Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO235G0026 Selaginella moellendorffii HOM05D027923 ORTHO05D002802 1.8e-142 509.2 259 100.0
SMO347G0157 Selaginella moellendorffii HOM05D027923 ORTHO05D374216 2.2e-42 176.8 87 98.9
Glyma.16G003300 Glycine max HOM05D002530 ORTHO05D002802 6.6e-07 58.9 43 76.7
Atru.chr6.793 Acer truncatum HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
Actinidia06474 Actinidia chinensis HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
Actinidia26167 Actinidia chinensis HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
ATR0584G164 Amborella trichopoda HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
Aqoxy6G00138 Aquilegia oxysepala HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
arahy.Tifrunner.gnm1.ann1.8IGA7D Arachis hypogaea HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
arahy.Tifrunner.gnm1.ann1.ARQ4UL Arachis hypogaea HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
CSS0005551 Camellia sinensis var. sinensis HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
CSS0048271 Camellia sinensis var. sinensis HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
CAN.G196.3 Capsicum annuum HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
CiPaw.05G005400 Carya illinoinensis HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
Ca_00044_v3 Cicer arietinum L. HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
Ciclev10000208m.g Citrus clementina HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
Cc02_g23070 Coffea canephora HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
COL.COLO4_17733 Corchorus olitorius HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
COL.COLO4_26748 Corchorus olitorius HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
Duzib132G0844 Durio zibethinus HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
Eucgr.I02760 Eucalyptus grandis HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
FvH4_6g26000 Fragaria vesca HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
FAN02G4569 Fragaria x ananassa HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
FAN05G3449 Fragaria x ananassa HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
FAN09G0211 Fragaria x ananassa HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
Glyma.12G167300 Glycine max HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
Gohir.D02G236700 Gossypium hirsutum HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
Gorai.005G265200 Gossypium raimondii HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
Lalb_Chr18g0061051 Lupinus albus HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
MD08G1240900 Malus domestica HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
Manes.07G023400 Manihot esculenta HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
Medtr2g005870 Medicago truncatula HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
Nitab4.5_0000667g0080 Nicotiana tabacum HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
Nitab4.5_0002550g0020 Nicotiana tabacum HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
Phvul.006G218700 Phaseolus vulgaris HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
Psat1g222280 Pisum sativum HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
Potri.003G008800 Populus trichocarpa HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
Potri.004G223400 Populus trichocarpa HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
PGR142G2696 Punica granatum HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
Rhsim05G0120400 Rhododendron simsii HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
RcHm_v2.0_Chr7g0220721 Rosa chinensis HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
Sabra03G0004400 Salix brachista HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
SMO347G0173 Selaginella moellendorffii HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 86.5
Solyc10g044900.3 Solanum lycopersicum HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
Sopen10g013890 Solanum pennellii HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
Thecc.02G019500 Theobroma cacao HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
TPR.G2132 Trifolium pratense HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
TWI14G0172 Tripterygium wilfordii HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
TWI23G0330 Tripterygium wilfordii HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
TAR628G1217 Trochodendron aralioides HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
vmacro19867 Vaccinium macrocarpon HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
HPP92_017233 Vanilla planifolia HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
VMungo0540G0429 Vigna mungo HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
GSVIVG01023259001 Vitis vinifera HOM05D002530 ORTHO05D002802 1.5e-06 57.8 37 83.8
Os01g0870100 Oryza sativa ssp. japonica HOM05D002530 ORTHO05D002802 1.9e-06 57.4 37 83.8
Sed0015896 Sechium edule HOM05D002530 ORTHO05D002802 1.9e-06 57.4 43 74.4
SEGI_06022 Sequoiadendron giganteum HOM05D002530 ORTHO05D002802 1.9e-06 57.4 37 83.8
Zm00001eb146490 Zea mays HOM05D002530 ORTHO05D002802 1.9e-06 57.4 37 83.8
DCAR_006675 Daucus carota HOM05D002530 ORTHO05D002802 2.5e-06 57.0 40 77.5
MSTRG.16493 Avicennia marina HOM05D002530 ORTHO05D002802 3.3e-06 56.6 37 81.1
CANSAT54G0268 Cannabis sativa HOM05D002530 ORTHO05D002802 3.3e-06 56.6 37 81.1
Cpa.g.sc113.52 Carica papaya HOM05D002530 ORTHO05D002802 3.3e-06 56.6 32 90.6
Dinv19402 Davidia involucrata HOM05D002530 ORTHO05D002802 3.3e-06 56.6 37 81.1
ECA236G1516 Erigeron canadensis HOM05D002530 ORTHO05D002802 3.3e-06 56.6 32 90.6
Migut.B00779 Erythranthe guttata HOM05D002530 ORTHO05D002802 3.3e-06 56.6 37 81.1
HanXRQChr06g0181371 Helianthus annuus HOM05D002530 ORTHO05D002802 3.3e-06 56.6 32 90.6
Lsat_1_v5_gn_7_76001 Lactuca sativa HOM05D002530 ORTHO05D002802 3.3e-06 56.6 32 90.6
Lj6g0022277 Lotus japonicus HOM05D002530 ORTHO05D002802 3.3e-06 56.6 37 81.1
PSO170G2866 Papaver somniferum HOM05D002530 ORTHO05D002802 3.3e-06 56.6 40 77.5
QL02p100278 Quercus lobata HOM05D002530 ORTHO05D002802 3.3e-06 56.6 40 77.5
EL10Ac6g14174 Beta vulgaris HOM05D002530 ORTHO05D002802 4.3e-06 56.2 37 81.1
BcaC03g14657 Brassica carinata HOM05D002530 ORTHO05D002802 4.3e-06 56.2 37 81.1
A02p12850 Brassica napus HOM05D002530 ORTHO05D002802 4.3e-06 56.2 37 81.1
C02p20900 Brassica napus HOM05D002530 ORTHO05D002802 4.3e-06 56.2 37 81.1
BolC2t08233H Brassica oleracea HOM05D002530 ORTHO05D002802 4.3e-06 56.2 37 81.1
BraA02t06341Z Brassica rapa HOM05D002530 ORTHO05D002802 4.3e-06 56.2 37 81.1
MELO3C011822.2 Cucumis melo HOM05D002530 ORTHO05D002802 4.3e-06 56.2 37 81.1
CsaV3_5G029810 Cucumis sativus L. HOM05D002530 ORTHO05D002802 4.3e-06 56.2 37 81.1
Nn5g27864 Nelumbo nucifera HOM05D002530 ORTHO05D002802 4.3e-06 56.2 37 81.1
Mapoly0024s0089 Marchantia polymorpha HOM05D002530 ORTHO05D002802 5.6e-06 55.8 37 81.1
Mapoly0173s0002 Marchantia polymorpha HOM05D002530 ORTHO05D002802 5.6e-06 55.8 37 81.1
Duzib052G0897 Durio zibethinus HOM05D002530 ORTHO05D002802 7.3e-06 55.5 37 81.1
Lj5A262T66 Lonicera japonica HOM05D002530 ORTHO05D002802 7.3e-06 55.5 37 78.4
Prupe.1G577700 Prunus persica HOM05D002530 ORTHO05D002802 7.3e-06 55.5 37 81.1
ATR0743G261 Amborella trichopoda HOM05D002530 ORTHO05D002802 9.5e-06 55.1 37 75.7
Haze_10049 Corylus avellana HOM05D002530 ORTHO05D002802 9.5e-06 55.1 37 78.4
QL02p100314 Quercus lobata HOM05D002530 ORTHO05D002802 9.5e-06 55.1 37 81.1
SGA_v2.0_scaffold304G47909 Striga asiatica HOM05D002530 ORTHO05D002802 9.5e-06 55.1 37 78.4


User provided reference genes

Program Settings