Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO235G0068 Selaginella moellendorffii HOM05D002889 ORTHO05D003366 8.5e-91 337.0 177 100.0
Mapoly0066s0036 Marchantia polymorpha HOM05D002889 ORTHO05D003366 2.6e-39 166.0 165 53.9
Pp3c24_11460 Physcomitrium patens HOM05D002889 ORTHO05D003366 8.4e-38 161.0 165 53.3
AagrBONN_evm.TU.Sc2ySwM_228.3600 Anthoceros agrestis HOM05D002889 ORTHO05D003366 1.4e-37 160.2 165 52.1
Pp3c8_18290 Physcomitrium patens HOM05D002889 ORTHO05D003366 3.2e-37 159.1 165 52.7
SEGI_29841 Sequoiadendron giganteum HOM05D002889 ORTHO05D003366 4.2e-37 158.7 165 52.1
SMO358G0024 Selaginella moellendorffii HOM05D002889 ORTHO05D003366 6.0e-36 154.8 171 49.7
arahy.Tifrunner.gnm1.ann1.PFSA3S Arachis hypogaea HOM05D002889 ORTHO05D003366 3.9e-35 152.1 173 48.6
arahy.Tifrunner.gnm1.ann1.EIAU9G Arachis hypogaea HOM05D002889 ORTHO05D003366 6.6e-35 151.4 173 48.6
CiPaw.03G153400 Carya illinoinensis HOM05D002889 ORTHO05D003366 6.6e-35 151.4 165 49.1
Lj2C1137G6 Lonicera japonica HOM05D002889 ORTHO05D003366 8.7e-35 151.0 173 47.4
Ca_08769_v3 Cicer arietinum L. HOM05D002889 ORTHO05D003366 1.1e-34 150.6 165 48.5
Medtr7g099480 Medicago truncatula HOM05D002889 ORTHO05D003366 1.1e-34 150.6 165 48.5
TPR.G7556 Trifolium pratense HOM05D002889 ORTHO05D003366 1.1e-34 150.6 165 47.9
FvH4_2g19850 Fragaria vesca HOM05D002889 ORTHO05D003366 3.3e-34 149.1 165 47.9
FAN15G1177 Fragaria x ananassa HOM05D002889 ORTHO05D003366 3.3e-34 149.1 165 47.9
FAN24G0698 Fragaria x ananassa HOM05D002889 ORTHO05D003366 3.3e-34 149.1 165 47.9
FAN27G1075 Fragaria x ananassa HOM05D002889 ORTHO05D003366 3.3e-34 149.1 165 47.9
MD10G1170900 Malus domestica HOM05D002889 ORTHO05D003366 3.3e-34 149.1 165 47.9
CiPaw.04G108600 Carya illinoinensis HOM05D002889 ORTHO05D003366 4.3e-34 148.7 165 48.5
Phvul.001G168400 Phaseolus vulgaris HOM05D002889 ORTHO05D003366 4.3e-34 148.7 173 48.0
Cfa002518 Carpinus fangiana HOM05D002889 ORTHO05D003366 5.6e-34 148.3 165 49.1
Duzib133G1137 Durio zibethinus HOM05D002889 ORTHO05D003366 5.6e-34 148.3 165 47.9
Gorai.001G235400 Gossypium raimondii HOM05D002889 ORTHO05D003366 5.6e-34 148.3 165 47.9
Thecc.01G236600 Theobroma cacao HOM05D002889 ORTHO05D003366 5.6e-34 148.3 165 47.9
TAR636G2078 Trochodendron aralioides HOM05D002889 ORTHO05D003366 5.6e-34 148.3 165 47.3
MD05G1182800 Malus domestica HOM05D002889 ORTHO05D003366 7.3e-34 147.9 165 47.3
VMungo1383G1051 Vigna mungo HOM05D002889 ORTHO05D003366 7.3e-34 147.9 173 47.4
Glyma.19G171200 Glycine max HOM05D002889 ORTHO05D003366 9.6e-34 147.5 173 47.4
Solyc09g063030.4 Solanum lycopersicum HOM05D002889 ORTHO05D003366 9.6e-34 147.5 165 46.7
Sopen09g025200 Solanum pennellii HOM05D002889 ORTHO05D003366 9.6e-34 147.5 165 46.7
Aa31LG8G17120 Aethionema arabicum HOM05D002889 ORTHO05D003366 1.3e-33 147.1 170 47.1
Haze_24745 Corylus avellana HOM05D002889 ORTHO05D003366 1.3e-33 147.1 165 48.5
Gohir.A07G202300 Gossypium hirsutum HOM05D002889 ORTHO05D003366 1.3e-33 147.1 165 47.3
Medtr1g069165 Medicago truncatula HOM05D002889 ORTHO05D003366 1.3e-33 147.1 163 49.1
Psat3g050160 Pisum sativum HOM05D002889 ORTHO05D003366 1.3e-33 147.1 165 47.3
Prupe.8G209400 Prunus persica HOM05D002889 ORTHO05D003366 1.3e-33 147.1 165 46.7
CAN.G941.45 Capsicum annuum HOM05D002889 ORTHO05D003366 1.6e-33 146.7 165 47.3
Glyma.03G170000 Glycine max HOM05D002889 ORTHO05D003366 1.6e-33 146.7 173 47.4
Gohir.D07G208500 Gossypium hirsutum HOM05D002889 ORTHO05D003366 1.6e-33 146.7 165 47.3
Lalb_Chr25g0289711 Lupinus albus HOM05D002889 ORTHO05D003366 1.6e-33 146.7 173 46.8
Nitab4.5_0000813g0100 Nicotiana tabacum HOM05D002889 ORTHO05D003366 1.6e-33 146.7 165 47.3
TPR.G35800 Trifolium pratense HOM05D002889 ORTHO05D003366 2.1e-33 146.4 163 49.1
MSTRG.17535 Avicennia marina HOM05D002889 ORTHO05D003366 2.8e-33 146.0 165 46.7
Ca_09624_v3 Cicer arietinum L. HOM05D002889 ORTHO05D003366 2.8e-33 146.0 165 48.5
Cc01_g17450 Coffea canephora HOM05D002889 ORTHO05D003366 2.8e-33 146.0 173 46.8
Duzib138G1300 Durio zibethinus HOM05D002889 ORTHO05D003366 2.8e-33 146.0 161 48.4
Gohir.A08G192800 Gossypium hirsutum HOM05D002889 ORTHO05D003366 2.8e-33 146.0 165 46.1
Lsat_1_v5_gn_8_90261 Lactuca sativa HOM05D002889 ORTHO05D003366 2.8e-33 146.0 165 46.7
Lj1g0020070 Lotus japonicus HOM05D002889 ORTHO05D003366 2.8e-33 146.0 165 47.3
Peaxi162Scf00052g02011 Petunia axillaris HOM05D002889 ORTHO05D003366 2.8e-33 146.0 165 46.1
Psat6g064880 Pisum sativum HOM05D002889 ORTHO05D003366 2.8e-33 146.0 163 49.7
Solyc06g008040.3 Solanum lycopersicum HOM05D002889 ORTHO05D003366 2.8e-33 146.0 165 47.9
Sopen06g002880 Solanum pennellii HOM05D002889 ORTHO05D003366 2.8e-33 146.0 165 47.9
CSS0022688 Camellia sinensis var. sinensis HOM05D002889 ORTHO05D003366 3.6e-33 145.6 165 46.7
Cpa.g.sc8.204 Carica papaya HOM05D002889 ORTHO05D003366 3.6e-33 145.6 165 47.3
HanXRQChr13g0409041 Helianthus annuus HOM05D002889 ORTHO05D003366 3.6e-33 145.6 165 46.7
AT2G20190 Arabidopsis thaliana HOM05D002889 ORTHO05D003366 4.8e-33 145.2 170 45.9
Manes.13G042800 Manihot esculenta HOM05D002889 ORTHO05D003366 4.8e-33 145.2 165 46.7
RcHm_v2.0_Chr6g0285551 Rosa chinensis HOM05D002889 ORTHO05D003366 4.8e-33 145.2 165 47.3
Ah.08g213900 Amaranthus hybridus HOM05D002889 ORTHO05D003366 6.2e-33 144.8 173 45.7
Carub.0003s3449 Capsella rubella HOM05D002889 ORTHO05D003366 6.2e-33 144.8 170 45.9
CARHR110690 Cardamine hirsuta HOM05D002889 ORTHO05D003366 6.2e-33 144.8 170 45.9
Dinv43034 Davidia involucrata HOM05D002889 ORTHO05D003366 6.2e-33 144.8 165 46.7
Thhalv10001879m.g Eutrema salsugineum HOM05D002889 ORTHO05D003366 6.2e-33 144.8 170 45.9
Nn1g03087 Nelumbo nucifera HOM05D002889 ORTHO05D003366 6.2e-33 144.8 165 45.5
Sp3g33430 Schrenkiella parvula HOM05D002889 ORTHO05D003366 6.2e-33 144.8 170 45.9
Hund05497 Selenicereus undatus HOM05D002889 ORTHO05D003366 6.2e-33 144.8 173 45.7
THA.LOC104820061 Tarenaya hassleriana HOM05D002889 ORTHO05D003366 6.2e-33 144.8 165 46.7
GSVIVG01028491001 Vitis vinifera HOM05D002889 ORTHO05D003366 8.1e-33 144.4 165 45.5
BcaC04g22811 Brassica carinata HOM05D002889 ORTHO05D003366 1.1e-32 144.1 170 45.3
A09p12740 Brassica napus HOM05D002889 ORTHO05D003366 1.1e-32 144.1 170 45.3
C09p15080 Brassica napus HOM05D002889 ORTHO05D003366 1.1e-32 144.1 170 45.3
BolC9t54414H Brassica oleracea HOM05D002889 ORTHO05D003366 1.1e-32 144.1 170 45.3
Gohir.D08G210800 Gossypium hirsutum HOM05D002889 ORTHO05D003366 1.1e-32 144.1 165 45.5
Nn3g19858 Nelumbo nucifera HOM05D002889 ORTHO05D003366 1.1e-32 144.1 165 45.5
PGR044G2403 Punica granatum HOM05D002889 ORTHO05D003366 1.1e-32 144.1 165 46.1
TWI14G1217 Tripterygium wilfordii HOM05D002889 ORTHO05D003366 1.1e-32 144.1 165 46.1
TAR362G1318 Trochodendron aralioides HOM05D002889 ORTHO05D003366 1.1e-32 144.1 163 47.2
BcaNung04093 Brassica carinata HOM05D002889 ORTHO05D003366 1.4e-32 143.7 170 45.3
BraA09t36918Z Brassica rapa HOM05D002889 ORTHO05D003366 1.4e-32 143.7 170 45.3
HanXRQChr10g0287251 Helianthus annuus HOM05D002889 ORTHO05D003366 1.4e-32 143.7 165 46.7
Lj1A81G48 Lonicera japonica HOM05D002889 ORTHO05D003366 1.4e-32 143.7 165 45.5
Nitab4.5_0003180g0050 Nicotiana tabacum HOM05D002889 ORTHO05D003366 1.4e-32 143.7 165 47.3
TWI23G0798 Tripterygium wilfordii HOM05D002889 ORTHO05D003366 1.4e-32 143.7 165 45.5
Aqoxy5G00053 Aquilegia oxysepala HOM05D002889 ORTHO05D003366 1.8e-32 143.3 165 44.2
A07p00540 Brassica napus HOM05D002889 ORTHO05D003366 1.8e-32 143.3 170 45.3
C07p00990 Brassica napus HOM05D002889 ORTHO05D003366 1.8e-32 143.3 170 45.3
BraA07t27848Z Brassica rapa HOM05D002889 ORTHO05D003366 1.8e-32 143.3 170 45.3
Dinv19241 Davidia involucrata HOM05D002889 ORTHO05D003366 1.8e-32 143.3 165 45.5
ECA236G1707 Erigeron canadensis HOM05D002889 ORTHO05D003366 1.8e-32 143.3 165 45.5
Eucgr.H00823 Eucalyptus grandis HOM05D002889 ORTHO05D003366 1.8e-32 143.3 165 45.5
Gorai.004G223500 Gossypium raimondii HOM05D002889 ORTHO05D003366 1.8e-32 143.3 165 45.5
Manes.12G044400 Manihot esculenta HOM05D002889 ORTHO05D003366 1.8e-32 143.3 165 46.1
Potri.002G253200 Populus trichocarpa HOM05D002889 ORTHO05D003366 1.8e-32 143.3 165 46.1
Rhsim13G0041900 Rhododendron simsii HOM05D002889 ORTHO05D003366 1.8e-32 143.3 165 46.1
Actinidia09497 Actinidia chinensis HOM05D002889 ORTHO05D003366 2.4e-32 142.9 165 46.1
BcaB03g16811 Brassica carinata HOM05D002889 ORTHO05D003366 2.4e-32 142.9 170 45.3
Eucgr.K03590 Eucalyptus grandis HOM05D002889 ORTHO05D003366 2.4e-32 142.9 165 44.8
SGA_v2.0_scaffold3G01589 Striga asiatica HOM05D002889 ORTHO05D003366 2.4e-32 142.9 165 46.1
ATR0787G124 Amborella trichopoda HOM05D002889 ORTHO05D003366 3.1e-32 142.5 170 48.2
AL3G47890 Arabidopsis lyrata HOM05D002889 ORTHO05D003366 3.1e-32 142.5 170 45.3
MBI10_g16806_MAGBIO Magnolia biondii HOM05D002889 ORTHO05D003366 3.1e-32 142.5 166 47.0
Nitab4.5_0002727g0040 Nicotiana tabacum HOM05D002889 ORTHO05D003366 3.1e-32 142.5 165 46.7
SGA_v2.0_scaffold42G16158 Striga asiatica HOM05D002889 ORTHO05D003366 3.1e-32 142.5 165 45.5
TAR365G1138 Trochodendron aralioides HOM05D002889 ORTHO05D003366 3.1e-32 142.5 165 44.8
Actinidia37570 Actinidia chinensis HOM05D002889 ORTHO05D003366 4.0e-32 142.1 165 45.5
MSTRG.12505 Avicennia marina HOM05D002889 ORTHO05D003366 4.0e-32 142.1 165 44.8
Gohir.A07G154000 Gossypium hirsutum HOM05D002889 ORTHO05D003366 4.0e-32 142.1 165 46.1
Oeu017344.1 Olea europaea HOM05D002889 ORTHO05D003366 4.0e-32 142.1 165 45.5
Sabra02G0192400 Salix brachista HOM05D002889 ORTHO05D003366 4.0e-32 142.1 165 46.1
vmacro14774 Vaccinium macrocarpon HOM05D002889 ORTHO05D003366 4.0e-32 142.1 165 45.5
BolC7t40536H Brassica oleracea HOM05D002889 ORTHO05D003366 5.3e-32 141.7 170 44.7
Ciclev10018498m.g Citrus clementina HOM05D002889 ORTHO05D003366 5.3e-32 141.7 165 46.1
Gorai.001G183300 Gossypium raimondii HOM05D002889 ORTHO05D003366 5.3e-32 141.7 165 46.1
Peaxi162Scf00499g00610 Petunia axillaris HOM05D002889 ORTHO05D003366 5.3e-32 141.7 161 46.6
unitig_899.g15235 Utricularia gibba HOM05D002889 ORTHO05D003366 5.3e-32 141.7 181 41.4
DCAR_018539 Daucus carota HOM05D002889 ORTHO05D003366 6.9e-32 141.4 165 44.8
Gohir.D07G160200 Gossypium hirsutum HOM05D002889 ORTHO05D003366 6.9e-32 141.4 165 45.5
PSO170G4103 Papaver somniferum HOM05D002889 ORTHO05D003366 6.9e-32 141.4 165 43.6
CAN.G503.27 Capsicum annuum HOM05D002889 ORTHO05D003366 9.0e-32 141.0 165 45.5
Migut.N02247 Erythranthe guttata HOM05D002889 ORTHO05D003366 9.0e-32 141.0 165 44.2
SalBow6G0687 Salvia bowleyana HOM05D002889 ORTHO05D003366 9.0e-32 141.0 165 44.2
MELO3C024150.2 Cucumis melo HOM05D002889 ORTHO05D003366 1.2e-31 140.6 165 45.5
Lsat_1_v5_gn_9_11241 Lactuca sativa HOM05D002889 ORTHO05D003366 1.2e-31 140.6 165 44.2
Sed0001453 Sechium edule HOM05D002889 ORTHO05D003366 1.2e-31 140.6 165 44.8
EL10Ac7g17762 Beta vulgaris HOM05D002889 ORTHO05D003366 1.5e-31 140.2 173 43.9
Atru.chr5.1927 Acer truncatum HOM05D002889 ORTHO05D003366 2.0e-31 139.8 165 44.8
PSO764G0331 Papaver somniferum HOM05D002889 ORTHO05D003366 2.0e-31 139.8 165 43.0
Hund18347 Selenicereus undatus HOM05D002889 ORTHO05D003366 2.0e-31 139.8 174 45.4
AUR62025387 Chenopodium quinoa HOM05D002889 ORTHO05D003366 2.6e-31 139.4 173 43.4
CsaV3_7G025450 Cucumis sativus L. HOM05D002889 ORTHO05D003366 2.6e-31 139.4 165 44.8
VMungo0720G0228 Vigna mungo HOM05D002889 ORTHO05D003366 2.6e-31 139.4 165 46.1
DCAR_012623 Daucus carota HOM05D002889 ORTHO05D003366 3.4e-31 139.0 165 44.2
Glyma.13G130000 Glycine max HOM05D002889 ORTHO05D003366 3.4e-31 139.0 165 46.7
Oeu015449.1 Olea europaea HOM05D002889 ORTHO05D003366 3.4e-31 139.0 165 44.8
vmacro02730 Vaccinium macrocarpon HOM05D002889 ORTHO05D003366 3.4e-31 139.0 165 44.8
AUR62008857 Chenopodium quinoa HOM05D002889 ORTHO05D003366 5.8e-31 138.3 173 42.8
QL09p043970 Quercus lobata HOM05D002889 ORTHO05D003366 5.8e-31 138.3 166 45.2
ClCG09G009410 Citrullus lanatus HOM05D002889 ORTHO05D003366 7.6e-31 137.9 165 44.8
Glyma.10G042600 Glycine max HOM05D002889 ORTHO05D003366 7.6e-31 137.9 165 46.7
Phvul.007G156100 Phaseolus vulgaris HOM05D002889 ORTHO05D003366 7.6e-31 137.9 165 45.5
CDE09G0867 Ceratophyllum demersum HOM05D002889 ORTHO05D003366 9.9e-31 137.5 162 42.6
Lj5g0008167 Lotus japonicus HOM05D002889 ORTHO05D003366 9.9e-31 137.5 165 45.5
Rhsim01G0258400 Rhododendron simsii HOM05D002889 ORTHO05D003366 9.9e-31 137.5 165 45.5
Sed0016475 Sechium edule HOM05D002889 ORTHO05D003366 9.9e-31 137.5 165 43.6
Pp3c3_31820 Physcomitrium patens HOM05D002889 ORTHO05D003366 3.8e-30 135.6 163 44.2
HPP92_027293 Vanilla planifolia HOM05D002889 ORTHO05D003366 8.4e-30 134.4 162 45.1
PGR083G0457 Punica granatum HOM05D002889 ORTHO05D003366 1.1e-29 134.0 165 44.2
Glyma.19G060900 Glycine max HOM05D002889 ORTHO05D003366 1.9e-29 133.3 170 44.1
SHI47266 Sapria himalayana HOM05D002889 ORTHO05D003366 1.9e-29 133.3 165 43.6
arahy.Tifrunner.gnm1.ann1.CB4TML Arachis hypogaea HOM05D002889 ORTHO05D003366 3.2e-29 132.5 180 44.4
Lalb_Chr02g0152941 Lupinus albus HOM05D002889 ORTHO05D003366 3.2e-29 132.5 165 44.2
CDE02G3724 Ceratophyllum demersum HOM05D002889 ORTHO05D003366 5.4e-29 131.7 165 43.6
arahy.Tifrunner.gnm1.ann1.73DRY2 Arachis hypogaea HOM05D002889 ORTHO05D003366 1.2e-28 130.6 180 43.9
Os04g0507500 Oryza sativa ssp. japonica HOM05D002889 ORTHO05D003366 2.1e-28 129.8 172 41.9
Os02g0617300 Oryza sativa ssp. japonica HOM05D002889 ORTHO05D003366 3.5e-28 129.0 171 42.1
AagrBONN_evm.TU.Sc2ySwM_344.3270 Anthoceros agrestis HOM05D002889 ORTHO05D003366 3.9e-27 125.6 162 45.7
Zm00001eb077900 Zea mays HOM05D002889 ORTHO05D003366 5.1e-27 125.2 171 40.9
Zm00001eb426220 Zea mays HOM05D002889 ORTHO05D003366 5.1e-27 125.2 171 40.9
SGA_v2.0_scaffold1G00677 Striga asiatica HOM05D002889 ORTHO05D003366 6.7e-27 124.8 199 36.7
BcaC06g36696 Brassica carinata HOM05D002889 ORTHO05D003366 7.4e-26 121.3 170 39.4
Lalb_Chr20g0113361 Lupinus albus HOM05D002889 ORTHO05D003366 4.5e-23 112.1 173 39.9
FAN09G3985 Fragaria x ananassa HOM05D002889 ORTHO05D003366 1.4e-21 107.1 141 43.3
FAN21G2147 Fragaria x ananassa HOM05D002889 ORTHO05D003366 1.4e-21 107.1 141 43.3
Gorai.006G054600 Gossypium raimondii HOM05D002889 ORTHO05D003366 1.4e-21 107.1 174 37.4
Oeu039639.1 Olea europaea HOM05D002889 ORTHO05D003366 2.5e-21 106.3 112 47.3
Duzib212G0822 Durio zibethinus HOM05D002889 ORTHO05D003366 4.2e-21 105.5 168 36.9
COL.COLO4_05728 Corchorus olitorius HOM05D002889 ORTHO05D003366 1.6e-20 103.6 155 38.1
Zm00001eb116890 Zea mays HOM05D002889 ORTHO05D003366 5.7e-18 95.1 124 42.7
SMO308G0007 Selaginella moellendorffii HOM05D002889 ORTHO05D003366 9.6e-18 94.4 176 33.0
unitig_746.g26747 Utricularia gibba HOM05D002889 ORTHO05D003366 4.8e-17 92.0 197 32.5
Hma1.2p1_1018F.1_g248420 Hydrangea macrophylla HOM05D002889 ORTHO05D003366 2.2e-14 83.2 96 43.8
CDE08G0296 Ceratophyllum demersum HOM05D002889 ORTHO05D003366 7.9e-12 74.7 165 30.3
DCAR_015416 Daucus carota HOM05D002889 ORTHO05D045050 1.3e-11 73.9 111 37.8
Cre03.g154425 Chlamydomonas reinhardtii HOM05D002889 ORTHO05D003366 2.0e-07 60.1 130 30.0


User provided reference genes

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