Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO239G0053 Selaginella moellendorffii HOM05D005905 ORTHO05D005996 6.8e-137 490.7 259 100.0
Hund21772 Selenicereus undatus HOM05D005905 ORTHO05D005996 1.6e-21 107.5 177 42.4
PSO017G4395 Papaver somniferum HOM05D005905 ORTHO05D005996 6.1e-21 105.5 170 41.8
Mapoly0015s0082 Marchantia polymorpha HOM05D005905 ORTHO05D005996 8.0e-21 105.1 227 36.6
PSO170G3497 Papaver somniferum HOM05D005905 ORTHO05D005996 4.0e-20 102.8 170 41.2
COL.COLO4_12147 Corchorus olitorius HOM05D005905 ORTHO05D005996 3.4e-19 99.8 187 39.0
Haze_19376 Corylus avellana HOM05D005905 ORTHO05D005996 3.4e-19 99.8 167 40.7
Lsat_1_v5_gn_2_40320 Lactuca sativa HOM05D005905 ORTHO05D005996 3.4e-19 99.8 144 45.1
Lj1g0015901 Lotus japonicus HOM05D005905 ORTHO05D005996 5.7e-19 99.0 174 39.7
Cfa020942 Carpinus fangiana HOM05D005905 ORTHO05D005996 9.8e-19 98.2 169 42.0
arahy.Tifrunner.gnm1.ann1.N289YY Arachis hypogaea HOM05D005905 ORTHO05D005996 1.7e-18 97.4 176 38.6
arahy.Tifrunner.gnm1.ann1.TUTH4E Arachis hypogaea HOM05D005905 ORTHO05D005996 2.2e-18 97.1 177 38.4
Pp3c18_21070 Physcomitrium patens HOM05D005905 ORTHO05D005996 2.2e-18 97.1 189 34.4
Os04g0442100 Oryza sativa ssp. japonica HOM05D005905 ORTHO05D005996 2.8e-18 96.7 170 38.2
AagrBONN_evm.TU.Sc2ySwM_368.3232 Anthoceros agrestis HOM05D005905 ORTHO05D005996 4.8e-18 95.9 320 29.7
SGA_v2.0_scaffold12G06257 Striga asiatica HOM05D005905 ORTHO05D005996 4.8e-18 95.9 179 38.5
CANSAT54G0939 Cannabis sativa HOM05D005905 ORTHO05D005996 6.3e-18 95.5 169 40.2
Gohir.D04G042700 Gossypium hirsutum HOM05D005905 ORTHO05D005996 8.3e-18 95.1 187 38.0
Psat3g100200 Pisum sativum HOM05D005905 ORTHO05D005996 8.3e-18 95.1 173 38.2
SEGI_40650 Sequoiadendron giganteum HOM05D005905 ORTHO05D005996 8.3e-18 95.1 168 37.5
Gorai.012G048200 Gossypium raimondii HOM05D005905 ORTHO05D005996 1.1e-17 94.7 187 38.0
Lalb_Chr19g0126361 Lupinus albus HOM05D005905 ORTHO05D005996 1.1e-17 94.7 181 36.5
Manes.17G045200 Manihot esculenta HOM05D005905 ORTHO05D005996 1.1e-17 94.7 170 38.8
Atru.chr3.1412 Acer truncatum HOM05D005905 ORTHO05D005996 1.4e-17 94.4 179 38.0
Thecc.01G145000 Theobroma cacao HOM05D005905 ORTHO05D005996 1.4e-17 94.4 176 37.5
Ca_08049_v3 Cicer arietinum L. HOM05D005905 ORTHO05D005996 1.8e-17 94.0 175 37.1
Ca_08055_v3 Cicer arietinum L. HOM05D005905 ORTHO05D005996 1.8e-17 94.0 175 37.1
Gohir.A05G372800 Gossypium hirsutum HOM05D005905 ORTHO05D005996 2.4e-17 93.6 187 37.4
Manes.13G155500 Manihot esculenta HOM05D005905 ORTHO05D005996 2.4e-17 93.6 178 39.3
TPR.G29110 Trifolium pratense HOM05D005905 ORTHO05D005996 4.1e-17 92.8 179 38.0
HanXRQChr04g0110551 Helianthus annuus HOM05D005905 ORTHO05D005996 5.4e-17 92.4 163 39.9
CiPaw.15G186200 Carya illinoinensis HOM05D005905 ORTHO05D005996 7.0e-17 92.0 179 36.9
PGR102G2263 Punica granatum HOM05D005905 ORTHO05D005996 7.0e-17 92.0 182 36.8
Eucgr.H05059 Eucalyptus grandis HOM05D005905 ORTHO05D005996 9.1e-17 91.7 179 38.0
Glyma.09G244700 Glycine max HOM05D005905 ORTHO05D005996 9.1e-17 91.7 169 39.1
Lj4A826T50 Lonicera japonica HOM05D005905 ORTHO05D005996 1.6e-16 90.9 177 35.6
SalBow8G4641 Salvia bowleyana HOM05D005905 ORTHO05D005996 1.6e-16 90.9 189 37.0
Sopen05g034710 Solanum pennellii HOM05D005905 ORTHO05D005996 1.6e-16 90.9 174 36.2
MSTRG.23227 Avicennia marina HOM05D005905 ORTHO05D005996 2.7e-16 90.1 178 37.1
AUR62006929 Chenopodium quinoa HOM05D005905 ORTHO05D005996 2.7e-16 90.1 178 34.8
Migut.H02558 Erythranthe guttata HOM05D005905 ORTHO05D005996 2.7e-16 90.1 180 36.7
QL10p035062 Quercus lobata HOM05D005905 ORTHO05D005996 2.7e-16 90.1 178 36.0
RcHm_v2.0_Chr2g0116171 Rosa chinensis HOM05D005905 ORTHO05D005996 2.7e-16 90.1 177 35.0
Hma1.2p1_0213F.1_g090480 Hydrangea macrophylla HOM05D005905 ORTHO05D005996 3.5e-16 89.7 178 36.0
Nn5g27344 Nelumbo nucifera HOM05D005905 ORTHO05D005996 3.5e-16 89.7 215 34.0
VMungo1383G1950 Vigna mungo HOM05D005905 ORTHO05D005996 3.5e-16 89.7 168 39.3
CDE02G2172 Ceratophyllum demersum HOM05D005905 ORTHO05D005996 4.5e-16 89.4 179 38.5
Sc09g0001990 Simmondsia chinensis HOM05D005905 ORTHO05D005996 4.5e-16 89.4 173 35.8
BcaNung03737 Brassica carinata HOM05D005905 ORTHO05D005996 5.9e-16 89.0 189 36.0
BolC7t44931H Brassica oleracea HOM05D005905 ORTHO05D005996 5.9e-16 89.0 189 36.0
PGSC0003DMG400023332 Solanum tuberosum HOM05D005905 ORTHO05D005996 5.9e-16 89.0 183 35.0
MBI03_g20878_MAGBIO Magnolia biondii HOM05D005905 ORTHO05D005996 7.7e-16 88.6 179 36.9
MD15G1334300 Malus domestica HOM05D005905 ORTHO05D005996 7.7e-16 88.6 178 33.7
TWI75G0068 Tripterygium wilfordii HOM05D005905 ORTHO05D005996 7.7e-16 88.6 176 36.4
TAR628G0724 Trochodendron aralioides HOM05D005905 ORTHO05D005996 7.7e-16 88.6 178 34.8
C07p44070 Brassica napus HOM05D005905 ORTHO05D005996 1.0e-15 88.2 189 36.0
Pp3c21_2450 Physcomitrium patens HOM05D005905 ORTHO05D005996 1.0e-15 88.2 188 32.4
Cpa.g.sc127.35 Carica papaya HOM05D005905 ORTHO05D005996 1.3e-15 87.8 178 34.8
Medtr7g081260 Medicago truncatula HOM05D005905 ORTHO05D005996 1.3e-15 87.8 207 35.3
Nitab4.5_0010070g0020 Nicotiana tabacum HOM05D005905 ORTHO05D005996 1.3e-15 87.8 181 33.7
Cc07_g19890 Coffea canephora HOM05D005905 ORTHO05D005996 1.7e-15 87.4 179 35.8
DCAR_019943 Daucus carota HOM05D005905 ORTHO05D005996 1.7e-15 87.4 213 35.7
Nitab4.5_0000496g0260 Nicotiana tabacum HOM05D005905 ORTHO05D005996 1.7e-15 87.4 198 32.8
Glyma.18G248600 Glycine max HOM05D005905 ORTHO05D005996 2.3e-15 87.0 175 37.1
Solyc05g056320.3 Solanum lycopersicum HOM05D005905 ORTHO05D005996 2.3e-15 87.0 174 35.6
FvH4_1g22090 Fragaria vesca HOM05D005905 ORTHO05D005996 2.9e-15 86.7 209 33.5
Peaxi162Scf00353g00730 Petunia axillaris HOM05D005905 ORTHO05D005996 3.8e-15 86.3 187 33.7
A06p34480 Brassica napus HOM05D005905 ORTHO05D005996 5.0e-15 85.9 189 35.4
BraA06t26376Z Brassica rapa HOM05D005905 ORTHO05D005996 5.0e-15 85.9 189 35.4
CAN.G1921.10 Capsicum annuum HOM05D005905 ORTHO05D005996 5.0e-15 85.9 189 32.8
GSVIVG01000261001 Vitis vinifera HOM05D005905 ORTHO05D005996 5.0e-15 85.9 178 37.6
Carub.0006s2129 Capsella rubella HOM05D005905 ORTHO05D005996 6.6e-15 85.5 189 34.9
AT5G23520 Arabidopsis thaliana HOM05D005905 ORTHO05D005996 1.1e-14 84.7 189 35.4
EL10Ac4g09704 Beta vulgaris HOM05D005905 ORTHO05D005996 1.5e-14 84.3 238 31.5
HPP92_011435 Vanilla planifolia HOM05D005905 ORTHO05D005996 1.5e-14 84.3 160 36.9
EL10Ac8g19310 Beta vulgaris HOM05D005905 ORTHO05D005996 1.9e-14 84.0 238 31.1
Phvul.008G048800 Phaseolus vulgaris HOM05D005905 ORTHO05D005996 1.9e-14 84.0 170 37.1
CARHR190020 Cardamine hirsuta HOM05D005905 ORTHO05D005996 2.5e-14 83.6 178 33.7
Duzib187G1788 Durio zibethinus HOM05D005905 ORTHO05D005996 2.5e-14 83.6 167 36.5
Prupe.6G175200 Prunus persica HOM05D005905 ORTHO05D005996 2.5e-14 83.6 178 34.8
Potri.T013000 Populus trichocarpa HOM05D005905 ORTHO05D005996 4.2e-14 82.8 189 34.4
AUR62000575 Chenopodium quinoa HOM05D005905 ORTHO05D005996 5.5e-14 82.4 198 31.3
THA.LOC104800580 Tarenaya hassleriana HOM05D005905 ORTHO05D005996 5.5e-14 82.4 189 33.9
Thhalv10004341m.g Eutrema salsugineum HOM05D005905 ORTHO05D005996 7.2e-14 82.0 176 35.8
Aa31LG11G2910 Aethionema arabicum HOM05D005905 ORTHO05D005996 9.5e-14 81.6 189 34.4
Sed0023505 Sechium edule HOM05D005905 ORTHO05D005996 9.5e-14 81.6 178 35.4
AL6G34790 Arabidopsis lyrata HOM05D005905 ORTHO05D005996 1.2e-13 81.3 189 33.3
QL09p047332 Quercus lobata HOM05D005905 ORTHO05D005996 1.2e-13 81.3 139 41.7
Sp2g23680 Schrenkiella parvula HOM05D005905 ORTHO05D005996 1.2e-13 81.3 188 33.5
MELO3C015720.2 Cucumis melo HOM05D005905 ORTHO05D005996 1.6e-13 80.9 176 36.4
QL05p019434 Quercus lobata HOM05D005905 ORTHO05D005996 2.1e-13 80.5 139 41.7
BcaNung03738 Brassica carinata HOM05D005905 ORTHO05D005996 3.6e-13 79.7 189 33.9
BcaNung03739 Brassica carinata HOM05D005905 ORTHO05D005996 3.6e-13 79.7 189 33.9
SHI08855 Sapria himalayana HOM05D005905 ORTHO05D005996 4.7e-13 79.3 113 45.1
Atru.chr3.1426 Acer truncatum HOM05D005905 ORTHO05D005996 1.0e-12 78.2 98 46.9
unitig_899.g14973 Utricularia gibba HOM05D005905 ORTHO05D005996 1.0e-12 78.2 181 34.3
ATR1089G162 Amborella trichopoda HOM05D005905 ORTHO05D005996 1.8e-12 77.4 167 32.3
Medtr6g034130 Medicago truncatula HOM05D005905 ORTHO05D005996 1.8e-12 77.4 124 38.7
Sabra19G0011400 Salix brachista HOM05D005905 ORTHO05D005996 2.3e-12 77.0 260 29.2
Aqoxy6G00049 Aquilegia oxysepala HOM05D005905 ORTHO05D005996 3.0e-12 76.6 161 36.6
CsaV3_7G027220 Cucumis sativus L. HOM05D005905 ORTHO05D005996 3.0e-12 76.6 176 35.2
Ciclev10025459m.g Citrus clementina HOM05D005905 ORTHO05D005996 5.2e-12 75.9 100 46.0
Sabra19G0001400 Salix brachista HOM05D005905 ORTHO05D005996 5.2e-12 75.9 260 28.8
Dinv17124 Davidia involucrata HOM05D010983 ORTHO05D005996 6.8e-12 75.5 187 33.2
Lalb_Chr20g0117801 Lupinus albus HOM05D005905 ORTHO05D005996 1.2e-11 74.7 153 32.7
Lalb_Chr20g0117861 Lupinus albus HOM05D005905 ORTHO05D005996 1.2e-11 74.7 153 32.7
ClCG09G007860 Citrullus lanatus HOM05D005905 ORTHO05D005996 9.8e-11 71.6 199 32.2
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 9.8e-11 71.6 274 31.0
BcaNung03858 Brassica carinata HOM05D005905 ORTHO05D005996 3.7e-10 69.7 175 32.6
QL09p028391 Quercus lobata HOM05D005905 ORTHO05D005996 4.9e-10 69.3 140 38.6
Ah.06g188350 Amaranthus hybridus HOM05D005905 ORTHO05D005996 8.3e-10 68.6 145 34.5
FAN19G0082 Fragaria x ananassa HOM05D005905 ORTHO05D005996 1.4e-09 67.8 254 28.0
Cc07_g19900 Coffea canephora HOM05D005905 ORTHO05D005996 2.4e-09 67.0 114 37.7
vmacro12853 Vaccinium macrocarpon HOM05D005905 ORTHO05D005996 2.4e-09 67.0 248 27.8
TPR.G33754 Trifolium pratense HOM05D005905 ORTHO05D005996 3.2e-09 66.6 114 41.2
SEGI_25644 Sequoiadendron giganteum HOM05D000001 ORTHO05D004044 4.1e-09 66.2 153 34.0
Cre12.g547950 Chlamydomonas reinhardtii HOM05D045330 ORTHO05D044071 9.2e-09 65.1 151 33.1
Ah.06g188340 Amaranthus hybridus HOM05D005905 ORTHO05D005996 2.0e-08 63.9 134 35.8
FAN28G0415 Fragaria x ananassa HOM05D000290 ORTHO05D002418 3.5e-08 63.2 212 28.8
RcHm_v2.0_Chr5g0069461 Rosa chinensis HOM05D005281 ORTHO05D006351 4.5e-08 62.8 142 36.6
FAN23G0918 Fragaria x ananassa HOM05D000290 ORTHO05D002418 7.8e-08 62.0 136 33.1
FAN26G1302 Fragaria x ananassa HOM05D000290 ORTHO05D002418 1.0e-07 61.6 136 33.1
Medtr6g034165 Medicago truncatula HOM05D005905 ORTHO05D005996 1.0e-07 61.6 153 30.7
Pp3c15_15290 Physcomitrium patens HOM05D005281 ORTHO05D006351 2.9e-07 60.1 173 35.3
Pp3c26_4880 Physcomitrium patens HOM05D000001 ORTHO05D004044 3.9e-07 59.7 160 29.4
Lj3g0014044 Lotus japonicus HOM05D005905 ORTHO05D005996 6.6e-07 58.9 115 35.7
FAN11G1688 Fragaria x ananassa HOM05D005281 ORTHO05D006351 8.6e-07 58.5 142 35.9
FAN16G1244 Fragaria x ananassa HOM05D005281 ORTHO05D006351 8.6e-07 58.5 142 35.9
FAN25G0418 Fragaria x ananassa HOM05D005281 ORTHO05D006351 8.6e-07 58.5 213 28.6
FAN21G2151 Fragaria x ananassa HOM05D005281 ORTHO05D006351 1.1e-06 58.2 142 35.2
FvH4_3g38560 Fragaria vesca HOM05D005281 ORTHO05D006351 1.5e-06 57.8 142 35.9
VMungo0540G0631 Vigna mungo HOM05D005281 ORTHO05D006351 2.5e-06 57.0 137 33.6
Sabra09G0033500 Salix brachista HOM05D005281 ORTHO05D006351 3.3e-06 56.6 137 35.0
BcaB05g22447 Brassica carinata HOM05D005281 ORTHO05D006351 4.3e-06 56.2 233 26.6
CAN.G117.2 Capsicum annuum HOM05D000001 ORTHO05D004044 4.3e-06 56.2 234 26.5
Lj6g0025988 Lotus japonicus HOM05D005281 ORTHO05D006351 4.3e-06 56.2 120 39.2
Medtr3g463770 Medicago truncatula HOM05D005281 ORTHO05D006351 7.3e-06 55.5 137 32.8
C02p13130 Brassica napus HOM05D005281 ORTHO05D006351 9.5e-06 55.1 246 26.4
BolC2t07431H Brassica oleracea HOM05D005281 ORTHO05D006351 9.5e-06 55.1 246 26.4
CSS0033286 Camellia sinensis var. sinensis HOM05D005281 ORTHO05D006351 9.5e-06 55.1 137 34.3
Potri.009G046300 Populus trichocarpa HOM05D005281 ORTHO05D006351 9.5e-06 55.1 139 33.8
Sed0025024 Sechium edule HOM05D000001 ORTHO05D004044 9.5e-06 55.1 153 32.7


User provided reference genes

Program Settings