Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO239G0063 Selaginella moellendorffii HOM05D005690 ORTHO05D007075 2.2e-91 339.0 171 100.0
Pp3c10_15170 Physcomitrium patens HOM05D005690 ORTHO05D007075 2.1e-38 162.9 170 48.8
Mapoly0033s0041 Marchantia polymorpha HOM05D005690 ORTHO05D007075 1.4e-37 160.2 141 52.5
AagrBONN_evm.TU.Sc2ySwM_362.1612 Anthoceros agrestis HOM05D005690 ORTHO05D007075 3.1e-37 159.1 150 52.0
Mapoly0033s0042 Marchantia polymorpha HOM05D005690 ORTHO05D007075 2.7e-33 146.0 146 50.0
SEGI_15078 Sequoiadendron giganteum HOM05D005690 ORTHO05D007075 3.5e-33 145.6 143 47.6
FvH4_7g20020 Fragaria vesca HOM05D005690 ORTHO05D007075 2.5e-31 139.4 178 39.9
FAN03G1698 Fragaria x ananassa HOM05D005690 ORTHO05D007075 2.5e-31 139.4 178 39.9
FAN06G0212 Fragaria x ananassa HOM05D005690 ORTHO05D007075 2.5e-31 139.4 178 39.9
FAN01G0973 Fragaria x ananassa HOM05D005690 ORTHO05D007075 3.3e-31 139.0 178 39.9
FAN10G0816 Fragaria x ananassa HOM05D005690 ORTHO05D007075 3.3e-31 139.0 178 39.9
MELO3C002879.2 Cucumis melo HOM05D005690 ORTHO05D007075 4.3e-31 138.7 174 39.7
Os03g0853800 Oryza sativa ssp. japonica HOM05D005690 ORTHO05D007075 5.6e-31 138.3 158 41.1
CsaV3_5G025890 Cucumis sativus L. HOM05D005690 ORTHO05D007075 7.3e-31 137.9 176 38.1
RcHm_v2.0_Chr1g0363981 Rosa chinensis HOM05D005690 ORTHO05D007075 7.3e-31 137.9 178 39.9
Eucgr.J01110 Eucalyptus grandis HOM05D005690 ORTHO05D007075 1.6e-30 136.7 174 40.2
VMungo0464G0948 Vigna mungo HOM05D005690 ORTHO05D007075 2.1e-30 136.3 176 39.2
Zm00001eb064810 Zea mays HOM05D005690 ORTHO05D007075 2.8e-30 136.0 143 41.3
Atru.chr12.697 Acer truncatum HOM05D005690 ORTHO05D007075 6.2e-30 134.8 174 37.9
Cfa001602 Carpinus fangiana HOM05D005690 ORTHO05D007075 6.2e-30 134.8 176 38.1
Glyma.17G183500 Glycine max HOM05D005690 ORTHO05D007075 6.2e-30 134.8 175 40.0
TAR636G2049 Trochodendron aralioides HOM05D005690 ORTHO05D007075 6.2e-30 134.8 175 38.3
ATR1159G074 Amborella trichopoda HOM05D005690 ORTHO05D007075 8.1e-30 134.4 143 42.7
MD01G1111700 Malus domestica HOM05D005690 ORTHO05D007075 8.1e-30 134.4 179 39.7
MD07G1177900 Malus domestica HOM05D005690 ORTHO05D007075 8.1e-30 134.4 178 38.8
HPP92_003607 Vanilla planifolia HOM05D005690 ORTHO05D007075 8.1e-30 134.4 178 41.6
GSVIVG01016316001 Vitis vinifera HOM05D005690 ORTHO05D007075 8.1e-30 134.4 176 37.5
Dinv11797 Davidia involucrata HOM05D005690 ORTHO05D007075 1.1e-29 134.0 176 37.5
CANSAT56G3535 Cannabis sativa HOM05D005690 ORTHO05D007075 1.4e-29 133.7 175 39.4
CiPaw.02G175700 Carya illinoinensis HOM05D005690 ORTHO05D007075 1.4e-29 133.7 176 38.1
Gohir.D06G176800 Gossypium hirsutum HOM05D005690 ORTHO05D007075 1.4e-29 133.7 178 37.1
Gorai.010G204700 Gossypium raimondii HOM05D005690 ORTHO05D007075 1.4e-29 133.7 178 37.1
Prupe.2G217200 Prunus persica HOM05D005690 ORTHO05D007075 1.4e-29 133.7 178 38.8
Atru.chr12.670 Acer truncatum HOM05D005690 ORTHO05D007075 2.4e-29 132.9 174 37.4
QL08p056659 Quercus lobata HOM05D005690 ORTHO05D007075 2.4e-29 132.9 172 37.2
Sed0011214 Sechium edule HOM05D005690 ORTHO05D007075 2.4e-29 132.9 174 36.2
TPR.G36634 Trifolium pratense HOM05D005690 ORTHO05D007075 2.4e-29 132.9 176 37.5
Manes.07G103000 Manihot esculenta HOM05D005690 ORTHO05D007075 3.1e-29 132.5 177 37.3
Thecc.10G069500 Theobroma cacao HOM05D005690 ORTHO05D007075 3.1e-29 132.5 176 35.8
COL.COLO4_32034 Corchorus olitorius HOM05D005690 ORTHO05D007075 4.0e-29 132.1 176 36.4
Nn2g13015 Nelumbo nucifera HOM05D005690 ORTHO05D007075 4.0e-29 132.1 175 36.6
SalBow4G1295 Salvia bowleyana HOM05D005690 ORTHO05D007075 4.0e-29 132.1 176 36.9
Cc02_g11390 Coffea canephora HOM05D005690 ORTHO05D007075 5.3e-29 131.7 143 42.0
Duzib114G0556 Durio zibethinus HOM05D005690 ORTHO05D007075 5.3e-29 131.7 178 36.5
MBI05_g11579_MAGBIO Magnolia biondii HOM05D005690 ORTHO05D007075 5.3e-29 131.7 179 36.3
THA.LOC104802837 Tarenaya hassleriana HOM05D005690 ORTHO05D007075 5.3e-29 131.7 179 38.5
Peaxi162Scf00108g00166 Petunia axillaris HOM05D005690 ORTHO05D007075 6.9e-29 131.3 143 40.6
SGA_v2.0_scaffold28G12052 Striga asiatica HOM05D005690 ORTHO05D007075 6.9e-29 131.3 146 39.7
TAR633G2147 Trochodendron aralioides HOM05D005690 ORTHO05D007075 6.9e-29 131.3 179 37.4
Carub.0004s1755 Capsella rubella HOM05D005690 ORTHO05D007075 9.0e-29 131.0 172 39.5
Eucgr.J01111 Eucalyptus grandis HOM05D005690 ORTHO05D007075 9.0e-29 131.0 176 37.5
Gohir.A06G178200 Gossypium hirsutum HOM05D005690 ORTHO05D007075 9.0e-29 131.0 178 36.5
Phvul.004G075000 Phaseolus vulgaris HOM05D005690 ORTHO05D007075 9.0e-29 131.0 176 38.1
Sabra08G0029500 Salix brachista HOM05D005690 ORTHO05D007075 1.2e-28 130.6 177 36.7
Nitab4.5_0000233g0230 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.5e-28 130.2 143 39.9
Nitab4.5_0012288g0020 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.5e-28 130.2 143 39.9
ECA232G2854 Erigeron canadensis HOM05D005690 ORTHO05D007075 2.0e-28 129.8 174 37.4
MSTRG.373 Avicennia marina HOM05D005690 ORTHO05D007075 2.6e-28 129.4 143 39.2
CARHR130040 Cardamine hirsuta HOM05D005690 ORTHO05D007075 2.6e-28 129.4 174 39.1
ClCG09G020510 Citrullus lanatus HOM05D005690 ORTHO05D007075 3.4e-28 129.0 161 37.3
Hma1.2p1_0453F.1_g156020 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 3.4e-28 129.0 173 37.6
Hma1.2p1_2080F.1_g313490 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 3.4e-28 129.0 173 37.6
Peaxi162Scf01175g00023 Petunia axillaris HOM05D005690 ORTHO05D007075 3.4e-28 129.0 175 38.3
Ca_04676_v3 Cicer arietinum L. HOM05D005690 ORTHO05D007075 4.5e-28 128.6 177 36.2
Lj2g0014971 Lotus japonicus HOM05D005690 ORTHO05D007075 4.5e-28 128.6 176 35.8
AL4G31900 Arabidopsis lyrata HOM05D005690 ORTHO05D007075 5.8e-28 128.3 172 39.5
Ciclev10032614m.g Citrus clementina HOM05D005690 ORTHO05D007075 5.8e-28 128.3 175 36.6
Haze_16926 Corylus avellana HOM05D005690 ORTHO05D007075 5.8e-28 128.3 143 39.2
C04p64770 Brassica napus HOM05D005690 ORTHO05D007075 7.6e-28 127.9 168 36.9
Sabra10G0169300 Salix brachista HOM05D005690 ORTHO05D007075 7.6e-28 127.9 177 36.7
TWI38G1302 Tripterygium wilfordii HOM05D005690 ORTHO05D007075 7.6e-28 127.9 176 35.8
BolC4t27955H Brassica oleracea HOM05D005690 ORTHO05D007075 9.9e-28 127.5 168 37.5
Nitab4.5_0000476g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 9.9e-28 127.5 143 39.9
HanXRQChr09g0246501 Helianthus annuus HOM05D005690 ORTHO05D007075 1.3e-27 127.1 174 37.4
HanXRQChr17g0563371 Helianthus annuus HOM05D005690 ORTHO05D007075 1.3e-27 127.1 174 37.4
unitig_0.g529 Utricularia gibba HOM05D005690 ORTHO05D007075 1.3e-27 127.1 174 35.1
Thhalv10017166m.g Eutrema salsugineum HOM05D005690 ORTHO05D007075 2.2e-27 126.3 175 38.9
Nitab4.5_0009003g0010 Nicotiana tabacum HOM05D005690 ORTHO05D007075 2.2e-27 126.3 176 36.4
SalBow3G1299 Salvia bowleyana HOM05D005690 ORTHO05D007075 2.2e-27 126.3 140 39.3
CAN.G694.84 Capsicum annuum HOM05D005690 ORTHO05D007075 2.9e-27 125.9 143 39.9
PGR044G2452 Punica granatum HOM05D005690 ORTHO05D007075 2.9e-27 125.9 177 35.0
Solyc05g056090.3 Solanum lycopersicum HOM05D005690 ORTHO05D007075 2.9e-27 125.9 179 37.4
Sopen05g034500 Solanum pennellii HOM05D005690 ORTHO05D007075 2.9e-27 125.9 179 37.4
AT2G35790 Arabidopsis thaliana HOM05D005690 ORTHO05D007075 3.8e-27 125.6 172 39.0
arahy.Tifrunner.gnm1.ann1.08HL34 Arachis hypogaea HOM05D005690 ORTHO05D007075 3.8e-27 125.6 176 35.2
arahy.Tifrunner.gnm1.ann1.8E9GH8 Arachis hypogaea HOM05D005690 ORTHO05D007075 3.8e-27 125.6 176 35.2
Medtr6g033405 Medicago truncatula HOM05D005690 ORTHO05D007075 3.8e-27 125.6 177 37.9
Rhsim09G0153300 Rhododendron simsii HOM05D005690 ORTHO05D007075 3.8e-27 125.6 176 35.2
Ah.16g108410 Amaranthus hybridus HOM05D005690 ORTHO05D007075 4.9e-27 125.2 179 36.9
Potri.008G042800 Populus trichocarpa HOM05D005690 ORTHO05D007075 4.9e-27 125.2 176 35.2
Rhsim03G0123000 Rhododendron simsii HOM05D005690 ORTHO05D007075 4.9e-27 125.2 178 37.1
Sp4g18050 Schrenkiella parvula HOM05D005690 ORTHO05D007075 6.4e-27 124.8 173 38.2
vmacro04884 Vaccinium macrocarpon HOM05D005690 ORTHO05D007075 6.4e-27 124.8 142 40.1
Hund19342 Selenicereus undatus HOM05D005690 ORTHO05D007075 8.4e-27 124.4 176 36.4
Sed0019941 Sechium edule HOM05D005690 ORTHO05D007075 1.1e-26 124.0 170 36.5
PGSC0003DMG400023460 Solanum tuberosum HOM05D005690 ORTHO05D007075 1.1e-26 124.0 179 36.9
Aa31LG9G7550 Aethionema arabicum HOM05D005690 ORTHO05D007075 1.4e-26 123.6 174 36.2
A04p27260 Brassica napus HOM05D005690 ORTHO05D007075 1.9e-26 123.2 173 36.4
BraA04t18224Z Brassica rapa HOM05D005690 ORTHO05D007075 1.9e-26 123.2 173 36.4
CDE04G0636 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 2.4e-26 122.9 177 36.2
Potri.010G219000 Populus trichocarpa HOM05D005690 ORTHO05D007075 2.4e-26 122.9 177 35.0
Potri.010G219400 Populus trichocarpa HOM05D005690 ORTHO05D007075 2.4e-26 122.9 177 35.0
A03p19730 Brassica napus HOM05D005690 ORTHO05D007075 3.2e-26 122.5 139 40.3
BcaB01g03881 Brassica carinata HOM05D005690 ORTHO05D007075 4.2e-26 122.1 139 39.6
BcaC02g07668 Brassica carinata HOM05D005690 ORTHO05D007075 4.2e-26 122.1 173 37.0
Cpa.g.sc53.43 Carica papaya HOM05D005690 ORTHO05D007075 4.2e-26 122.1 175 36.0
AUR62020766 Chenopodium quinoa HOM05D005690 ORTHO05D007075 4.2e-26 122.1 176 35.8
AUR62027946 Chenopodium quinoa HOM05D005690 ORTHO05D007075 4.2e-26 122.1 176 36.4
Lalb_Chr19g0129571 Lupinus albus HOM05D005690 ORTHO05D007075 5.4e-26 121.7 176 34.1
BcaC01g05707 Brassica carinata HOM05D005690 ORTHO05D007075 9.3e-26 120.9 172 35.5
C03p22980 Brassica napus HOM05D005690 ORTHO05D007075 9.3e-26 120.9 172 35.5
BcaB06g28872 Brassica carinata HOM05D005690 ORTHO05D007075 1.2e-25 120.6 176 36.4
EL10Ac2g03578 Beta vulgaris HOM05D005690 ORTHO05D007075 1.6e-25 120.2 176 35.8
CDE07G1130 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 2.1e-25 119.8 143 39.2
Migut.F01989 Erythranthe guttata HOM05D005690 ORTHO05D007075 3.5e-25 119.0 141 37.6
Lsat_1_v5_gn_9_67140 Lactuca sativa HOM05D005690 ORTHO05D007075 4.6e-25 118.6 141 38.3
PSO384G2564 Papaver somniferum HOM05D005690 ORTHO05D007075 4.6e-25 118.6 176 34.1
PSO339G2382 Papaver somniferum HOM05D005690 ORTHO05D007075 1.3e-24 117.1 176 33.5
Sc06g0001780 Simmondsia chinensis HOM05D005690 ORTHO05D007075 1.9e-23 113.2 108 43.5
Aqoxy6G02013 Aquilegia oxysepala HOM05D005690 ORTHO05D007075 4.3e-23 112.1 142 35.9
Peaxi162Scf00108g00173 Petunia axillaris HOM05D005690 ORTHO05D007075 2.8e-22 109.4 129 39.5
Nitab4.5_0003072g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 8.1e-22 107.8 175 36.0
Lj8C97T4 Lonicera japonica HOM05D005690 ORTHO05D007075 1.1e-21 107.5 108 42.6
BcaB01g03882 Brassica carinata HOM05D005690 ORTHO05D007075 1.4e-18 97.1 97 42.3
Psat1g099440 Pisum sativum HOM05D005690 ORTHO05D007075 6.0e-17 91.7 114 37.7
CiPaw.01G275500 Carya illinoinensis HOM05D005690 ORTHO05D007075 7.9e-17 91.3 124 35.5
CSS0000246 Camellia sinensis var. sinensis HOM05D005690 ORTHO05D007075 2.3e-16 89.7 139 37.4
Cre12.g540051 Chlamydomonas reinhardtii HOM05D005690 ORTHO05D007075 2.5e-15 86.3 142 31.0
MCO03G451 Micromonas commoda HOM05D005690 ORTHO05D007075 4.8e-14 82.0 131 35.9
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 2.1e-09 66.6 75 36.0


User provided reference genes

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