Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO236G0037 Selaginella moellendorffii HOM05D006519 ORTHO05D008306 4.5e-121 438.0 225 100.0
Pp3c21_11830 Physcomitrium patens HOM05D006519 ORTHO05D008306 3.9e-72 275.4 226 62.8
Mapoly0003s0145 Marchantia polymorpha HOM05D006519 ORTHO05D008306 1.1e-71 273.9 230 63.9
RcHm_v2.0_Chr7g0179701 Rosa chinensis HOM05D006519 ORTHO05D008306 8.9e-69 264.2 226 58.0
TAR629G1196 Trochodendron aralioides HOM05D006519 ORTHO05D008306 1.5e-68 263.5 225 59.1
Potri.012G076100 Populus trichocarpa HOM05D006519 ORTHO05D008306 3.4e-68 262.3 229 55.0
GSVIVG01007824001 Vitis vinifera HOM05D006519 ORTHO05D008306 3.4e-68 262.3 225 58.2
FvH4_5g16400 Fragaria vesca HOM05D006519 ORTHO05D008306 5.8e-68 261.5 227 57.7
FAN18G3891 Fragaria x ananassa HOM05D006519 ORTHO05D008306 5.8e-68 261.5 227 57.7
ECA232G3316 Erigeron canadensis HOM05D006519 ORTHO05D008306 9.9e-68 260.8 225 57.8
FAN13G2537 Fragaria x ananassa HOM05D006519 ORTHO05D008306 9.9e-68 260.8 227 57.7
Nitab4.5_0003386g0010 Nicotiana tabacum HOM05D006519 ORTHO05D008306 1.3e-67 260.4 226 59.3
Sc12g0005660 Simmondsia chinensis HOM05D006519 ORTHO05D008306 1.7e-67 260.0 227 55.9
CAN.G853.13 Capsicum annuum HOM05D006519 ORTHO05D008306 2.2e-67 259.6 229 58.1
MBI14_g12785_MAGBIO Magnolia biondii HOM05D006519 ORTHO05D008306 2.9e-67 259.2 225 57.8
Sabra12G0054300 Salix brachista HOM05D006519 ORTHO05D008306 2.9e-67 259.2 229 55.0
PGSC0003DMG400024585 Solanum tuberosum HOM05D006519 ORTHO05D008306 2.9e-67 259.2 226 58.4
ATR0314G030 Amborella trichopoda HOM05D006519 ORTHO05D008306 3.8e-67 258.8 222 58.6
Lsat_1_v5_gn_4_73480 Lactuca sativa HOM05D006519 ORTHO05D008306 4.9e-67 258.5 227 55.9
FAN08G1114 Fragaria x ananassa HOM05D006519 ORTHO05D008306 6.4e-67 258.1 227 56.8
Sopen03g032910 Solanum pennellii HOM05D006519 ORTHO05D008306 6.4e-67 258.1 226 58.8
Haze_07439 Corylus avellana HOM05D006519 ORTHO05D008306 8.4e-67 257.7 225 57.8
Solyc03g113860.2 Solanum lycopersicum HOM05D006519 ORTHO05D008306 8.4e-67 257.7 226 58.8
Gorai.012G002000 Gossypium raimondii HOM05D006519 ORTHO05D008306 1.4e-66 256.9 225 56.4
CiPaw.11G031700 Carya illinoinensis HOM05D006519 ORTHO05D008306 1.9e-66 256.5 226 57.1
Ciclev10021480m.g Citrus clementina HOM05D006519 ORTHO05D008306 3.2e-66 255.8 226 56.2
THA.LOC104809258 Tarenaya hassleriana HOM05D006519 ORTHO05D008306 3.2e-66 255.8 229 54.6
CANSAT80G0931 Cannabis sativa HOM05D006519 ORTHO05D008306 5.4e-66 255.0 225 56.9
MD06G1181000 Malus domestica HOM05D006519 ORTHO05D008306 5.4e-66 255.0 225 57.3
Prupe.5G179000 Prunus persica HOM05D006519 ORTHO05D008306 9.3e-66 254.2 226 58.0
Gohir.A05G415200 Gossypium hirsutum HOM05D006519 ORTHO05D008306 1.6e-65 253.4 223 56.1
Hund02710 Selenicereus undatus HOM05D006519 ORTHO05D008306 2.1e-65 253.1 226 57.5
Ah.11g046180 Amaranthus hybridus HOM05D006519 ORTHO05D008306 3.5e-65 252.3 226 55.3
Nn3g17016 Nelumbo nucifera HOM05D006519 ORTHO05D008306 3.5e-65 252.3 225 55.1
Gohir.D04G001000 Gossypium hirsutum HOM05D006519 ORTHO05D008306 6.0e-65 251.5 225 56.4
HanXRQChr09g0271821 Helianthus annuus HOM05D006519 ORTHO05D008306 1.3e-64 250.4 225 55.1
Actinidia34959 Actinidia chinensis HOM05D006519 ORTHO05D008306 1.7e-64 250.0 225 56.0
Lj4g0003537 Lotus japonicus HOM05D006519 ORTHO05D008306 3.0e-64 249.2 225 55.1
PSO591G0501 Papaver somniferum HOM05D006519 ORTHO05D008306 3.0e-64 249.2 257 51.8
Psat0s1227g0160 Pisum sativum HOM05D006519 ORTHO05D008306 3.9e-64 248.8 225 55.1
TPR.G37507 Trifolium pratense HOM05D006519 ORTHO05D008306 8.7e-64 247.7 225 54.7
Oeu016332.2 Olea europaea HOM05D006519 ORTHO05D008306 1.9e-63 246.5 225 55.6
Thecc.03G004500 Theobroma cacao HOM05D006519 ORTHO05D008306 2.5e-63 246.1 223 56.5
A03p27660 Brassica napus HOM05D006519 ORTHO05D008306 3.3e-63 245.7 226 54.4
BraA03t11979Z Brassica rapa HOM05D006519 ORTHO05D008306 3.3e-63 245.7 226 54.4
CSS0018091 Camellia sinensis var. sinensis HOM05D006519 ORTHO05D008306 3.3e-63 245.7 221 55.7
Cc04_g13570 Coffea canephora HOM05D006519 ORTHO05D008306 3.3e-63 245.7 226 56.6
DCAR_031285 Daucus carota HOM05D006519 ORTHO05D008306 3.3e-63 245.7 225 53.8
AT5G50110 Arabidopsis thaliana HOM05D006519 ORTHO05D008306 4.3e-63 245.4 229 54.6
CSS0037543 Camellia sinensis var. sinensis HOM05D006519 ORTHO05D008306 4.3e-63 245.4 221 55.7
PGR083G2560 Punica granatum HOM05D006519 ORTHO05D008306 4.3e-63 245.4 222 55.9
BcaC01g04830 Brassica carinata HOM05D006519 ORTHO05D008306 5.6e-63 245.0 226 54.0
Carub.0008s1012 Capsella rubella HOM05D006519 ORTHO05D008306 5.6e-63 245.0 229 53.7
BolC3t15659H Brassica oleracea HOM05D006519 ORTHO05D008306 7.3e-63 244.6 226 53.5
MSTRG.11426 Avicennia marina HOM05D006519 ORTHO05D008306 9.6e-63 244.2 217 59.0
BcaB01g02918 Brassica carinata HOM05D006519 ORTHO05D008306 9.6e-63 244.2 229 53.7
Migut.I00056 Erythranthe guttata HOM05D006519 ORTHO05D008306 1.3e-62 243.8 225 55.1
Lalb_Chr07g0182571 Lupinus albus HOM05D006519 ORTHO05D008306 1.3e-62 243.8 225 53.8
Glyma.05G033800 Glycine max HOM05D006519 ORTHO05D008306 1.6e-62 243.4 225 52.9
CARHR258520 Cardamine hirsuta HOM05D006519 ORTHO05D008306 2.1e-62 243.0 229 53.7
C03p33370 Brassica napus HOM05D006519 ORTHO05D008306 4.8e-62 241.9 226 53.1
Ca_21889_v3 Cicer arietinum L. HOM05D006519 ORTHO05D008306 4.8e-62 241.9 217 54.8
AUR62008282 Chenopodium quinoa HOM05D006519 ORTHO05D008306 6.2e-62 241.5 222 54.5
Medtr4g106410 Medicago truncatula HOM05D006519 ORTHO05D008306 1.4e-61 240.4 225 53.3
TWI81G0852 Tripterygium wilfordii HOM05D006519 ORTHO05D008306 1.4e-61 240.4 225 52.9
Sp6g11980 Schrenkiella parvula HOM05D006519 ORTHO05D008306 5.3e-61 238.4 229 52.4
Duzib068G0259 Durio zibethinus HOM05D006519 ORTHO05D008306 9.0e-61 237.7 225 53.3
CsaV3_1G008220 Cucumis sativus L. HOM05D006519 ORTHO05D008306 2.0e-60 236.5 226 54.4
Eucgr.B00339 Eucalyptus grandis HOM05D006519 ORTHO05D008306 2.0e-60 236.5 203 58.1
Aa31sc174G50 Aethionema arabicum HOM05D006519 ORTHO05D008306 7.6e-60 234.6 240 50.8
Sed0010209 Sechium edule HOM05D006519 ORTHO05D008306 1.7e-59 233.4 226 54.9
Peaxi162Scf00017g02523 Petunia axillaris HOM05D006519 ORTHO05D008306 2.2e-59 233.0 204 58.3
MELO3C002238.2 Cucumis melo HOM05D006519 ORTHO05D008306 4.9e-59 231.9 226 53.5
Zm00001eb279990 Zea mays HOM05D006519 ORTHO05D008306 4.9e-59 231.9 224 52.2
SalBow5G4476 Salvia bowleyana HOM05D006519 ORTHO05D008306 5.4e-58 228.4 270 48.1
SalBow5G0752 Salvia bowleyana HOM05D006519 ORTHO05D008306 7.1e-58 228.0 270 47.8
arahy.Tifrunner.gnm1.ann1.L198ZR Arachis hypogaea HOM05D006519 ORTHO05D008306 1.2e-57 227.3 227 51.1
arahy.Tifrunner.gnm1.ann1.IBQC5J Arachis hypogaea HOM05D006519 ORTHO05D008306 1.6e-57 226.9 228 50.4
ClCG01G014120 Citrullus lanatus HOM05D006519 ORTHO05D008306 2.3e-56 223.0 239 51.5
AL8G24100 Arabidopsis lyrata HOM05D006519 ORTHO05D008306 5.6e-55 218.4 203 55.2
Atru.chr9.2404 Acer truncatum HOM05D006519 ORTHO05D008306 1.6e-54 216.9 225 51.1
EL10Ac5g10829 Beta vulgaris HOM05D006519 ORTHO05D008306 2.8e-54 216.1 277 43.3
Phvul.003G197000 Phaseolus vulgaris HOM05D006519 ORTHO05D008306 1.4e-53 213.8 191 55.0
Thhalv10014373m.g Eutrema salsugineum HOM05D006519 ORTHO05D008306 5.3e-53 211.8 229 49.3
SGA_v2.0_scaffold467G52031 Striga asiatica HOM05D006519 ORTHO05D008306 1.7e-51 206.8 187 57.8
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 1.1e-50 204.1 189 54.0
COL.COLO4_04635 Corchorus olitorius HOM05D006519 ORTHO05D008306 4.2e-50 202.2 188 55.3
AUR62031043 Chenopodium quinoa HOM05D006519 ORTHO05D008306 1.9e-47 193.4 171 55.6
AagrBONN_evm.TU.Sc2ySwM_228.2029 Anthoceros agrestis HOM05D006519 ORTHO05D008306 1.3e-46 190.7 174 55.2
Rhsim12G0161700 Rhododendron simsii HOM05D006519 ORTHO05D008306 3.1e-45 186.0 223 48.9
Cre09.g394584 Chlamydomonas reinhardtii HOM05D006519 ORTHO05D008306 2.0e-44 183.3 299 38.5
Hma1.2p1_0002F.1_g002810 Hydrangea macrophylla HOM05D006519 ORTHO05D008306 2.5e-42 176.4 149 58.4
Lj9C454G3 Lonicera japonica HOM05D006519 ORTHO05D008306 1.2e-41 174.1 225 42.2
MCO15G300 Micromonas commoda HOM05D006519 ORTHO05D008306 3.0e-40 169.5 234 43.6
Manes.06G100700 Manihot esculenta HOM05D006519 ORTHO05D008306 3.7e-38 162.5 148 57.4
MD14G1186900 Malus domestica HOM05D006519 ORTHO05D008306 1.8e-37 160.2 163 55.2
vmacro16588 Vaccinium macrocarpon HOM05D006519 ORTHO05D008306 3.1e-37 159.5 172 50.6
Nitab4.5_0001642g0020 Nicotiana tabacum HOM05D006519 ORTHO05D008306 1.7e-35 153.7 131 61.1
HPP92_010835 Vanilla planifolia HOM05D006519 ORTHO05D008306 8.7e-32 141.4 162 46.9
MD14G1186100 Malus domestica HOM05D006519 ORTHO05D008306 5.7e-31 138.7 167 45.5
SEGI_15669 Sequoiadendron giganteum HOM05D006519 ORTHO05D008306 7.4e-31 138.3 125 54.4
Hma1.2p1_0002F.1_g002800 Hydrangea macrophylla HOM05D006519 ORTHO05D008306 1.3e-30 137.5 126 51.6
MD13G1183500 Malus domestica HOM05D006519 ORTHO05D008306 4.1e-29 132.5 122 53.3
VMungo1215G1861 Vigna mungo HOM05D006519 ORTHO05D008306 3.4e-28 129.4 171 43.3
Os06g0239000 Oryza sativa ssp. japonica HOM05D006519 ORTHO05D008306 2.5e-23 113.2 98 55.1
PRCOL_00000545 Prasinoderma coloniale HOM05D006519 ORTHO05D008306 3.7e-22 109.4 221 35.3
Glyma.17G093302 Glycine max HOM05D006519 ORTHO05D008306 4.8e-22 109.0 100 55.0
Cpa.g.sc35.56 Carica papaya HOM05D006519 ORTHO05D008306 3.1e-21 106.3 100 52.0
CDE06G0478 Ceratophyllum demersum HOM05D006519 ORTHO05D008306 5.3e-21 105.5 84 58.3
Actinidia19081 Actinidia chinensis HOM05D006519 ORTHO05D008306 3.4e-20 102.8 138 44.2
C05p16930 Brassica napus HOM05D006519 ORTHO05D008306 9.4e-18 94.7 96 45.8
arahy.Tifrunner.gnm1.ann1.KZGX7R Arachis hypogaea HOM05D006519 ORTHO05D008306 2.1e-17 93.6 116 43.1
arahy.Tifrunner.gnm1.ann1.J4WABN Arachis hypogaea HOM05D006519 ORTHO05D008306 3.0e-16 89.7 97 46.4
Nitab4.5_0001642g0010 Nicotiana tabacum HOM05D006519 ORTHO05D008306 8.8e-16 88.2 86 53.5
HanXRQChr11g0328331 Helianthus annuus HOM05D006519 ORTHO05D008306 1.5e-15 87.4 85 50.6
CBR_g30328 Chara braunii HOM05D000019 ORTHO05D000048 4.1e-13 79.3 96 43.8
arahy.Tifrunner.gnm1.ann1.9L22J7 Arachis hypogaea HOM05D006519 ORTHO05D014446 2.6e-12 76.6 109 40.4
BcaC05g25762 Brassica carinata HOM05D006519 ORTHO05D008306 2.5e-10 70.1 77 44.2
SEGI_16810 Sequoiadendron giganteum HOM05D006519 ORTHO05D008306 1.6e-09 67.4 50 64.0
Potri.015G071001 Populus trichocarpa HOM05D006519 ORTHO05D008306 6.7e-08 62.0 54 57.4
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 3.3e-07 59.7 86 37.2
arahy.Tifrunner.gnm1.ann1.RNN7F2 Arachis hypogaea HOM05D006519 ORTHO05D008306 4.4e-07 59.3 77 40.3
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 2.8e-06 56.6 67 43.3
arahy.Tifrunner.gnm1.ann1.PY279F Arachis hypogaea HOM05D006519 ORTHO05D008306 3.7e-06 56.2 66 47.0


User provided reference genes

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