Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO239G0051 Selaginella moellendorffii HOM05D005951 ORTHO05D007025 5.5e-130 467.6 232 100.0
SEGI_21232 Sequoiadendron giganteum HOM05D005951 ORTHO05D007025 1.3e-91 340.1 231 71.0
Mapoly0073s0056 Marchantia polymorpha HOM05D005951 ORTHO05D007025 1.9e-90 336.3 223 71.3
FvH4_1g09390 Fragaria vesca HOM05D005951 ORTHO05D007025 1.1e-85 320.5 224 67.4
FAN19G2090 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.1e-85 320.5 224 67.4
FAN26G0600 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.1e-85 320.5 224 67.4
FAN28G0037 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.4e-85 320.1 224 67.0
FAN28G0822 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.4e-85 320.1 224 67.0
FAN26G2189 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.8e-85 319.7 224 67.4
RcHm_v2.0_Chr2g0095941 Rosa chinensis HOM05D005951 ORTHO05D007025 1.8e-85 319.7 230 65.2
ATR0317G112 Amborella trichopoda HOM05D005951 ORTHO05D007025 4.1e-85 318.5 232 64.7
Aqoxy7G04154 Aquilegia oxysepala HOM05D005951 ORTHO05D007025 7.0e-85 317.8 229 65.9
Gorai.009G038100 Gossypium raimondii HOM05D005951 ORTHO05D007025 7.0e-85 317.8 229 64.6
Atru.chr7.1767 Acer truncatum HOM05D005951 ORTHO05D007025 3.5e-84 315.5 230 65.2
Duzib168G0975 Durio zibethinus HOM05D005951 ORTHO05D007025 4.6e-84 315.1 229 64.2
GSVIVG01015014001 Vitis vinifera HOM05D005951 ORTHO05D007025 4.6e-84 315.1 226 65.5
TAR383G1060 Trochodendron aralioides HOM05D005951 ORTHO05D007025 5.9e-84 314.7 229 65.9
Gohir.D05G037600 Gossypium hirsutum HOM05D005951 ORTHO05D007025 1.7e-83 313.2 229 64.2
Potri.018G063600 Populus trichocarpa HOM05D005951 ORTHO05D007025 3.0e-83 312.4 227 63.9
CiPaw.03G200400 Carya illinoinensis HOM05D005951 ORTHO05D007025 5.0e-83 311.6 227 64.3
Cc06_g12700 Coffea canephora HOM05D005951 ORTHO05D007025 5.0e-83 311.6 218 66.1
Manes.16G090500 Manihot esculenta HOM05D005951 ORTHO05D007025 5.0e-83 311.6 237 62.0
Thecc.09G070300 Theobroma cacao HOM05D005951 ORTHO05D007025 5.0e-83 311.6 222 65.3
FAN23G1113 Fragaria x ananassa HOM05D005951 ORTHO05D007025 8.6e-83 310.8 228 65.4
Manes.03G044600 Manihot esculenta HOM05D005951 ORTHO05D007025 8.6e-83 310.8 225 63.6
ClCG03G014750 Citrullus lanatus HOM05D005951 ORTHO05D007025 1.1e-82 310.5 228 64.9
Lj4g0000458 Lotus japonicus HOM05D005951 ORTHO05D007025 1.5e-82 310.1 227 63.9
Cpa.g.sc82.63 Carica papaya HOM05D005951 ORTHO05D007025 1.9e-82 309.7 226 63.3
Potri.006G136500 Populus trichocarpa HOM05D005951 ORTHO05D007025 2.5e-82 309.3 225 64.9
Duzib150G0422 Durio zibethinus HOM05D005951 ORTHO05D007025 3.3e-82 308.9 227 63.0
Gohir.A05G036100 Gossypium hirsutum HOM05D005951 ORTHO05D007025 3.3e-82 308.9 237 62.0
Peaxi162Scf00474g00521 Petunia axillaris HOM05D005951 ORTHO05D007025 3.3e-82 308.9 227 63.0
CSS0032580 Camellia sinensis var. sinensis HOM05D005951 ORTHO05D007025 4.3e-82 308.5 227 62.6
MD02G1102200 Malus domestica HOM05D005951 ORTHO05D007025 4.3e-82 308.5 227 63.4
Eucgr.C03197 Eucalyptus grandis HOM05D005951 ORTHO05D007025 7.3e-82 307.8 224 63.8
Eucgr.L02230 Eucalyptus grandis HOM05D005951 ORTHO05D007025 7.3e-82 307.8 224 63.8
VMungo1215G3086 Vigna mungo HOM05D005951 ORTHO05D007025 9.5e-82 307.4 227 63.9
CANSAT56G0116 Cannabis sativa HOM05D005951 ORTHO05D007025 1.2e-81 307.0 224 64.7
Lsat_1_v5_gn_5_138841 Lactuca sativa HOM05D005951 ORTHO05D007025 1.2e-81 307.0 226 63.7
Nitab4.5_0000170g0090 Nicotiana tabacum HOM05D005951 ORTHO05D007025 1.2e-81 307.0 232 61.6
QL11p002956 Quercus lobata HOM05D005951 ORTHO05D007025 1.6e-81 306.6 224 63.8
Prupe.7G192100 Prunus persica HOM05D005951 ORTHO05D007025 2.1e-81 306.2 227 61.7
Actinidia39617 Actinidia chinensis HOM05D005951 ORTHO05D007025 2.8e-81 305.8 227 63.4
CANSAT56G0193 Cannabis sativa HOM05D005951 ORTHO05D007025 2.8e-81 305.8 224 64.7
Dinv25506 Davidia involucrata HOM05D005951 ORTHO05D007025 2.8e-81 305.8 225 63.6
CiPaw.04G140200 Carya illinoinensis HOM05D005951 ORTHO05D007025 3.6e-81 305.4 227 62.6
CsaV3_1G041410 Cucumis sativus L. HOM05D005951 ORTHO05D007025 3.6e-81 305.4 228 64.9
Glyma.17G045500 Glycine max HOM05D005951 ORTHO05D007025 6.2e-81 304.7 227 62.1
Sabra06G0106700 Salix brachista HOM05D005951 ORTHO05D007025 6.2e-81 304.7 225 64.0
Sed0006808 Sechium edule HOM05D005951 ORTHO05D007025 6.2e-81 304.7 228 63.2
MBI13_g01673_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 8.0e-81 304.3 229 64.2
Nn6g35632 Nelumbo nucifera HOM05D005951 ORTHO05D007025 8.0e-81 304.3 225 64.0
Sed0027227 Sechium edule HOM05D005951 ORTHO05D007025 8.0e-81 304.3 230 63.5
PSO724G0923 Papaver somniferum HOM05D005951 ORTHO05D007025 1.1e-80 303.9 218 65.6
Pp3c18_14720 Physcomitrium patens HOM05D005951 ORTHO05D007025 1.4e-80 303.5 222 67.1
Cfa002937 Carpinus fangiana HOM05D005951 ORTHO05D007025 1.8e-80 303.1 220 64.5
PSO135G0575 Papaver somniferum HOM05D005951 ORTHO05D007025 4.0e-80 302.0 218 65.1
Ciclev10009369m.g Citrus clementina HOM05D005951 ORTHO05D007025 5.2e-80 301.6 227 62.1
Pp3c21_14860 Physcomitrium patens HOM05D005951 ORTHO05D007025 5.2e-80 301.6 222 65.3
arahy.Tifrunner.gnm1.ann1.7AU96Q Arachis hypogaea HOM05D005951 ORTHO05D007025 6.8e-80 301.2 234 61.1
Glyma.13G114300 Glycine max HOM05D005951 ORTHO05D007025 8.9e-80 300.8 227 61.2
CDE07G2051 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 1.2e-79 300.4 231 64.5
arahy.Tifrunner.gnm1.ann1.JRQ3DB Arachis hypogaea HOM05D005951 ORTHO05D007025 1.5e-79 300.1 227 62.1
ECA234G1587 Erigeron canadensis HOM05D005951 ORTHO05D007025 1.5e-79 300.1 220 63.2
Lalb_Chr07g0181411 Lupinus albus HOM05D005951 ORTHO05D007025 2.6e-79 299.3 228 63.2
PGSC0003DMG400013572 Solanum tuberosum HOM05D005951 ORTHO05D007025 2.6e-79 299.3 225 60.4
HPP92_004361 Vanilla planifolia HOM05D005951 ORTHO05D007025 3.4e-79 298.9 223 63.2
Lalb_Chr13g0299191 Lupinus albus HOM05D005951 ORTHO05D007025 4.4e-79 298.5 228 62.7
Phvul.003G127300 Phaseolus vulgaris HOM05D005951 ORTHO05D007025 4.4e-79 298.5 227 61.2
THA.LOC104803783 Tarenaya hassleriana HOM05D005951 ORTHO05D007025 4.4e-79 298.5 232 60.8
MD15G1223700 Malus domestica HOM05D005951 ORTHO05D007025 7.5e-79 297.7 217 63.1
EL10Ac8g18966 Beta vulgaris HOM05D005951 ORTHO05D007025 1.3e-78 297.0 226 62.8
BraA01t00476Z Brassica rapa HOM05D000526 ORTHO05D007025 1.3e-78 297.0 232 60.8
COL.COLO4_21208 Corchorus olitorius HOM05D005951 ORTHO05D007025 1.7e-78 296.6 229 61.6
MSTRG.26500 Avicennia marina HOM05D005951 ORTHO05D007025 2.2e-78 296.2 218 62.8
CAN.G54.13 Capsicum annuum HOM05D005951 ORTHO05D007025 3.7e-78 295.4 232 59.9
Os03g0182700 Oryza sativa ssp. japonica HOM05D005951 ORTHO05D007025 3.7e-78 295.4 225 62.2
TWI34G0930 Tripterygium wilfordii HOM05D005951 ORTHO05D007025 3.7e-78 295.4 226 61.5
Ca_21339_v3 Cicer arietinum L. HOM05D000240 ORTHO05D002721 4.9e-78 295.0 228 61.8
DCAR_028530 Daucus carota HOM05D005951 ORTHO05D007025 4.9e-78 295.0 226 61.5
C01p05390 Brassica napus HOM05D000526 ORTHO05D000956 6.4e-78 294.7 229 61.1
Medtr4g124640 Medicago truncatula HOM05D005951 ORTHO05D007025 6.4e-78 294.7 227 61.2
Haze_26069 Corylus avellana HOM05D005951 ORTHO05D007025 1.1e-77 293.9 235 60.4
Solyc07g042570.3 Solanum lycopersicum HOM05D005951 ORTHO05D007025 1.1e-77 293.9 225 59.6
Sopen07g022260 Solanum pennellii HOM05D005951 ORTHO05D007025 1.1e-77 293.9 225 59.6
Zm00001eb401690 Zea mays HOM05D005951 ORTHO05D007025 1.1e-77 293.9 225 62.7
AUR62028321 Chenopodium quinoa HOM05D005951 ORTHO05D007025 3.2e-77 292.4 218 61.9
BcaC09g52137 Brassica carinata HOM05D005951 ORTHO05D007025 4.1e-77 292.0 232 59.9
BolC1t00519H Brassica oleracea HOM05D000526 ORTHO05D007025 4.1e-77 292.0 227 60.8
Migut.J00881 Erythranthe guttata HOM05D005951 ORTHO05D007025 5.4e-77 291.6 227 59.9
Thhalv10026154m.g Eutrema salsugineum HOM05D005951 ORTHO05D007025 7.0e-77 291.2 232 59.9
BcaC01g01000 Brassica carinata HOM05D005951 ORTHO05D007025 1.6e-76 290.0 227 59.0
BolC3t20971H Brassica oleracea HOM05D005951 ORTHO05D007025 1.6e-76 290.0 227 59.0
SGA_v2.0_scaffold55G19875 Striga asiatica HOM05D005951 ORTHO05D007025 1.6e-76 290.0 227 59.5
BcaB03g12809 Brassica carinata HOM05D005951 ORTHO05D007025 2.0e-76 289.7 232 57.8
Sp7g31000 Schrenkiella parvula HOM05D005951 ORTHO05D007025 4.6e-76 288.5 232 58.6
AL7G18300 Arabidopsis lyrata HOM05D005951 ORTHO05D007025 6.0e-76 288.1 229 59.8
C03p86770 Brassica napus HOM05D005951 ORTHO05D007025 6.0e-76 288.1 233 58.8
BraA08t33722Z Brassica rapa HOM05D005951 ORTHO05D007025 6.0e-76 288.1 233 58.4
TPR.G12577 Trifolium pratense HOM05D005951 ORTHO05D007025 6.0e-76 288.1 232 59.1
A08p17720 Brassica napus HOM05D005951 ORTHO05D007025 1.0e-75 287.3 228 59.2
PGR044G1586 Punica granatum HOM05D005951 ORTHO05D007025 1.0e-75 287.3 227 59.9
HanXRQChr10g0319821 Helianthus annuus HOM05D005951 ORTHO05D007025 3.0e-75 285.8 227 62.6
Oeu041808.1 Olea europaea HOM05D005951 ORTHO05D007025 4.3e-74 282.0 235 55.7
Carub.0007s0721 Capsella rubella HOM05D005951 ORTHO05D007025 7.3e-74 281.2 233 57.5
AT4G33250 Arabidopsis thaliana HOM05D005951 ORTHO05D007025 1.2e-73 280.4 229 59.8
Aa31LG5G9380 Aethionema arabicum HOM05D005951 ORTHO05D007025 2.1e-73 279.6 232 56.9
MELO3C015553.2 Cucumis melo HOM05D005951 ORTHO05D007025 6.2e-73 278.1 228 60.5
MBI19_g36230_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 1.2e-71 273.9 229 59.4
A03p61920 Brassica napus HOM05D000526 ORTHO05D007025 1.5e-71 273.5 255 52.9
Lj7C692T6 Lonicera japonica HOM05D005951 ORTHO05D007025 8.3e-70 267.7 224 59.4
CDE06G1359 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 1.1e-69 267.3 189 68.3
Nitab4.5_0003139g0080 Nicotiana tabacum HOM05D005951 ORTHO05D007025 1.2e-68 263.8 232 55.6
Hund26110 Selenicereus undatus HOM05D005951 ORTHO05D007025 1.2e-68 263.8 225 56.0
unitig_899.g15181 Utricularia gibba HOM05D005951 ORTHO05D007025 2.1e-68 263.1 227 54.2
Oeu000276.3 Olea europaea HOM05D005951 ORTHO05D007025 7.8e-68 261.2 301 44.9
vmacro17078 Vaccinium macrocarpon HOM05D005951 ORTHO05D007025 7.8e-68 261.2 321 44.9
Actinidia30258 Actinidia chinensis HOM05D005951 ORTHO05D007025 5.1e-67 258.5 187 64.7
C07p59570 Brassica napus HOM05D005951 ORTHO05D007025 4.3e-66 255.4 229 55.0
Zm00001eb401710 Zea mays HOM05D005951 ORTHO05D007025 9.5e-66 254.2 192 63.0
BraA03t15230Z Brassica rapa HOM05D005951 ORTHO05D007025 1.6e-65 253.4 190 62.6
BcaNung02163 Brassica carinata HOM05D005951 ORTHO05D007025 8.1e-65 251.1 229 53.7
AUR62025338 Chenopodium quinoa HOM05D005951 ORTHO05D007025 3.1e-64 249.2 192 59.4
AagrBONN_evm.TU.Sc2ySwM_117.912 Anthoceros agrestis HOM05D005951 ORTHO05D007025 8.9e-64 247.7 154 74.7
Rhsim05G0002100 Rhododendron simsii HOM05D005951 ORTHO05D007025 4.9e-62 241.9 234 53.0
Zm00001eb006150 Zea mays HOM05D005951 ORTHO05D007025 4.7e-57 225.3 168 62.5
CBR_g16046 Chara braunii HOM05D005951 ORTHO05D007025 9.0e-56 221.1 218 51.8
Sc08g0009170 Simmondsia chinensis HOM05D005951 ORTHO05D007025 2.0e-55 219.9 160 66.2
BolC7t46402H Brassica oleracea HOM05D005951 ORTHO05D007025 9.3e-53 211.1 197 51.8
Migut.L01596 Erythranthe guttata HOM05D005951 ORTHO05D007025 5.4e-45 185.3 226 43.8
Cre12.g515650 Chlamydomonas reinhardtii HOM05D005951 ORTHO05D007025 3.0e-35 152.9 203 41.4
CARHR241300 Cardamine hirsuta HOM05D005951 ORTHO05D007025 4.3e-34 149.1 118 55.1
SalBow6G6500 Salvia bowleyana HOM05D005951 ORTHO05D007025 3.5e-28 129.4 94 62.8
PRCOL_00003879 Prasinoderma coloniale HOM05D005951 ORTHO05D007025 4.3e-26 122.5 203 34.5
MD02G1101200 Malus domestica HOM05D005951 ORTHO05D007025 1.2e-20 104.4 97 54.6


User provided reference genes

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