Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 0.0e+00 1157.1 772 100.0
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 8.7e-164 581.6 890 55.8
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 7.6e-160 568.5 670 66.7
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 4.8e-146 522.7 785 55.4
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.9e-143 513.5 649 68.7
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 2.1e-141 507.3 794 56.4
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 1.0e-140 505.0 801 54.9
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 7.4e-139 498.8 840 48.0
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 1.3e-135 488.0 800 56.4
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 5.0e-135 486.1 803 54.8
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.4e-132 478.0 801 55.4
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 3.0e-132 476.9 913 45.1
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 3.9e-132 476.5 794 55.5
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 5.1e-132 476.1 795 54.0
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 1.5e-131 474.6 787 56.7
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 2.0e-131 474.2 797 52.3
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 2.6e-131 473.8 797 55.0
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 2.6e-131 473.8 801 53.3
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 3.3e-131 473.4 801 52.7
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 4.3e-131 473.0 811 54.1
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.3e-130 471.5 804 51.9
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 2.2e-130 470.7 814 54.7
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 6.3e-130 469.2 841 50.1
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 8.2e-130 468.8 806 54.6
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 1.8e-129 467.6 801 55.9
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 5.3e-129 466.1 756 54.6
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 1.5e-128 464.5 814 54.2
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 1.5e-128 464.5 803 54.3
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 2.0e-128 464.2 808 54.2
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 2.6e-128 463.8 804 50.4
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 2.6e-128 463.8 801 54.7
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 5.9e-128 462.6 797 54.5
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 2.9e-127 460.3 794 55.2
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 2.9e-127 460.3 837 52.6
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 5.0e-127 459.5 797 54.1
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 1.9e-126 457.6 816 52.3
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.2e-125 454.9 801 54.6
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 2.7e-125 453.8 804 54.2
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 3.6e-125 453.4 796 54.6
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 6.1e-125 452.6 805 54.3
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 2.3e-124 450.7 804 54.5
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 3.9e-124 449.9 789 55.0
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 5.2e-124 449.5 801 54.2
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 6.7e-124 449.1 811 45.0
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 2.6e-123 447.2 801 53.9
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 2.6e-123 447.2 804 53.1
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 9.7e-123 445.3 805 53.5
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 9.7e-123 445.3 811 54.0
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 2.8e-122 443.7 801 53.3
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 3.7e-122 443.4 801 51.7
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 4.8e-122 443.0 802 54.6
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 6.3e-122 442.6 807 53.8
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 1.1e-121 441.8 797 47.8
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 1.8e-121 441.0 800 53.8
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 2.4e-121 440.7 800 53.8
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 4.1e-121 439.9 804 53.5
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 5.3e-121 439.5 789 55.9
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 1.6e-120 438.0 796 49.6
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 2.0e-120 437.6 665 59.2
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 2.6e-120 437.2 806 53.0
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 5.9e-120 436.0 799 52.2
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 7.7e-120 435.6 800 52.1
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 1.0e-119 435.3 799 52.1
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 5.0e-119 433.0 802 52.5
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 1.1e-118 431.8 783 54.2
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 1.5e-118 431.4 800 53.1
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 1.9e-118 431.0 802 52.5
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 1.9e-118 431.0 802 53.7
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 1.9e-118 431.0 806 52.2
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 4.2e-118 429.9 820 50.4
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 5.5e-118 429.5 866 47.7
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 5.5e-118 429.5 790 51.6
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 7.2e-118 429.1 802 54.1
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 9.4e-118 428.7 800 53.4
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 8.0e-117 425.6 800 53.2
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 8.0e-117 425.6 801 52.9
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 8.0e-117 425.6 801 52.2
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 1.0e-116 425.2 800 53.4
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 1.0e-116 425.2 795 52.6
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 1.0e-116 425.2 788 53.8
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.0e-116 425.2 801 52.2
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 2.3e-116 424.1 805 53.2
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 3.0e-116 423.7 802 52.7
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 5.2e-116 422.9 827 52.6
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 6.7e-116 422.5 791 54.2
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 2.0e-115 421.0 800 53.0
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 2.0e-115 421.0 799 50.7
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 4.4e-115 419.9 801 53.7
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 9.7e-115 418.7 799 50.7
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 9.7e-115 418.7 804 49.8
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 2.8e-114 417.2 750 49.5
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 4.8e-114 416.4 800 47.5
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 2.4e-113 414.1 790 49.7
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 3.1e-113 413.7 792 52.7
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 5.3e-113 412.9 804 49.1
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 5.3e-113 412.9 818 52.4
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 7.0e-113 412.5 800 50.9
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 9.1e-113 412.1 627 60.3
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 1.6e-112 411.4 800 52.8
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 1.6e-112 411.4 805 52.2
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 3.5e-112 410.2 643 61.1
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 4.5e-112 409.8 693 55.0
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 1.3e-111 408.3 800 52.9
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 1.7e-111 407.9 801 49.4
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 6.5e-111 406.0 803 51.3
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 1.5e-110 404.8 796 51.5
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 4.7e-109 399.8 578 66.3
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 8.0e-109 399.1 822 50.2
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 5.2e-108 396.4 818 47.3
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 8.8e-108 395.6 774 52.7
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 2.0e-107 394.4 794 52.1
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 4.4e-107 393.3 790 51.5
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 4.4e-107 393.3 643 58.3
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 7.5e-107 392.5 786 47.3
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 1.7e-106 391.3 786 46.9
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 1.7e-106 391.3 786 46.9
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 2.8e-106 390.6 799 47.8
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 4.8e-106 389.8 801 50.8
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 6.3e-106 389.4 796 50.9
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 3.1e-105 387.1 684 50.9
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 4.1e-105 386.7 797 50.9
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 5.4e-105 386.3 796 50.9
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 5.4e-105 386.3 641 58.3
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 1.6e-104 384.8 796 48.2
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 3.5e-104 383.6 635 60.9
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 1.7e-103 381.3 800 50.6
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 2.9e-103 380.6 786 46.3
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 8.5e-103 379.0 646 55.1
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 2.5e-102 377.5 796 50.5
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 2.5e-102 377.5 796 50.5
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 2.7e-101 374.0 796 50.0
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 4.7e-101 373.2 796 50.3
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 4.7e-101 373.2 796 50.3
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 1.0e-100 372.1 787 49.4
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 1.4e-100 371.7 796 50.1
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 1.8e-100 371.3 790 50.5
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 1.8e-100 371.3 709 53.3
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 5.2e-100 369.8 792 50.1
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 1.7e-98 364.8 665 52.3
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 3.7e-98 363.6 800 47.6
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 7.0e-97 359.4 733 46.7
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 5.9e-96 356.3 791 50.7
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 1.8e-92 344.7 428 54.7
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 4.0e-92 343.6 796 43.5
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 8.9e-92 342.4 796 43.1
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 3.4e-91 340.5 789 44.4
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 5.4e-89 333.2 786 45.4
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.2e-88 332.0 683 49.6
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 2.1e-85 321.2 789 43.1
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 2.8e-85 320.9 588 51.4
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 5.8e-83 313.2 420 52.6
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 3.9e-79 300.4 746 43.2
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 2.3e-76 291.2 772 37.0
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 5.2e-76 290.0 683 49.9
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.3e-71 275.4 310 62.6
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 9.5e-70 269.2 393 59.5
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 2.6e-67 261.2 643 48.4
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 3.0e-63 247.7 696 43.0
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 2.2e-50 204.9 295 42.4
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 2.9e-50 204.5 654 47.4
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 1.3e-42 179.1 644 48.9
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 1.9e-41 175.3 320 59.1
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 3.2e-41 174.5 192 50.0
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 6.2e-37 160.2 309 43.0
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 2.1e-32 145.2 262 37.0
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.0e-26 126.3 114 51.8
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 3.9e-23 114.4 90 58.9
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 2.2e-21 108.6 187 35.8
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 3.8e-18 97.8 121 44.6
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 5.0e-18 97.4 57 73.7
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 3.0e-15 88.2 62 66.1
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 5.1e-15 87.4 212 33.0
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 1.5e-14 85.9 72 56.9
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 9.7e-14 83.2 69 59.4
Cre12.g525600 Chlamydomonas reinhardtii HOM05D003722 ORTHO05D004589 2.5e-09 68.6 356 23.3
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 3.9e-07 61.2 118 33.1
Sc09g0009810 Simmondsia chinensis HOM05D003722 ORTHO05D004589 6.7e-07 60.5 71 49.3
Aa31LG9G9050 Aethionema arabicum HOM05D000710 ORTHO05D000336 1.1e-06 59.7 134 32.1
BraA04t17203Z Brassica rapa HOM05D000710 ORTHO05D000336 2.0e-06 58.9 132 32.6
C08p50510 Brassica napus HOM05D000710 ORTHO05D000336 2.6e-06 58.5 134 31.3
BolC8t52578H Brassica oleracea HOM05D000710 ORTHO05D000336 2.6e-06 58.5 134 31.3
BcaC07g41991 Brassica carinata HOM05D000710 ORTHO05D000336 3.3e-06 58.2 134 31.3
THA.LOC104812336 Tarenaya hassleriana HOM05D000710 ORTHO05D000336 4.4e-06 57.8 134 29.9
Carub.0006s3340 Capsella rubella HOM05D000710 ORTHO05D000336 5.7e-06 57.4 94 35.1
BraA09t41971Z Brassica rapa HOM05D000710 ORTHO05D000336 9.7e-06 56.6 134 31.3
CSS0042417 Camellia sinensis var. sinensis HOM05D000710 ORTHO05D000336 9.7e-06 56.6 133 30.1
CSS0043964 Camellia sinensis var. sinensis HOM05D000710 ORTHO05D000336 9.7e-06 56.6 133 30.1


User provided reference genes

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