Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO238G0021 Selaginella moellendorffii HOM05D006243 ORTHO05D007688 1.3e-187 659.8 389 100.0
Pp3c16_1710 Physcomitrium patens HOM05D006243 ORTHO05D007688 2.5e-50 203.8 326 51.8
Pp3c5_8230 Physcomitrium patens HOM05D006243 ORTHO05D007688 3.4e-47 193.4 325 50.8
Pp3c25_7980 Physcomitrium patens HOM05D006243 ORTHO05D007688 4.4e-47 193.0 325 53.2
Mapoly0055s0114 Marchantia polymorpha HOM05D006243 ORTHO05D007688 8.3e-46 188.7 383 43.3
AagrBONN_evm.TU.Sc2ySwM_117.2468 Anthoceros agrestis HOM05D006243 ORTHO05D007688 3.5e-44 183.3 263 43.0
TPR.G8275 Trifolium pratense HOM05D006243 ORTHO05D007688 1.1e-42 178.3 257 42.0
Hund13108 Selenicereus undatus HOM05D006243 ORTHO05D007688 1.5e-42 177.9 272 40.4
Medtr5g078290 Medicago truncatula HOM05D006243 ORTHO05D007688 9.4e-42 175.3 336 41.7
CARHR058210 Cardamine hirsuta HOM05D006243 ORTHO05D007688 2.1e-41 174.1 246 43.1
Glyma.02G245300 Glycine max HOM05D006243 ORTHO05D007688 3.6e-41 173.3 282 38.7
Eucgr.J01597 Eucalyptus grandis HOM05D006243 ORTHO05D007688 4.7e-41 172.9 280 38.2
Lalb_Chr10g0104381 Lupinus albus HOM05D006243 ORTHO05D007688 6.1e-41 172.6 248 42.7
EL10Ac2g03168 Beta vulgaris HOM05D006243 ORTHO05D007688 8.0e-41 172.2 241 41.9
CiPaw.03G071500 Carya illinoinensis HOM05D006243 ORTHO05D007688 8.0e-41 172.2 248 43.5
LjContig00141g0011202 Lotus japonicus HOM05D006243 ORTHO05D007688 1.0e-40 171.8 336 38.4
Sc10g0004760 Simmondsia chinensis HOM05D006243 ORTHO05D007688 1.0e-40 171.8 312 45.5
Atru.chr1.1900 Acer truncatum HOM05D006243 ORTHO05D007688 1.4e-40 171.4 249 42.2
Phvul.008G235800 Phaseolus vulgaris HOM05D006243 ORTHO05D007688 2.3e-40 170.6 257 40.9
Sp5g21350 Schrenkiella parvula HOM05D006243 ORTHO05D007688 2.3e-40 170.6 243 41.2
BcaC03g14742 Brassica carinata HOM05D006243 ORTHO05D007688 3.0e-40 170.2 251 40.6
BolC2t08324H Brassica oleracea HOM05D006243 ORTHO05D007688 3.0e-40 170.2 251 40.6
Carub.0002s1234 Capsella rubella HOM05D006243 ORTHO05D007688 3.0e-40 170.2 244 41.8
Aa31LG2G3000 Aethionema arabicum HOM05D006243 ORTHO05D007688 5.2e-40 169.5 245 42.4
Oeu012257.1 Olea europaea HOM05D006243 ORTHO05D007688 5.2e-40 169.5 243 42.0
AT1G66330 Arabidopsis thaliana HOM05D006243 ORTHO05D007688 6.8e-40 169.1 246 41.9
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 6.8e-40 169.1 243 41.2
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 6.8e-40 169.1 243 41.2
BraA02t06418Z Brassica rapa HOM05D006243 ORTHO05D007688 6.8e-40 169.1 243 41.2
Cpa.g.sc67.47 Carica papaya HOM05D006243 ORTHO05D007688 6.8e-40 169.1 257 40.1
THA.LOC104805617 Tarenaya hassleriana HOM05D006243 ORTHO05D007688 6.8e-40 169.1 243 43.2
BcaB03g15275 Brassica carinata HOM05D006243 ORTHO05D007688 8.8e-40 168.7 245 41.6
CsaV3_3G020810 Cucumis sativus L. HOM05D006243 ORTHO05D007688 8.8e-40 168.7 249 42.6
SEGI_26344 Sequoiadendron giganteum HOM05D006243 ORTHO05D007688 1.2e-39 168.3 259 40.9
CSS0038083 Camellia sinensis var. sinensis HOM05D006243 ORTHO05D007688 1.5e-39 167.9 245 42.0
Manes.01G117900 Manihot esculenta HOM05D006243 ORTHO05D007688 2.0e-39 167.5 271 39.5
Haze_14258 Corylus avellana HOM05D006243 ORTHO05D007688 2.6e-39 167.2 333 42.9
BcaB05g24167 Brassica carinata HOM05D006243 ORTHO05D007688 3.4e-39 166.8 243 40.3
CANSAT64G2718 Cannabis sativa HOM05D006243 ORTHO05D007688 3.4e-39 166.8 285 37.5
GSVIVG01030779001 Vitis vinifera HOM05D006243 ORTHO05D007688 4.4e-39 166.4 254 39.8
Cfa007817 Carpinus fangiana HOM05D006243 ORTHO05D007688 7.5e-39 165.6 261 39.8
AL2G24050 Arabidopsis lyrata HOM05D006243 ORTHO05D007688 9.8e-39 165.2 246 41.5
Potri.017G129100 Populus trichocarpa HOM05D006243 ORTHO05D007688 9.8e-39 165.2 248 40.7
CAN.G222.23 Capsicum annuum HOM05D006243 ORTHO05D007688 1.7e-38 164.5 244 41.0
COL.COLO4_10159 Corchorus olitorius HOM05D006243 ORTHO05D007688 1.7e-38 164.5 312 42.3
Lalb_Chr17g0346141 Lupinus albus HOM05D006243 ORTHO05D007688 1.7e-38 164.5 240 42.1
Sabra17G0107600 Salix brachista HOM05D006243 ORTHO05D007688 1.7e-38 164.5 248 41.1
TAR629G1693 Trochodendron aralioides HOM05D006243 ORTHO05D007688 1.7e-38 164.5 249 42.2
Zm00001eb165460 Zea mays HOM05D006243 ORTHO05D007688 1.7e-38 164.5 246 41.1
BraA07t30960Z Brassica rapa HOM05D006243 ORTHO05D007688 2.2e-38 164.1 246 41.1
Gohir.A07G078300 Gossypium hirsutum HOM05D006243 ORTHO05D007688 2.2e-38 164.1 245 41.2
Gorai.001G088700 Gossypium raimondii HOM05D006243 ORTHO05D007688 2.2e-38 164.1 245 41.2
PSO017G3733 Papaver somniferum HOM05D006243 ORTHO05D007688 2.2e-38 164.1 287 36.9
Peaxi162Scf00305g00613 Petunia axillaris HOM05D006243 ORTHO05D007688 2.2e-38 164.1 244 39.8
AUR62018213 Chenopodium quinoa HOM05D006243 ORTHO05D007688 2.8e-38 163.7 252 40.5
Thecc.04G115200 Theobroma cacao HOM05D006243 ORTHO05D007688 2.8e-38 163.7 245 41.6
Aqoxy3G00051 Aquilegia oxysepala HOM05D006243 ORTHO05D007688 3.7e-38 163.3 249 41.8
AUR62038703 Chenopodium quinoa HOM05D006243 ORTHO05D007688 3.7e-38 163.3 252 40.5
PSO478G0940 Papaver somniferum HOM05D006243 ORTHO05D007688 3.7e-38 163.3 286 36.4
Migut.H02264 Erythranthe guttata HOM05D006243 ORTHO05D007688 4.9e-38 162.9 347 38.0
Nn4g24254 Nelumbo nucifera HOM05D006243 ORTHO05D007688 4.9e-38 162.9 242 41.3
ClCG05G011500 Citrullus lanatus HOM05D006243 ORTHO05D007688 6.3e-38 162.5 249 41.8
MD09G1263800 Malus domestica HOM05D006243 ORTHO05D007688 6.3e-38 162.5 249 41.0
TWI53G0799 Tripterygium wilfordii HOM05D006243 ORTHO05D007688 6.3e-38 162.5 316 44.0
BcaC08g46068 Brassica carinata HOM05D006243 ORTHO05D007688 8.3e-38 162.2 253 39.1
Solyc11g011170.2 Solanum lycopersicum HOM05D006243 ORTHO05D007688 8.3e-38 162.2 244 41.0
Duzib133G1335 Durio zibethinus HOM05D006243 ORTHO05D007688 1.1e-37 161.8 254 40.2
MD17G1259100 Malus domestica HOM05D006243 ORTHO05D007688 1.1e-37 161.8 278 38.8
Oeu032326.2 Olea europaea HOM05D006243 ORTHO05D007688 1.1e-37 161.8 242 41.3
Prupe.3G161300 Prunus persica HOM05D006243 ORTHO05D007688 1.1e-37 161.8 249 40.6
PGSC0003DMG402015686 Solanum tuberosum HOM05D006243 ORTHO05D007688 1.1e-37 161.8 257 39.7
arahy.Tifrunner.gnm1.ann1.Y3W4B5 Arachis hypogaea HOM05D006243 ORTHO05D007688 1.4e-37 161.4 285 36.8
Gohir.D07G083100 Gossypium hirsutum HOM05D006243 ORTHO05D007688 1.4e-37 161.4 245 40.8
ATR0317G069 Amborella trichopoda HOM05D006243 ORTHO05D007688 1.8e-37 161.0 254 39.4
vmacro07692 Vaccinium macrocarpon HOM05D006243 ORTHO05D007688 1.8e-37 161.0 275 37.5
Cc07_g13520 Coffea canephora HOM05D006243 ORTHO05D007688 3.1e-37 160.2 247 39.3
MELO3C020192.2 Cucumis melo HOM05D006243 ORTHO05D007688 3.1e-37 160.2 249 41.0
Sopen11g005930 Solanum pennellii HOM05D006243 ORTHO05D007688 3.1e-37 160.2 244 40.6
HPP92_027416 Vanilla planifolia HOM05D006243 ORTHO05D007688 3.1e-37 160.2 246 39.0
Rhsim10G0177000 Rhododendron simsii HOM05D006243 ORTHO05D007688 4.1e-37 159.8 245 39.6
A07p33290 Brassica napus HOM05D006243 ORTHO05D007688 5.4e-37 159.5 247 40.9
Ciclev10011587m.g Citrus clementina HOM05D006243 ORTHO05D007688 7.0e-37 159.1 258 38.0
Actinidia06497 Actinidia chinensis HOM05D006243 ORTHO05D007688 1.6e-36 157.9 244 40.2
Os05g0148700 Oryza sativa ssp. japonica HOM05D006243 ORTHO05D007688 1.6e-36 157.9 247 39.3
C06p39620 Brassica napus HOM05D006243 ORTHO05D007688 2.0e-36 157.5 254 39.0
BolC6t39055H Brassica oleracea HOM05D006243 ORTHO05D007688 2.0e-36 157.5 254 39.0
SalBow3G2874 Salvia bowleyana HOM05D006243 ORTHO05D007688 2.0e-36 157.5 270 36.7
CDE04G1800 Ceratophyllum demersum HOM05D006243 ORTHO05D007688 2.7e-36 157.1 267 36.7
RcHm_v2.0_Chr3g0493131 Rosa chinensis HOM05D006243 ORTHO05D007688 3.5e-36 156.8 252 38.5
MSTRG.23392 Avicennia marina HOM05D006243 ORTHO05D007688 4.5e-36 156.4 244 38.1
FvH4_1g28740 Fragaria vesca HOM05D006243 ORTHO05D007688 1.0e-35 155.2 252 37.3
FAN19G0552 Fragaria x ananassa HOM05D006243 ORTHO05D007688 1.0e-35 155.2 252 37.3
FAN28G0309 Fragaria x ananassa HOM05D006243 ORTHO05D007688 1.3e-35 154.8 261 36.0
Lj4A263G87 Lonicera japonica HOM05D006243 ORTHO05D007688 3.8e-35 153.3 250 39.6
FAN26G0580 Fragaria x ananassa HOM05D006243 ORTHO05D007688 8.6e-35 152.1 252 36.5
ECA246G3278 Erigeron canadensis HOM05D006243 ORTHO05D007688 1.1e-34 151.8 245 37.1
Ca_05826_v3 Cicer arietinum L. HOM05D006243 ORTHO05D007688 3.3e-34 150.2 236 41.1
unitig_736.g22596 Utricularia gibba HOM05D006243 ORTHO05D007688 5.6e-34 149.4 248 36.3
Lsat_1_v5_gn_3_64500 Lactuca sativa HOM05D006243 ORTHO05D007688 9.5e-34 148.7 245 38.0
HanXRQChr13g0418351 Helianthus annuus HOM05D006243 ORTHO05D007688 1.2e-33 148.3 281 35.2
arahy.Tifrunner.gnm1.ann1.SFD8TD Arachis hypogaea HOM05D006243 ORTHO05D007688 1.6e-33 147.9 236 39.8
CBR_g27960 Chara braunii HOM05D006243 ORTHO05D007688 2.1e-33 147.5 335 45.7
Glyma.14G215400 Glycine max HOM05D006243 ORTHO05D007688 1.0e-32 145.2 231 39.4
PGR004G2672 Punica granatum HOM05D006243 ORTHO05D007688 8.9e-32 142.1 232 38.8
DCAR_014173 Daucus carota HOM05D006243 ORTHO05D007688 1.2e-31 141.7 249 37.3
Thhalv10018612m.g Eutrema salsugineum HOM05D006243 ORTHO05D007688 5.4e-29 132.9 178 41.6
Nitab4.5_0000201g0240 Nicotiana tabacum HOM05D006243 ORTHO05D007688 7.8e-28 129.0 238 37.4
MD17G1258600 Malus domestica HOM05D006243 ORTHO05D007688 3.3e-26 123.6 203 41.4
Sed0013436 Sechium edule HOM05D006243 ORTHO05D007688 4.3e-26 123.2 177 41.8
SGA_v2.0_scaffold108G30955 Striga asiatica HOM05D006243 ORTHO05D007688 9.8e-23 112.1 241 32.8
Ah.10g032360 Amaranthus hybridus HOM05D006243 ORTHO05D007688 5.4e-21 106.3 236 33.5
Psat2g047960 Pisum sativum HOM05D006243 ORTHO05D007688 6.0e-20 102.8 144 43.1
Actinidia17213 Actinidia chinensis HOM05D006243 ORTHO05D007688 2.5e-18 97.4 140 40.7
VMungo0647G1521 Vigna mungo HOM05D006243 ORTHO05D007688 3.3e-18 97.1 153 40.5
Nitab4.5_0009518g0020 Nicotiana tabacum HOM05D006243 ORTHO05D007688 9.5e-18 95.5 238 32.8
VMungo0647G1427 Vigna mungo HOM05D006243 ORTHO05D007688 1.1e-13 82.0 111 43.2
Dinv28209 Davidia involucrata HOM05D006243 ORTHO05D007688 2.3e-11 74.3 68 52.9
RcHm_v2.0_Chr7g0216651 Rosa chinensis HOM05D006243 ORTHO05D007688 1.6e-09 68.2 100 42.0
Lsat_1_v5_gn_2_20381 Lactuca sativa HOM05D006243 ORTHO05D007688 8.1e-09 65.9 117 35.0
Lsat_1_v5_gn_9_50281 Lactuca sativa HOM05D006243 ORTHO05D007688 1.3e-06 58.5 68 38.2


User provided reference genes

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