Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO235G0072 Selaginella moellendorffii HOM05D004967 ORTHO05D006146 2.6e-83 312.0 154 100.0
Pp3c23_8360 Physcomitrium patens HOM05D004160 ORTHO05D004757 5.3e-12 75.1 98 39.8
Pp3c8_11730 Physcomitrium patens HOM05D004160 ORTHO05D004757 7.6e-11 71.2 70 44.3
Nn1g08721 Nelumbo nucifera HOM05D004967 ORTHO05D006146 1.3e-10 70.5 123 26.8
MBI06_g20715_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 2.9e-10 69.3 126 29.4
MSTRG.1454 Avicennia marina HOM05D004967 ORTHO05D006146 3.8e-10 68.9 126 30.2
Hund27025 Selenicereus undatus HOM05D004967 ORTHO05D006146 1.4e-09 67.0 69 42.0
CiPaw.08G054600 Carya illinoinensis HOM05D004160 ORTHO05D004757 2.4e-09 66.2 111 36.0
Mapoly0023s0096 Marchantia polymorpha HOM05D004160 ORTHO05D004757 3.2e-09 65.9 183 30.6
Dinv07242 Davidia involucrata HOM05D004967 ORTHO05D006146 9.3e-09 64.3 115 32.2
Lj7C339G8 Lonicera japonica HOM05D004967 ORTHO05D006146 9.3e-09 64.3 70 37.1
CANSAT25G1973 Cannabis sativa HOM05D004160 ORTHO05D004757 1.2e-08 63.9 99 35.4
CDE08G1235 Ceratophyllum demersum HOM05D004967 ORTHO05D006146 1.2e-08 63.9 74 36.5
Cc00_g04290 Coffea canephora HOM05D004967 ORTHO05D006146 1.2e-08 63.9 103 35.0
Aqoxy6G00188 Aquilegia oxysepala HOM05D004967 ORTHO05D006146 1.6e-08 63.5 75 40.0
Dinv40417 Davidia involucrata HOM05D004967 ORTHO05D006146 1.6e-08 63.5 115 32.2
CSS0034828 Camellia sinensis var. sinensis HOM05D004160 ORTHO05D004757 2.1e-08 63.2 101 34.7
SEGI_02584 Sequoiadendron giganteum HOM05D004967 ORTHO05D006146 2.1e-08 63.2 72 41.7
Atru.chr13.1038 Acer truncatum HOM05D004160 ORTHO05D004757 2.7e-08 62.8 101 34.7
Gohir.D05G236800 Gossypium hirsutum HOM05D004967 ORTHO05D006146 2.7e-08 62.8 82 34.1
MD15G1351500 Malus domestica HOM05D004967 ORTHO05D006146 2.7e-08 62.8 126 27.0
TWI36G0608 Tripterygium wilfordii HOM05D004160 ORTHO05D004757 2.7e-08 62.8 107 31.8
ECA238G0202 Erigeron canadensis HOM05D004967 ORTHO05D006146 3.5e-08 62.4 75 34.7
Hma1.2p1_0010F.1_g006920 Hydrangea macrophylla HOM05D004160 ORTHO05D004757 3.5e-08 62.4 102 35.3
Hund16853 Selenicereus undatus HOM05D004967 ORTHO05D006146 3.5e-08 62.4 81 38.3
vmacro21323 Vaccinium macrocarpon HOM05D004160 ORTHO05D004757 3.5e-08 62.4 102 34.3
Ah.05g170880 Amaranthus hybridus HOM05D004967 ORTHO05D006146 4.6e-08 62.0 74 37.8
CANSAT54G1838 Cannabis sativa HOM05D004967 ORTHO05D006146 6.0e-08 61.6 81 35.8
Carub.0001s3529 Capsella rubella HOM05D004967 ORTHO05D006146 6.0e-08 61.6 120 31.7
CiPaw.07G167300 Carya illinoinensis HOM05D004160 ORTHO05D004757 6.0e-08 61.6 114 34.2
Dinv27328 Davidia involucrata HOM05D004967 ORTHO05D006146 6.0e-08 61.6 105 30.5
Eucgr.F03780 Eucalyptus grandis HOM05D004967 ORTHO05D006146 6.0e-08 61.6 84 35.7
Eucgr.L02366 Eucalyptus grandis HOM05D004967 ORTHO05D006146 6.0e-08 61.6 84 35.7
Gorai.009G245200 Gossypium raimondii HOM05D004967 ORTHO05D006146 6.0e-08 61.6 82 32.9
MSTRG.23691 Avicennia marina HOM05D004160 ORTHO05D004757 7.9e-08 61.2 58 44.8
CANSAT54G0493 Cannabis sativa HOM05D004967 ORTHO05D006146 7.9e-08 61.2 81 35.8
CAN.G792.65 Capsicum annuum HOM05D004967 ORTHO05D006146 7.9e-08 61.2 126 27.0
Ciclev10002109m.g Citrus clementina HOM05D004967 ORTHO05D006146 7.9e-08 61.2 126 26.2
Cc10_g15690 Coffea canephora HOM05D004160 ORTHO05D004757 7.9e-08 61.2 101 33.7
CsaV3_2G009340 Cucumis sativus L. HOM05D004967 ORTHO05D006146 7.9e-08 61.2 82 36.6
Oeu017287.2 Olea europaea HOM05D004967 ORTHO05D006146 7.9e-08 61.2 126 29.4
CSS0002296 Camellia sinensis var. sinensis HOM05D004967 ORTHO05D006146 1.0e-07 60.8 70 35.7
Gohir.A01G188500 Gossypium hirsutum HOM05D004967 ORTHO05D006146 1.3e-07 60.5 100 33.0
Gohir.A05G265100 Gossypium hirsutum HOM05D004160 ORTHO05D004757 1.3e-07 60.5 118 32.2
MBI18_g05572_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 1.3e-07 60.5 69 37.7
AUR62027891 Chenopodium quinoa HOM05D004967 ORTHO05D006146 1.8e-07 60.1 74 39.2
Dinv42627 Davidia involucrata HOM05D004160 ORTHO05D004757 1.8e-07 60.1 109 34.9
Psat2g066520 Pisum sativum HOM05D004160 ORTHO05D004757 1.8e-07 60.1 100 37.0
TWI12G0727 Tripterygium wilfordii HOM05D004967 ORTHO05D006146 1.8e-07 60.1 82 36.6
unitig_85.g27260 Utricularia gibba HOM05D004160 ORTHO05D004757 1.8e-07 60.1 114 28.1
Ah.05g170710 Amaranthus hybridus HOM05D004160 ORTHO05D004757 2.3e-07 59.7 100 34.0
EL10Ac1g01046 Beta vulgaris HOM05D004967 ORTHO05D006146 2.3e-07 59.7 74 36.5
COL.COLO4_35202 Corchorus olitorius HOM05D004160 ORTHO05D004757 2.3e-07 59.7 111 30.6
COL.COLO4_35945 Corchorus olitorius HOM05D004967 ORTHO05D006146 2.3e-07 59.7 82 34.1
Lalb_Chr10g0101781 Lupinus albus HOM05D004967 ORTHO05D006146 2.3e-07 59.7 80 33.8
Phvul.008G180400 Phaseolus vulgaris HOM05D004160 ORTHO05D004757 2.3e-07 59.7 100 34.0
Phvul.009G143600 Phaseolus vulgaris HOM05D004160 ORTHO05D004757 2.3e-07 59.7 62 43.5
arahy.Tifrunner.gnm1.ann1.T53UMC Arachis hypogaea HOM05D004967 ORTHO05D006146 3.0e-07 59.3 82 35.4
ClCG08G005580 Citrullus lanatus HOM05D004967 ORTHO05D006146 3.0e-07 59.3 82 32.9
Gohir.D05G267400 Gossypium hirsutum HOM05D004160 ORTHO05D004757 3.0e-07 59.3 119 32.8
Gorai.009G279500 Gossypium raimondii HOM05D004160 ORTHO05D004757 3.0e-07 59.3 119 32.8
Lj4C734G12 Lonicera japonica HOM05D004160 ORTHO05D004757 3.0e-07 59.3 58 46.6
MBI08_g02103_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D011152 3.0e-07 59.3 87 36.8
RcHm_v2.0_Chr6g0295611 Rosa chinensis HOM05D004967 ORTHO05D006146 3.0e-07 59.3 70 37.1
Sc01g0001090 Simmondsia chinensis HOM05D004160 ORTHO05D004757 3.0e-07 59.3 101 32.7
Actinidia10375 Actinidia chinensis HOM05D004160 ORTHO05D004757 3.9e-07 58.9 106 33.0
Actinidia23071 Actinidia chinensis HOM05D004967 ORTHO05D006146 3.9e-07 58.9 117 29.1
Cfa016003 Carpinus fangiana HOM05D004967 ORTHO05D006146 3.9e-07 58.9 82 32.9
Ca_05405_v3 Cicer arietinum L. HOM05D004160 ORTHO05D004757 3.9e-07 58.9 100 37.0
MELO3C008775.2 Cucumis melo HOM05D004967 ORTHO05D006146 3.9e-07 58.9 82 34.1
Hma1.2p1_0125F.1_g059040 Hydrangea macrophylla HOM05D004160 ORTHO05D004757 3.9e-07 58.9 101 34.7
Peaxi162Scf00281g00317 Petunia axillaris HOM05D004160 ORTHO05D004757 3.9e-07 58.9 58 43.1
PGR042G3942 Punica granatum HOM05D004967 ORTHO05D006146 3.9e-07 58.9 126 25.4
QL09p035340 Quercus lobata HOM05D004967 ORTHO05D006146 3.9e-07 58.9 82 32.9
SalBow6G6278 Salvia bowleyana HOM05D004967 ORTHO05D006146 3.9e-07 58.9 70 37.1
Thecc.08G068800 Theobroma cacao HOM05D004160 ORTHO05D004757 3.9e-07 58.9 111 31.5
arahy.Tifrunner.gnm1.ann1.BVU39Z Arachis hypogaea HOM05D004160 ORTHO05D004757 5.1e-07 58.5 129 31.0
arahy.Tifrunner.gnm1.ann1.IX6BVV Arachis hypogaea HOM05D004160 ORTHO05D004757 5.1e-07 58.5 129 31.0
Cpa.g.sc309.1 Carica papaya HOM05D004160 ORTHO05D004757 5.1e-07 58.5 58 44.8
Cfa013695 Carpinus fangiana HOM05D004160 ORTHO05D004757 5.1e-07 58.5 112 34.8
AUR62019051 Chenopodium quinoa HOM05D004967 ORTHO05D006146 5.1e-07 58.5 74 39.2
FvH4_2g26730 Fragaria vesca HOM05D004967 ORTHO05D006146 5.1e-07 58.5 70 34.3
Prupe.1G528700 Prunus persica HOM05D004160 ORTHO05D004757 5.1e-07 58.5 58 44.8
QL09p017310 Quercus lobata HOM05D004160 ORTHO05D004757 5.1e-07 58.5 58 43.1
SGA_v2.0_scaffold28G12004 Striga asiatica HOM05D004967 ORTHO05D006146 5.1e-07 58.5 68 35.3
VMungo0647G1165 Vigna mungo HOM05D004160 ORTHO05D004757 5.1e-07 58.5 102 35.3
MSTRG.22413 Avicennia marina HOM05D004967 ORTHO05D006146 6.7e-07 58.2 70 34.3
CBR_g13070 Chara braunii HOM05D004967 ORTHO05D006146 6.7e-07 58.2 176 25.6
Ciclev10002321m.g Citrus clementina HOM05D004160 ORTHO05D004757 6.7e-07 58.2 117 32.5
Haze_00459 Corylus avellana HOM05D004967 ORTHO05D006146 6.7e-07 58.2 82 32.9
Migut.H00368 Erythranthe guttata HOM05D004160 ORTHO05D004757 6.7e-07 58.2 58 43.1
Migut.K00588 Erythranthe guttata HOM05D004160 ORTHO05D004757 6.7e-07 58.2 90 35.6
Gohir.A05G234500 Gossypium hirsutum HOM05D004967 ORTHO05D006146 6.7e-07 58.2 82 30.5
MD08G1165700 Malus domestica HOM05D004967 ORTHO05D006146 6.7e-07 58.2 64 37.5
Medtr1g030420 Medicago truncatula HOM05D004967 ORTHO05D006146 6.7e-07 58.2 83 33.7
Rhsim06G0073400 Rhododendron simsii HOM05D004160 ORTHO05D004757 6.7e-07 58.2 102 33.3
Rhsim07G0210500 Rhododendron simsii HOM05D004160 ORTHO05D004757 6.7e-07 58.2 58 41.4
Solyc11g030390.2 Solanum lycopersicum HOM05D004967 ORTHO05D006146 6.7e-07 58.2 126 27.0
TPR.G16029 Trifolium pratense HOM05D004160 ORTHO05D004757 6.7e-07 58.2 100 35.0
arahy.Tifrunner.gnm1.ann1.W41MX0 Arachis hypogaea HOM05D004967 ORTHO05D006146 8.7e-07 57.8 82 35.4
CSS0022408 Camellia sinensis var. sinensis HOM05D004967 ORTHO05D006146 8.7e-07 57.8 120 25.8
CAN.G1375.7 Capsicum annuum HOM05D004160 ORTHO05D004757 8.7e-07 57.8 132 29.5
Haze_22335 Corylus avellana HOM05D004160 ORTHO05D004757 8.7e-07 57.8 58 43.1
DCAR_017414 Daucus carota HOM05D004967 ORTHO05D006146 8.7e-07 57.8 70 35.7
Eucgr.F00408 Eucalyptus grandis HOM05D004160 ORTHO05D004757 8.7e-07 57.8 57 45.6
FAN24G1575 Fragaria x ananassa HOM05D004967 ORTHO05D006146 8.7e-07 57.8 70 34.3
HanXRQChr14g0444041 Helianthus annuus HOM05D004967 ORTHO05D006146 8.7e-07 57.8 126 23.8
PGR042G0674 Punica granatum HOM05D004160 ORTHO05D004757 8.7e-07 57.8 58 43.1
Hund27011 Selenicereus undatus HOM05D004160 ORTHO05D004757 8.7e-07 57.8 62 40.3
Sopen11g013380 Solanum pennellii HOM05D004967 ORTHO05D006146 8.7e-07 57.8 126 26.2
CiPaw.06G029300 Carya illinoinensis HOM05D004967 ORTHO05D006146 1.1e-06 57.4 82 31.7
Duzib093G0019 Durio zibethinus HOM05D004967 ORTHO05D006146 1.1e-06 57.4 126 26.2
Duzib116G0335 Durio zibethinus HOM05D004967 ORTHO05D006146 1.1e-06 57.4 145 26.2
Gohir.D01G181000 Gossypium hirsutum HOM05D004967 ORTHO05D006146 1.1e-06 57.4 100 33.0
Lj1g0018094 Lotus japonicus HOM05D004967 ORTHO05D006146 1.1e-06 57.4 83 36.1
THA.LOC104799806 Tarenaya hassleriana HOM05D004160 ORTHO05D004757 1.1e-06 57.4 61 42.6
TWI56G0453 Tripterygium wilfordii HOM05D004160 ORTHO05D004757 1.1e-06 57.4 107 29.9
TAR376G0668 Trochodendron aralioides HOM05D004967 ORTHO05D006146 1.1e-06 57.4 133 27.8
TAR625G0546 Trochodendron aralioides HOM05D004967 ORTHO05D006146 1.1e-06 57.4 126 26.2
VMungo1309G1362 Vigna mungo HOM05D004160 ORTHO05D004757 1.1e-06 57.4 58 43.1
Aqoxy6G01454 Aquilegia oxysepala HOM05D004160 ORTHO05D004757 1.5e-06 57.0 111 34.2
CSS0011461 Camellia sinensis var. sinensis HOM05D004967 ORTHO05D006146 1.5e-06 57.0 70 34.3
CSS0015935 Camellia sinensis var. sinensis HOM05D004967 ORTHO05D006146 1.5e-06 57.0 64 37.5
Gorai.002G221500 Gossypium raimondii HOM05D004967 ORTHO05D006146 1.5e-06 57.0 100 33.0
Manes.02G146200 Manihot esculenta HOM05D004160 ORTHO05D004757 1.5e-06 57.0 68 42.6
Sopen04g030060 Solanum pennellii HOM05D004160 ORTHO05D004757 1.5e-06 57.0 91 34.1
Thecc.08G123500 Theobroma cacao HOM05D004967 ORTHO05D006146 1.5e-06 57.0 145 24.8
TAR625G0133 Trochodendron aralioides HOM05D004967 ORTHO05D006146 1.5e-06 57.0 72 34.7
Aa31sc399G20 Aethionema arabicum HOM05D004160 ORTHO05D004757 1.9e-06 56.6 113 31.9
CSS0013226 Camellia sinensis var. sinensis HOM05D004160 ORTHO05D004757 1.9e-06 56.6 119 35.3
Duzib041G0282 Durio zibethinus HOM05D004160 ORTHO05D004757 1.9e-06 56.6 62 40.3
Lalb_Chr04g0252941 Lupinus albus HOM05D004160 ORTHO05D004757 1.9e-06 56.6 58 41.4
Mapoly0023s0095 Marchantia polymorpha HOM05D004967 ORTHO05D004757 1.9e-06 56.6 140 32.1
SEGI_08861 Sequoiadendron giganteum HOM05D004967 ORTHO05D006146 1.9e-06 56.6 72 40.3
Solyc04g076110.4 Solanum lycopersicum HOM05D004160 ORTHO05D004757 1.9e-06 56.6 91 34.1
PGSC0003DMG400022093 Solanum tuberosum HOM05D004967 ORTHO05D006146 1.9e-06 56.6 126 25.4
SGA_v2.0_scaffold107G30821 Striga asiatica HOM05D004160 ORTHO05D004757 1.9e-06 56.6 103 32.0
Zm00001eb054160 Zea mays HOM05D004967 ORTHO05D006146 1.9e-06 56.6 60 50.0
Cpa.g.sc36.53 Carica papaya HOM05D004967 ORTHO05D006146 2.5e-06 56.2 70 34.3
Eucgr.F02134 Eucalyptus grandis HOM05D004160 ORTHO05D004757 2.5e-06 56.2 100 33.0
Peaxi162Scf00688g00357 Petunia axillaris HOM05D004967 ORTHO05D006146 2.5e-06 56.2 70 34.3
TAR381G1580 Trochodendron aralioides HOM05D004160 ORTHO05D004757 2.5e-06 56.2 62 46.8
TAR381G1705 Trochodendron aralioides HOM05D004160 ORTHO05D004757 2.5e-06 56.2 62 46.8
GSVIVG01009149001 Vitis vinifera HOM05D004160 ORTHO05D004757 2.5e-06 56.2 120 33.3
Actinidia29615 Actinidia chinensis HOM05D004160 ORTHO05D004757 3.3e-06 55.8 121 31.4
CSS0048585 Camellia sinensis var. sinensis HOM05D004160 ORTHO05D004757 3.3e-06 55.8 119 34.5
Manes.02G162100 Manihot esculenta HOM05D004967 ORTHO05D006146 3.3e-06 55.8 82 31.7
PGSC0003DMG401012897 Solanum tuberosum HOM05D004160 ORTHO05D004757 3.3e-06 55.8 91 33.0
Atru.chr13.1436 Acer truncatum HOM05D004967 ORTHO05D006146 4.3e-06 55.5 78 33.3
Aa31LG4G9680 Aethionema arabicum HOM05D004160 ORTHO05D004757 4.3e-06 55.5 63 41.3
AT1G44770 Arabidopsis thaliana HOM05D004967 ORTHO05D006146 4.3e-06 55.5 112 31.2
BcaB07g33933 Brassica carinata HOM05D004967 ORTHO05D006146 4.3e-06 55.5 113 31.0
Glyma.04G092300 Glycine max HOM05D004160 ORTHO05D004757 4.3e-06 55.5 68 39.7
Glyma.13G080800 Glycine max HOM05D004967 ORTHO05D006146 4.3e-06 55.5 83 34.9
MD15G1382900 Malus domestica HOM05D004160 ORTHO05D004757 4.3e-06 55.5 58 41.4
Nitab4.5_0000131g0400 Nicotiana tabacum HOM05D004160 ORTHO05D004757 4.3e-06 55.5 58 39.7
Nitab4.5_0003300g0030 Nicotiana tabacum HOM05D004160 ORTHO05D004757 4.3e-06 55.5 58 39.7
Psat6g042000 Pisum sativum HOM05D004967 ORTHO05D006146 4.3e-06 55.5 83 32.5
QL09p036488 Quercus lobata HOM05D004967 ORTHO05D006146 4.3e-06 55.5 70 34.3
Rhsim06G0104700 Rhododendron simsii HOM05D004967 ORTHO05D006146 4.3e-06 55.5 120 27.5
RcHm_v2.0_Chr7g0237181 Rosa chinensis HOM05D004160 ORTHO05D004757 4.3e-06 55.5 58 43.1
vmacro12539 Vaccinium macrocarpon HOM05D004967 ORTHO05D006146 4.3e-06 55.5 100 32.0
GSVIVG01008885001 Vitis vinifera HOM05D004967 ORTHO05D006146 4.3e-06 55.5 126 25.4
DCAR_019307 Daucus carota HOM05D004160 ORTHO05D004757 5.6e-06 55.1 101 29.7
Glyma.06G094100 Glycine max HOM05D004160 ORTHO05D004757 5.6e-06 55.1 68 39.7
Potri.002G104200 Populus trichocarpa HOM05D004160 ORTHO05D004757 5.6e-06 55.1 62 38.7
TPR.G25780 Trifolium pratense HOM05D004967 ORTHO05D006146 5.6e-06 55.1 82 32.9
FAN08G0272 Fragaria x ananassa HOM05D004160 ORTHO05D004757 7.4e-06 54.7 58 41.4
Sed0005970 Sechium edule HOM05D004967 ORTHO05D006146 7.4e-06 54.7 82 30.5
CARHR036020 Cardamine hirsuta HOM05D004967 ORTHO05D006146 9.6e-06 54.3 107 31.8
FAN04G0528 Fragaria x ananassa HOM05D004160 ORTHO05D004757 9.6e-06 54.3 58 41.4
FAN13G3204 Fragaria x ananassa HOM05D004160 ORTHO05D004757 9.6e-06 54.3 58 41.4
FAN18G3264 Fragaria x ananassa HOM05D004160 ORTHO05D004757 9.6e-06 54.3 58 41.4
Lsat_1_v5_gn_2_72221 Lactuca sativa HOM05D004967 ORTHO05D006146 9.6e-06 54.3 126 24.6
Lalb_Chr00c21g0406251 Lupinus albus HOM05D004967 ORTHO05D006146 9.6e-06 54.3 73 30.1
Lalb_Chr04g0253391 Lupinus albus HOM05D004967 ORTHO05D006146 9.6e-06 54.3 73 30.1
Lalb_Chr10g0102681 Lupinus albus HOM05D004160 ORTHO05D004757 9.6e-06 54.3 58 43.1
MD08G1195200 Malus domestica HOM05D004160 ORTHO05D004757 9.6e-06 54.3 58 41.4
PSO017G5904 Papaver somniferum HOM05D004160 ORTHO05D004757 9.6e-06 54.3 58 39.7


User provided reference genes

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