Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 7.4e-133 477.2 249 100.0
AagrBONN_evm.TU.Sc2ySwM_117.326 Anthoceros agrestis HOM05D005250 ORTHO05D006342 1.6e-66 256.9 226 57.1
Mapoly0009s0086 Marchantia polymorpha HOM05D005250 ORTHO05D006342 1.0e-65 254.2 224 56.7
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 1.5e-61 240.4 236 52.5
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 2.0e-61 240.0 234 52.6
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 3.4e-61 239.2 241 49.8
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 4.5e-61 238.8 215 54.0
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 3.2e-59 232.6 229 49.8
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 4.2e-59 232.3 215 52.6
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 4.2e-59 232.3 245 49.0
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 4.2e-59 232.3 237 51.1
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 7.1e-59 231.5 238 50.0
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 9.3e-59 231.1 234 49.1
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 9.3e-59 231.1 231 49.4
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 1.2e-58 230.7 242 49.2
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 1.2e-58 230.7 230 49.6
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 2.1e-58 229.9 230 49.6
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 2.7e-58 229.6 231 49.8
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 3.5e-58 229.2 239 46.4
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 3.5e-58 229.2 231 48.9
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 4.6e-58 228.8 231 48.1
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 4.6e-58 228.8 237 49.4
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 6.0e-58 228.4 234 47.9
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 7.9e-58 228.0 237 49.8
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 7.9e-58 228.0 230 49.6
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 7.9e-58 228.0 234 49.6
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 1.3e-57 227.3 232 50.0
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 1.3e-57 227.3 236 48.7
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 1.8e-57 226.9 226 49.6
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 1.8e-57 226.9 226 49.6
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 1.8e-57 226.9 237 48.1
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 1.8e-57 226.9 236 48.7
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 2.3e-57 226.5 240 47.5
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 2.3e-57 226.5 232 49.1
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 2.3e-57 226.5 221 49.8
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 3.0e-57 226.1 233 49.8
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 3.0e-57 226.1 236 48.7
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 3.9e-57 225.7 234 48.3
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 3.9e-57 225.7 234 49.1
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 5.1e-57 225.3 226 49.6
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 5.1e-57 225.3 231 47.2
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 8.7e-57 224.6 226 49.1
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 8.7e-57 224.6 226 49.1
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 8.7e-57 224.6 231 47.6
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 8.7e-57 224.6 228 50.4
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 8.7e-57 224.6 235 50.2
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 1.1e-56 224.2 238 46.6
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 1.1e-56 224.2 231 48.5
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 1.1e-56 224.2 238 48.7
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 1.1e-56 224.2 235 49.8
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 1.1e-56 224.2 237 49.8
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 1.1e-56 224.2 247 47.4
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 2.5e-56 223.0 234 48.7
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 4.3e-56 222.2 215 51.2
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 4.3e-56 222.2 203 52.2
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 4.3e-56 222.2 234 46.2
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 5.6e-56 221.9 231 48.5
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 5.6e-56 221.9 231 48.1
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 5.6e-56 221.9 224 47.8
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 5.6e-56 221.9 240 47.5
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 7.4e-56 221.5 231 48.5
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 9.6e-56 221.1 226 48.2
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 9.6e-56 221.1 228 46.5
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 1.3e-55 220.7 241 48.1
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 2.1e-55 219.9 231 49.8
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 2.8e-55 219.5 264 45.5
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 3.7e-55 219.2 241 46.9
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 3.7e-55 219.2 238 47.5
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 3.7e-55 219.2 235 46.4
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 6.2e-55 218.4 221 48.4
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 6.2e-55 218.4 252 46.8
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 8.1e-55 218.0 229 48.9
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 1.1e-54 217.6 231 48.9
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 1.8e-54 216.9 210 49.0
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 2.4e-54 216.5 234 47.0
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 6.9e-54 214.9 226 47.3
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 6.9e-54 214.9 250 46.8
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 1.2e-53 214.2 203 51.2
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 1.5e-53 213.8 229 46.3
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 2.0e-53 213.4 202 50.0
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 3.4e-53 212.6 233 45.5
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 7.6e-53 211.5 232 46.6
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 1.3e-52 210.7 219 49.3
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 1.3e-52 210.7 242 45.5
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 1.3e-52 210.7 229 46.3
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 2.2e-52 209.9 218 49.1
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 4.9e-52 208.8 240 45.0
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 1.1e-51 207.6 225 47.6
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 1.9e-51 206.8 231 47.6
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 2.4e-51 206.5 232 48.3
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 1.1e-48 197.6 228 45.2
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 3.1e-46 189.5 177 52.0
MBI19_g20787_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 9.0e-46 188.0 228 45.6
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 2.6e-45 186.4 204 45.6
BcaC09g49168 Brassica carinata HOM05D005250 ORTHO05D006342 2.9e-44 183.0 209 45.0
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 4.9e-44 182.2 177 48.0
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 8.4e-44 181.4 269 39.8
vmacro10476 Vaccinium macrocarpon HOM05D005250 ORTHO05D006342 1.1e-43 181.0 220 44.1
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 1.4e-43 180.6 239 41.8
SHI16015 Sapria himalayana HOM05D005250 ORTHO05D006342 1.4e-43 180.6 191 48.7
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 4.2e-43 179.1 255 40.0
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 1.6e-42 177.2 226 42.5
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 3.5e-42 176.0 178 47.2
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 4.6e-42 175.6 201 45.8
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 8.7e-41 171.4 227 42.7
SEGI_07586 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 9.7e-40 167.9 167 53.3
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 2.2e-36 156.8 214 38.3
HPP92_021194 Vanilla planifolia HOM05D005250 ORTHO05D006342 3.8e-36 156.0 224 36.2
Dinv34022 Davidia involucrata HOM05D005250 ORTHO05D006342 6.5e-36 155.2 153 47.1
Hma1.2p1_1307F.1_g274740 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 4.2e-35 152.5 164 44.5
arahy.Tifrunner.gnm1.ann1.M1Z73T Arachis hypogaea HOM05D005250 ORTHO05D006342 1.3e-23 114.4 181 36.5
EL10Ac8g19720 Beta vulgaris HOM05D005250 ORTHO05D006342 1.7e-23 114.0 204 35.8
Hma1.2p1_0473F.1_g160070 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 3.7e-23 112.8 107 51.4
CBR_g489 Chara braunii HOM05D000019 ORTHO05D000048 9.1e-22 108.2 122 47.5
BolC9t57871H Brassica oleracea HOM05D005250 ORTHO05D006342 7.7e-21 105.1 166 36.7
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 1.0e-20 104.8 204 34.3
Cfa027242 Carpinus fangiana HOM05D005250 ORTHO05D006342 2.7e-18 96.7 242 29.3
BraA04t18025Z Brassica rapa HOM05D005250 ORTHO05D006342 3.6e-18 96.3 95 49.5
A07p01490 Brassica napus HOM05D005250 ORTHO05D006342 2.6e-16 90.1 97 47.4
A03p09860 Brassica napus HOM05D001868 ORTHO05D003985 5.7e-16 89.0 87 51.7
C09p61860 Brassica napus HOM05D005250 ORTHO05D006342 1.8e-14 84.0 97 45.4
C08p18960 Brassica napus HOM05D005250 ORTHO05D006342 2.6e-13 80.1 88 45.5
SEGI_14635 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 5.0e-12 75.9 165 31.5
A05p26370 Brassica napus HOM05D005250 ORTHO05D006342 4.2e-11 72.8 97 41.2
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 2.1e-10 70.5 211 28.4
Aa31LG5G22420 Aethionema arabicum HOM05D001647 ORTHO05D001191 2.0e-08 63.9 105 31.4
Hma1.2p1_0473F.1_g160090 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 4.4e-08 62.8 72 44.4
BcaC03g14881 Brassica carinata HOM05D022129 ORTHO05D027289 7.5e-08 62.0 115 33.9
Oeu016975.2 Olea europaea HOM05D006384 ORTHO05D007917 7.5e-08 62.0 232 22.8
ATR0680G046 Amborella trichopoda HOM05D006384 ORTHO05D007917 9.7e-08 61.6 244 25.0
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 1.3e-07 61.2 239 22.2
Nn2g11540 Nelumbo nucifera HOM05D006384 ORTHO05D007917 1.3e-07 61.2 231 22.5
CAN.G509.15 Capsicum annuum HOM05D006384 ORTHO05D007917 1.7e-07 60.8 235 20.9
FAN02G0742 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.7e-07 60.8 218 22.5
AUR62040461 Chenopodium quinoa HOM05D006384 ORTHO05D007917 2.8e-07 60.1 222 24.3
FAN09G1862 Fragaria x ananassa HOM05D006384 ORTHO05D007917 2.8e-07 60.1 218 22.9
Lalb_Chr20g0112661 Lupinus albus HOM05D006384 ORTHO05D007917 2.8e-07 60.1 224 23.2
TAR369G0955 Trochodendron aralioides HOM05D006384 ORTHO05D007917 2.8e-07 60.1 224 25.4
CiPaw.10G132500 Carya illinoinensis HOM05D006384 ORTHO05D007917 4.8e-07 59.3 226 21.7
MCO04G452 Micromonas commoda HOM05D006384 ORTHO05D007917 4.8e-07 59.3 235 26.8
Sc20g0005270 Simmondsia chinensis HOM05D006384 ORTHO05D007917 4.8e-07 59.3 226 21.7
Sopen10g035590 Solanum pennellii HOM05D006384 ORTHO05D007917 4.8e-07 59.3 223 21.1
Ah.15g092420 Amaranthus hybridus HOM05D006384 ORTHO05D007917 6.3e-07 58.9 221 24.4
Ca_08852_v3 Cicer arietinum L. HOM05D006384 ORTHO05D007917 6.3e-07 58.9 250 22.8
Lj1g0002515 Lotus japonicus HOM05D006384 ORTHO05D007917 6.3e-07 58.9 224 22.3
Solyc10g086210.2 Solanum lycopersicum HOM05D006384 ORTHO05D007917 6.3e-07 58.9 223 21.1
CBR_g30715 Chara braunii HOM05D001230 ORTHO05D007917 1.1e-06 58.2 219 22.8
FAN14G1974 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.4e-06 57.8 218 21.6
FAN14G4113 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.4e-06 57.8 218 21.6
Hund20279 Selenicereus undatus HOM05D006384 ORTHO05D007917 1.8e-06 57.4 234 23.5
AagrBONN_evm.TU.Sc2ySwM_117.2066 Anthoceros agrestis HOM05D006384 ORTHO05D007917 2.4e-06 57.0 234 22.2
Cc06_g04070 Coffea canephora HOM05D006384 ORTHO05D007917 2.4e-06 57.0 229 21.8
Glyma.19G182800 Glycine max HOM05D006384 ORTHO05D007917 2.4e-06 57.0 226 21.2
HanXRQChr01g0027531 Helianthus annuus HOM05D006384 ORTHO05D007917 2.4e-06 57.0 235 21.3
SEGI_26624 Sequoiadendron giganteum HOM05D006384 ORTHO05D007917 3.1e-06 56.6 237 21.9
Thecc.05G063500 Theobroma cacao HOM05D006384 ORTHO05D007917 3.1e-06 56.6 247 23.5
ECA248G2568 Erigeron canadensis HOM05D006384 ORTHO05D007917 5.3e-06 55.8 243 21.4
RcHm_v2.0_Chr3g0469981 Rosa chinensis HOM05D006384 ORTHO05D007917 5.3e-06 55.8 234 21.8
GSVIVG01025711001 Vitis vinifera HOM05D006384 ORTHO05D007917 5.3e-06 55.8 230 21.3
THA.LOC104806487 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 7.0e-06 55.5 229 20.5
Atru.chr8.1840 Acer truncatum HOM05D006384 ORTHO05D007917 9.1e-06 55.1 230 22.6
Psat3g043320 Pisum sativum HOM05D006384 ORTHO05D007917 9.1e-06 55.1 228 21.9


User provided reference genes

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