709 8.6e-09 64.7 164 26.8
Cre02.g114600 Chlamydomonas reinhardtii HOM05D003127 ORTHO05D003709 8.6e-09 64.7 136 29.4
Os07g0638300 Oryza sativa ssp. japonica HOM05D005985 ORTHO05D007403 1.5e-08 63.9 158 26.6
Zm00001eb328770 Zea mays HOM05D005985 ORTHO05D007403 7.3e-08 61.6 138 28.3
Haze_27547 Corylus avellana HOM05D003127 ORTHO05D003709 9.5e-08 61.2 135 29.6
vmacro17086 Vaccinium macrocarpon HOM05D004597 ORTHO05D005629 2.1e-07 60.1 48 50.0
VMungo0251G0059 Vigna mungo HOM05D005985 ORTHO05D007403 2.1e-07 60.1 162 24.1
unitig_22.g6577 Utricularia gibba HOM05D004597 ORTHO05D005629 2.8e-07 59.7 45 53.3
AUR62029991 Chenopodium quinoa HOM05D005985 ORTHO05D007403 3.6e-07 59.3 163 24.5
THA.LOC104821806 Tarenaya hassleriana HOM05D005985 ORTHO05D007403 3.6e-07 59.3 159 23.3
Aqoxy2G02563 Aquilegia oxysepala HOM05D005985 ORTHO05D007403 4.7e-07 58.9 163 23.9
Sc24g0001290 Simmondsia chinensis HOM05D005985 ORTHO05D007403 6.2e-07 58.5 169 24.3
AUR62002570 Chenopodium quinoa HOM05D005985 ORTHO05D007403 8.0e-07 58.2 162 22.8
QL06p013713 Quercus lobata HOM05D005985 ORTHO05D007403 1.8e-06 57.0 132 24.2
TPR.G31247 Trifolium pratense HOM05D005985 ORTHO05D007403 1.8e-06 57.0 131 25.2
MBI18_g28902_MAGBIO Magnolia biondii HOM05D005985 ORTHO05D007403 2.3e-06 56.6 133 24.1
Duzib212G0534 Durio zibethinus HOM05D005985 ORTHO05D007403 3.1e-06 56.2 163 23.3
Medtr4g094720 Medicago truncatula HOM05D005985 ORTHO05D007403 3.1e-06 56.2 131 25.2
Os07g0638400 Oryza sativa ssp. japonica HOM05D005985 ORTHO05D007403 3.1e-06 56.2 157 26.1
TWI09G1588 Tripterygium wilfordii HOM05D005985 ORTHO05D007403 3.1e-06 56.2 130 24.6
ATR0796G055 Amborella trichopoda HOM05D005985 ORTHO05D007403 6.8e-06 55.1 130 24.6
Ca_18238_v3 Cicer arietinum L. HOM05D005985 ORTHO05D007403 6.8e-06 55.1 131 24.4
Duzib128G0500 Durio zibethinus HOM05D005985 ORTHO05D007403 6.8e-06 55.1 162 21.6
Duzib128G2054 Durio zibethinus HOM05D005985 ORTHO05D007403 6.8e-06 55.1 162 21.6
SalBow8G2871 Salvia bowleyana HOM05D005985 ORTHO05D007403 6.8e-06 55.1 163 22.7
Psat7g085840 Pisum sativum HOM05D005985 ORTHO05D007403 8.9e-06 54.7 131 25.2


User provided reference genes

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