Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO239G0030 Selaginella moellendorffii HOM05D007323 ORTHO05D009238 1.0e-120 436.8 231 100.0
SEGI_00918 Sequoiadendron giganteum HOM05D007323 ORTHO05D009238 1.1e-40 171.0 241 46.9
Ciclev10009314m.g Citrus clementina HOM05D007323 ORTHO05D009238 1.8e-40 170.2 202 51.0
Pp3c4_13280 Physcomitrium patens HOM05D007323 ORTHO05D009238 1.8e-40 170.2 176 52.8
ATR0598G133 Amborella trichopoda HOM05D007323 ORTHO05D009238 3.1e-40 169.5 178 54.5
PSO063G6894 Papaver somniferum HOM05D007323 ORTHO05D009238 1.2e-39 167.5 207 46.4
Os03g0176700 Oryza sativa ssp. japonica HOM05D007323 ORTHO05D009238 1.5e-39 167.2 196 50.5
Zm00001eb005760 Zea mays HOM05D007323 ORTHO05D009238 2.0e-39 166.8 170 55.3
PSO421G0353 Papaver somniferum HOM05D007323 ORTHO05D009238 2.6e-39 166.4 207 45.9
Eucgr.B01965 Eucalyptus grandis HOM05D007323 ORTHO05D009238 3.4e-39 166.0 189 52.4
PGR031G0894 Punica granatum HOM05D007323 ORTHO05D009238 4.4e-39 165.6 208 48.1
Medtr3g105050 Medicago truncatula HOM05D007323 ORTHO05D009238 7.6e-39 164.9 229 45.9
TPR.G3557 Trifolium pratense HOM05D007323 ORTHO05D009238 1.3e-38 164.1 197 49.7
Ca_15835_v3 Cicer arietinum L. HOM05D007323 ORTHO05D009238 1.7e-38 163.7 221 47.1
COL.COLO4_21139 Corchorus olitorius HOM05D007323 ORTHO05D009238 2.2e-38 163.3 199 49.7
Potri.006G220800 Populus trichocarpa HOM05D007323 ORTHO05D009238 2.9e-38 162.9 227 43.6
Lj1g0021270 Lotus japonicus HOM05D007323 ORTHO05D009238 3.8e-38 162.5 219 47.0
QL02p017014 Quercus lobata HOM05D007323 ORTHO05D009238 6.4e-38 161.8 197 48.2
Sabra06G0170600 Salix brachista HOM05D007323 ORTHO05D009238 8.4e-38 161.4 227 43.2
MSTRG.25986 Avicennia marina HOM05D007323 ORTHO05D009238 1.1e-37 161.0 200 47.5
CiPaw.16G068300 Carya illinoinensis HOM05D007323 ORTHO05D009238 1.4e-37 160.6 235 43.4
HPP92_024332 Vanilla planifolia HOM05D007323 ORTHO05D009238 1.4e-37 160.6 204 48.0
Carub.0004s0625 Capsella rubella HOM05D007323 ORTHO05D009238 4.2e-37 159.1 212 45.8
AL4G18960 Arabidopsis lyrata HOM05D007323 ORTHO05D009238 7.1e-37 158.3 210 46.2
CDE05G0862 Ceratophyllum demersum HOM05D007323 ORTHO05D009238 9.3e-37 157.9 223 46.2
Mapoly0001s0019 Marchantia polymorpha HOM05D007323 ORTHO05D009238 1.2e-36 157.5 175 52.6
unitig_8.g4975 Utricularia gibba HOM05D007323 ORTHO05D009238 1.2e-36 157.5 200 47.5
Gohir.D07G019400 Gossypium hirsutum HOM05D007323 ORTHO05D009238 1.6e-36 157.1 230 45.2
SGA_v2.0_scaffold20G09163 Striga asiatica HOM05D007323 ORTHO05D009238 1.6e-36 157.1 213 46.0
AagrBONN_evm.TU.Sc2ySwM_228.4439 Anthoceros agrestis HOM05D007323 ORTHO05D009238 2.1e-36 156.8 177 50.8
Gorai.001G020100 Gossypium raimondii HOM05D007323 ORTHO05D009238 2.7e-36 156.4 228 45.2
Nn8g38659 Nelumbo nucifera HOM05D007323 ORTHO05D009238 2.7e-36 156.4 219 44.7
THA.LOC104819519 Tarenaya hassleriana HOM05D007323 ORTHO05D009238 2.7e-36 156.4 201 47.3
Lalb_Chr08g0244811 Lupinus albus HOM05D007323 ORTHO05D009238 3.5e-36 156.0 212 45.8
Thecc.09G063400 Theobroma cacao HOM05D007323 ORTHO05D009238 3.5e-36 156.0 166 54.2
BraA09t40931Z Brassica rapa HOM05D007323 ORTHO05D009238 4.6e-36 155.6 211 44.1
MELO3C011483.2 Cucumis melo HOM05D007323 ORTHO05D009238 4.6e-36 155.6 211 46.9
Duzib150G1239 Durio zibethinus HOM05D007323 ORTHO05D009238 4.6e-36 155.6 199 49.2
FvH4_2g30980 Fragaria vesca HOM05D007323 ORTHO05D009238 4.6e-36 155.6 198 45.5
Nitab4.5_0002831g0040 Nicotiana tabacum HOM05D007323 ORTHO05D009238 4.6e-36 155.6 197 45.7
Actinidia03545 Actinidia chinensis HOM05D007323 ORTHO05D009238 6.0e-36 155.2 179 52.0
BcaB08g35255 Brassica carinata HOM05D007323 ORTHO05D009238 7.8e-36 154.8 224 43.8
BcaC07g40825 Brassica carinata HOM05D007323 ORTHO05D009238 7.8e-36 154.8 209 45.9
C08p38170 Brassica napus HOM05D007323 ORTHO05D009238 7.8e-36 154.8 209 45.9
BolC8t51392H Brassica oleracea HOM05D007323 ORTHO05D009238 7.8e-36 154.8 209 45.9
Thhalv10002091m.g Eutrema salsugineum HOM05D007323 ORTHO05D009238 7.8e-36 154.8 211 46.0
Nitab4.5_0000446g0180 Nicotiana tabacum HOM05D007323 ORTHO05D009238 1.0e-35 154.5 197 45.2
Cfa017873 Carpinus fangiana HOM05D007323 ORTHO05D009238 1.3e-35 154.1 185 48.6
FAN24G0989 Fragaria x ananassa HOM05D007323 ORTHO05D009238 1.3e-35 154.1 198 44.9
vmacro05236 Vaccinium macrocarpon HOM05D007323 ORTHO05D009238 1.3e-35 154.1 173 51.4
Cc08_g01150 Coffea canephora HOM05D007323 ORTHO05D009238 1.7e-35 153.7 192 45.8
Sed0017686 Sechium edule HOM05D007323 ORTHO05D009238 1.7e-35 153.7 214 47.2
Aqoxy7G01049 Aquilegia oxysepala HOM05D007323 ORTHO05D009238 2.3e-35 153.3 165 53.9
Sp4g06990 Schrenkiella parvula HOM05D007323 ORTHO05D009238 2.3e-35 153.3 209 44.5
Atru.chr7.1847 Acer truncatum HOM05D007323 ORTHO05D009238 3.9e-35 152.5 166 52.4
Glyma.06G055900 Glycine max HOM05D007323 ORTHO05D009238 3.9e-35 152.5 210 46.7
ClCG08G009880 Citrullus lanatus HOM05D007323 ORTHO05D009238 5.1e-35 152.1 211 46.9
FAN27G1709 Fragaria x ananassa HOM05D007323 ORTHO05D009238 5.1e-35 152.1 198 44.4
A09p55240 Brassica napus HOM05D007323 ORTHO05D009238 6.6e-35 151.8 212 43.4
GSVIVG01035470001 Vitis vinifera HOM05D007323 ORTHO05D009238 8.7e-35 151.4 177 50.3
CsaV3_6G031970 Cucumis sativus L. HOM05D007323 ORTHO05D009238 1.1e-34 151.0 195 47.2
FAN20G2477 Fragaria x ananassa HOM05D007323 ORTHO05D009238 1.1e-34 151.0 198 43.9
arahy.Tifrunner.gnm1.ann1.7DEW7H Arachis hypogaea HOM05D007323 ORTHO05D009238 2.5e-34 149.8 192 46.4
AT2G26340 Arabidopsis thaliana HOM05D007323 ORTHO05D009238 4.3e-34 149.1 222 44.6
Gohir.A07G019600 Gossypium hirsutum HOM05D007323 ORTHO05D009238 4.3e-34 149.1 179 50.3
Phvul.009G082000 Phaseolus vulgaris HOM05D007323 ORTHO05D009238 4.3e-34 149.1 219 43.8
RcHm_v2.0_Chr6g0311811 Rosa chinensis HOM05D007323 ORTHO05D009238 4.3e-34 149.1 212 42.5
Rhsim10G0107900 Rhododendron simsii HOM05D007323 ORTHO05D009238 7.3e-34 148.3 168 50.6
MD15G1049800 Malus domestica HOM05D007323 ORTHO05D009238 9.6e-34 147.9 195 45.1
CARHR118450 Cardamine hirsuta HOM05D007323 ORTHO05D009238 1.3e-33 147.5 176 48.3
Hund03297 Selenicereus undatus HOM05D007323 ORTHO05D009238 1.3e-33 147.5 202 42.6
Dinv41843 Davidia involucrata HOM05D007323 ORTHO05D009238 1.6e-33 147.1 199 45.2
Migut.A00078 Erythranthe guttata HOM05D007323 ORTHO05D009238 1.6e-33 147.1 186 49.5
VMungo1309G0522 Vigna mungo HOM05D007323 ORTHO05D009238 1.6e-33 147.1 221 43.9
TWI34G0887 Tripterygium wilfordii HOM05D007323 ORTHO05D009238 2.1e-33 146.7 224 42.0
Manes.16G085700 Manihot esculenta HOM05D007323 ORTHO05D009238 2.8e-33 146.4 211 43.6
Aa31LG2G12250 Aethionema arabicum HOM05D007323 ORTHO05D009238 3.6e-33 146.0 227 42.7
Prupe.1G404100 Prunus persica HOM05D007323 ORTHO05D009238 3.6e-33 146.0 196 45.4
CANSAT25G3877 Cannabis sativa HOM05D007323 ORTHO05D009238 6.2e-33 145.2 167 47.9
Lsat_1_v5_gn_5_79461 Lactuca sativa HOM05D007323 ORTHO05D009238 6.2e-33 145.2 188 45.2
ECA234G0604 Erigeron canadensis HOM05D007323 ORTHO05D009238 1.1e-32 144.4 199 42.7
HanXRQChr10g0309971 Helianthus annuus HOM05D007323 ORTHO05D009238 1.1e-32 144.4 188 45.7
DCAR_007767 Daucus carota HOM05D007323 ORTHO05D009238 3.1e-32 142.9 167 49.7
Sopen08g017220 Solanum pennellii HOM05D007323 ORTHO05D009238 4.0e-32 142.5 211 41.2
A09p54710 Brassica napus HOM05D007323 ORTHO05D009238 2.0e-31 140.2 165 47.9
arahy.Tifrunner.gnm1.ann1.287SRD Arachis hypogaea HOM05D007323 ORTHO05D009238 1.3e-30 137.5 199 44.2
Psat5g030560 Pisum sativum HOM05D007323 ORTHO05D009238 1.3e-30 137.5 178 48.3
EL10Ac2g03780 Beta vulgaris HOM05D007323 ORTHO05D009238 1.7e-30 137.1 153 49.0
Sc06g0001110 Simmondsia chinensis HOM05D007323 ORTHO05D009238 2.9e-30 136.3 189 42.3
Haze_18294 Corylus avellana HOM05D007323 ORTHO05D009238 1.2e-28 131.0 261 36.8
AUR62009079 Chenopodium quinoa HOM05D007323 ORTHO05D009238 1.6e-28 130.6 161 47.2
Eucgr.B01870 Eucalyptus grandis HOM05D007323 ORTHO05D009238 1.3e-27 127.5 133 56.4
Peaxi162Scf00486g01025 Petunia axillaris HOM05D007323 ORTHO05D009238 5.3e-24 115.5 130 52.3
CBR_g19268 Chara braunii HOM05D007323 ORTHO05D009238 4.5e-23 112.5 146 43.8
AUR62020587 Chenopodium quinoa HOM05D007323 ORTHO05D009238 3.2e-21 106.3 129 48.1
TAR636G1368 Trochodendron aralioides HOM05D007323 ORTHO05D009238 2.8e-17 93.2 97 52.6
Cre16.g684150 Chlamydomonas reinhardtii HOM05D007323 ORTHO05D009238 6.2e-17 92.0 173 38.7
MBI13_g42814_MAGBIO Magnolia biondii HOM05D007323 ORTHO05D009238 1.4e-16 90.9 110 50.9
CSS0001075 Camellia sinensis var. sinensis HOM05D007323 ORTHO05D009238 1.3e-14 84.3 103 45.6
CSS0018719 Camellia sinensis var. sinensis HOM05D007323 ORTHO05D009238 1.3e-14 84.3 103 45.6
Cpa.g.sc126.24 Carica papaya HOM05D007323 ORTHO05D009238 8.4e-14 81.6 102 46.1
MD08G1071400 Malus domestica HOM05D007323 ORTHO05D009238 1.5e-07 60.8 65 52.3
Os03g0176800 Oryza sativa ssp. japonica HOM05D009542 ORTHO05D294036 2.2e-06 57.0 92 35.9


User provided reference genes

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