Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO234G0011 Selaginella moellendorffii HOM05D006843 ORTHO05D008517 3.4e-144 515.0 262 100.0
Mapoly0001s0246 Marchantia polymorpha HOM05D006843 ORTHO05D008517 1.0e-68 264.2 257 54.9
Pp3c9_17980 Physcomitrium patens HOM05D006843 ORTHO05D008517 4.2e-62 242.3 259 49.8
BcaC06g32719 Brassica carinata HOM05D006843 ORTHO05D008517 3.6e-61 239.2 264 49.6
Thhalv10025611m.g Eutrema salsugineum HOM05D006843 ORTHO05D008517 7.5e-59 231.5 256 48.8
BolC7t46005H Brassica oleracea HOM05D006843 ORTHO05D008517 4.8e-58 228.8 254 48.8
C07p55080 Brassica napus HOM05D006843 ORTHO05D008517 6.3e-58 228.4 258 48.8
A03p56990 Brassica napus HOM05D006843 ORTHO05D008517 1.4e-57 227.3 263 47.5
BraA03t14769Z Brassica rapa HOM05D006843 ORTHO05D008517 1.4e-57 227.3 263 47.5
Gohir.A01G079900 Gossypium hirsutum HOM05D006843 ORTHO05D008517 1.8e-57 226.9 258 47.7
Gohir.D01G067100 Gossypium hirsutum HOM05D006843 ORTHO05D008517 2.4e-57 226.5 258 48.1
Sabra11G0086300 Salix brachista HOM05D006843 ORTHO05D008517 2.4e-57 226.5 259 46.7
Gorai.002G089000 Gossypium raimondii HOM05D006843 ORTHO05D008517 4.1e-57 225.7 258 48.1
Potri.011G090700 Populus trichocarpa HOM05D006843 ORTHO05D008517 1.2e-56 224.2 261 45.6
AT4G26980 Arabidopsis thaliana HOM05D006843 ORTHO05D008517 1.6e-56 223.8 254 47.6
AL7G25850 Arabidopsis lyrata HOM05D006843 ORTHO05D008517 2.0e-56 223.4 259 47.9
Aa31LG5G10440 Aethionema arabicum HOM05D006843 ORTHO05D008517 2.7e-56 223.0 262 48.1
Thecc.07G035800 Theobroma cacao HOM05D006843 ORTHO05D008517 7.7e-56 221.5 257 46.3
THA.LOC104809268 Tarenaya hassleriana HOM05D006843 ORTHO05D008517 3.8e-55 219.2 261 47.5
Carub.0007s1386 Capsella rubella HOM05D006843 ORTHO05D008517 8.6e-55 218.0 258 46.5
Nn1g03519 Nelumbo nucifera HOM05D006843 ORTHO05D008517 1.1e-54 217.6 260 45.0
Cpa.g.sc12.302 Carica papaya HOM05D006843 ORTHO05D008517 1.5e-54 217.2 258 46.1
Zm00001eb273720 Zea mays HOM05D006843 ORTHO05D008517 1.5e-54 217.2 264 45.1
Duzib268G1400 Durio zibethinus HOM05D006843 ORTHO05D008517 1.9e-54 216.9 260 46.2
Actinidia05093 Actinidia chinensis HOM05D006843 ORTHO05D008517 2.5e-54 216.5 258 44.6
CiPaw.11G190100 Carya illinoinensis HOM05D006843 ORTHO05D008517 2.5e-54 216.5 259 46.7
Cc05_g13830 Coffea canephora HOM05D006843 ORTHO05D008517 2.5e-54 216.5 259 44.4
Eucgr.F00758 Eucalyptus grandis HOM05D006843 ORTHO05D008517 2.5e-54 216.5 260 47.3
Prupe.4G214500 Prunus persica HOM05D006843 ORTHO05D008517 2.5e-54 216.5 260 47.3
ClCG09G010830 Citrullus lanatus HOM05D006843 ORTHO05D008517 4.2e-54 215.7 256 45.7
TAR624G1415 Trochodendron aralioides HOM05D006843 ORTHO05D008517 4.2e-54 215.7 261 46.7
GSVIVG01037656001 Vitis vinifera HOM05D006843 ORTHO05D008517 4.2e-54 215.7 262 47.3
Ah.04g165900 Amaranthus hybridus HOM05D006843 ORTHO05D008517 5.5e-54 215.3 261 48.7
Ciclev10008752m.g Citrus clementina HOM05D006843 ORTHO05D008517 7.2e-54 214.9 258 47.3
MELO3C013160.2 Cucumis melo HOM05D006843 ORTHO05D008517 7.2e-54 214.9 256 44.9
CsaV3_7G021850 Cucumis sativus L. HOM05D006843 ORTHO05D008517 7.2e-54 214.9 256 44.9
Zm00001eb224560 Zea mays HOM05D006843 ORTHO05D008517 7.2e-54 214.9 260 45.0
Dinv22258 Davidia involucrata HOM05D006843 ORTHO05D008517 1.2e-53 214.2 248 45.2
Glyma.02G291800 Glycine max HOM05D006843 ORTHO05D008517 1.2e-53 214.2 257 47.9
Lsat_1_v5_gn_7_109981 Lactuca sativa HOM05D006843 ORTHO05D008517 1.2e-53 214.2 260 46.5
Peaxi162Scf00235g00218 Petunia axillaris HOM05D006843 ORTHO05D008517 1.2e-53 214.2 260 47.3
CSS0043197 Camellia sinensis var. sinensis HOM05D006843 ORTHO05D008517 1.6e-53 213.8 259 43.2
ECA236G1023 Erigeron canadensis HOM05D006843 ORTHO05D008517 1.6e-53 213.8 259 45.9
Glyma.14G022900 Glycine max HOM05D006843 ORTHO05D008517 1.6e-53 213.8 257 47.5
VMungo0647G1675 Vigna mungo HOM05D006843 ORTHO05D008517 2.1e-53 213.4 260 48.5
CARHR234590 Cardamine hirsuta HOM05D006843 ORTHO05D008517 2.8e-53 213.0 259 45.2
Aqoxy4G01855 Aquilegia oxysepala HOM05D006843 ORTHO05D008517 3.6e-53 212.6 263 43.7
Migut.M01756 Erythranthe guttata HOM05D006843 ORTHO05D008517 3.6e-53 212.6 261 46.7
Manes.03G129700 Manihot esculenta HOM05D006843 ORTHO05D008517 3.6e-53 212.6 259 45.2
Sc03g0008560 Simmondsia chinensis HOM05D006843 ORTHO05D008517 3.6e-53 212.6 257 45.9
Sed0013659 Sechium edule HOM05D006843 ORTHO05D008517 4.7e-53 212.2 247 47.0
MBI18_g14135_MAGBIO Magnolia biondii HOM05D006843 ORTHO05D008517 6.1e-53 211.8 260 44.2
Cfa020337 Carpinus fangiana HOM05D006843 ORTHO05D008517 8.0e-53 211.5 259 45.2
HanXRQChr11g0337271 Helianthus annuus HOM05D006843 ORTHO05D008517 8.0e-53 211.5 258 43.8
QL08p010009 Quercus lobata HOM05D006843 ORTHO05D008517 8.0e-53 211.5 259 44.4
arahy.Tifrunner.gnm1.ann1.J1CT6Y Arachis hypogaea HOM05D006843 ORTHO05D008517 1.0e-52 211.1 260 47.3
TWI39G1240 Tripterygium wilfordii HOM05D006843 ORTHO05D008517 1.0e-52 211.1 260 45.4
arahy.Tifrunner.gnm1.ann1.Q92UKX Arachis hypogaea HOM05D006843 ORTHO05D008517 1.4e-52 210.7 259 47.1
AUR62015782 Chenopodium quinoa HOM05D006843 ORTHO05D008517 1.8e-52 210.3 250 46.0
PGR083G2310 Punica granatum HOM05D006843 ORTHO05D008517 1.8e-52 210.3 260 45.4
Rhsim06G0217400 Rhododendron simsii HOM05D006843 ORTHO05D008517 2.3e-52 209.9 260 45.8
Haze_09681 Corylus avellana HOM05D006843 ORTHO05D008517 4.0e-52 209.1 259 45.6
Phvul.008G268300 Phaseolus vulgaris HOM05D006843 ORTHO05D008517 6.8e-52 208.4 266 47.0
arahy.Tifrunner.gnm1.ann1.0IA02T Arachis hypogaea HOM05D006843 ORTHO05D008517 8.9e-52 208.0 261 47.1
arahy.Tifrunner.gnm1.ann1.57CCTN Arachis hypogaea HOM05D006843 ORTHO05D008517 8.9e-52 208.0 261 47.1
arahy.Tifrunner.gnm1.ann1.BV1YAY Arachis hypogaea HOM05D006843 ORTHO05D008517 8.9e-52 208.0 261 47.1
arahy.Tifrunner.gnm1.ann1.H57FKH Arachis hypogaea HOM05D006843 ORTHO05D008517 8.9e-52 208.0 261 47.1
CiPaw.12G130200 Carya illinoinensis HOM05D006843 ORTHO05D008517 8.9e-52 208.0 259 45.6
Ca_06326_v3 Cicer arietinum L. HOM05D006843 ORTHO05D008517 8.9e-52 208.0 263 46.0
Hma1.2p1_0673F.1_g201400 Hydrangea macrophylla HOM05D006843 ORTHO05D008517 2.6e-51 206.5 260 44.2
Medtr5g092970 Medicago truncatula HOM05D006843 ORTHO05D008517 2.6e-51 206.5 261 44.1
Lalb_Chr04g0248381 Lupinus albus HOM05D006843 ORTHO05D008517 5.7e-51 205.3 253 47.8
Solyc07g064630.4 Solanum lycopersicum HOM05D006843 ORTHO05D008517 5.7e-51 205.3 263 45.2
MSTRG.6924 Avicennia marina HOM05D006843 ORTHO05D008517 7.5e-51 204.9 262 47.3
CANSAT11G0475 Cannabis sativa HOM05D006843 ORTHO05D008517 7.5e-51 204.9 260 45.8
MD11G1217200 Malus domestica HOM05D006843 ORTHO05D008517 7.5e-51 204.9 261 46.0
TPR.G1211 Trifolium pratense HOM05D006843 ORTHO05D008517 7.5e-51 204.9 262 44.3
LjContig00272g0007634 Lotus japonicus HOM05D006843 ORTHO05D008517 2.2e-50 203.4 264 46.2
PGSC0003DMG402022316 Solanum tuberosum HOM05D006843 ORTHO05D008517 2.8e-50 203.0 264 45.1
Psat2g011720 Pisum sativum HOM05D006843 ORTHO05D008517 1.4e-49 200.7 268 43.3
SGA_v2.0_scaffold165G38275 Striga asiatica HOM05D006843 ORTHO05D008517 1.4e-49 200.7 265 44.5
FAN16G2069 Fragaria x ananassa HOM05D006843 ORTHO05D008517 7.0e-49 198.4 264 45.1
Nitab4.5_0003495g0070 Nicotiana tabacum HOM05D006843 ORTHO05D008517 9.2e-49 198.0 264 44.7
Nitab4.5_0007360g0010 Nicotiana tabacum HOM05D006843 ORTHO05D008517 9.2e-49 198.0 260 44.6
CAN.G337.136 Capsicum annuum HOM05D006843 ORTHO05D008517 1.2e-48 197.6 264 44.3
FAN25G2076 Fragaria x ananassa HOM05D006843 ORTHO05D008517 1.2e-48 197.6 264 44.7
RcHm_v2.0_Chr5g0040061 Rosa chinensis HOM05D006843 ORTHO05D008517 1.2e-48 197.6 244 47.1
EL10Ac4g07802 Beta vulgaris HOM05D006843 ORTHO05D008517 1.6e-48 197.2 256 43.8
HPP92_013325 Vanilla planifolia HOM05D006843 ORTHO05D008517 2.0e-48 196.8 257 43.2
Sopen07g032830 Solanum pennellii HOM05D006843 ORTHO05D008517 3.5e-48 196.1 270 43.3
DCAR_012722 Daucus carota HOM05D006843 ORTHO05D008517 4.5e-48 195.7 256 44.5
FvH4_3g22820 Fragaria vesca HOM05D006843 ORTHO05D008517 7.8e-48 194.9 264 43.9
unitig_8.g4621 Utricularia gibba HOM05D006843 ORTHO05D008517 1.6e-45 187.2 286 39.9
PSO063G3629 Papaver somniferum HOM05D006843 ORTHO05D008517 1.4e-44 184.1 254 42.5
PSO170G2271 Papaver somniferum HOM05D006843 ORTHO05D008517 1.2e-43 181.0 254 41.7
CBR_g34195 Chara braunii HOM05D006843 ORTHO05D008517 1.9e-41 173.7 324 34.9
Lj8A169G88 Lonicera japonica HOM05D006843 ORTHO05D008517 5.4e-41 172.2 290 38.3
AUR62020435 Chenopodium quinoa HOM05D006843 ORTHO05D008517 2.7e-40 169.9 252 42.1
Hma1.2p1_0673F.1_g201390 Hydrangea macrophylla HOM05D006843 ORTHO05D008517 2.3e-39 166.8 260 39.2
Thhalv10026846m.g Eutrema salsugineum HOM05D006843 ORTHO05D008517 4.7e-37 159.1 254 40.2
Atru.chr2.3418 Acer truncatum HOM05D006843 ORTHO05D008517 6.0e-32 142.1 132 53.8
ATR0490G005 Amborella trichopoda HOM05D006843 ORTHO05D008517 3.4e-27 126.3 179 44.1
MCO05G180 Micromonas commoda HOM05D006843 ORTHO05D008517 3.4e-19 99.8 154 38.3
CDE02G2447 Ceratophyllum demersum HOM05D006843 ORTHO05D008517 2.9e-18 96.7 83 53.0
Psat5g064560 Pisum sativum HOM05D006843 ORTHO05D008517 5.4e-17 92.4 84 53.6
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 9.3e-17 91.7 83 56.6
Psat4g156200 Pisum sativum HOM05D006843 ORTHO05D008517 9.3e-17 91.7 84 53.6
Os06g0679700 Oryza sativa ssp. japonica HOM05D006843 ORTHO05D008517 2.7e-16 90.1 83 50.6
Psat7g029280 Pisum sativum HOM05D006843 ORTHO05D008517 7.8e-16 88.6 84 51.2
Hund02000 Selenicereus undatus HOM05D006843 ORTHO05D008517 8.7e-15 85.1 133 37.6
Haze_01866 Corylus avellana HOM05D006843 ORTHO05D008517 1.1e-12 78.2 179 34.6
vmacro11722 Vaccinium macrocarpon HOM05D006843 ORTHO05D008517 2.4e-12 77.0 127 37.8
ATR0926G001 Amborella trichopoda HOM05D006843 ORTHO05D008517 6.6e-07 58.9 56 46.4
Psat3g185160 Pisum sativum HOM05D006843 ORTHO05D008517 6.6e-07 58.9 45 64.4
Psat3g153160 Pisum sativum HOM05D006816 ORTHO05D008517 3.3e-06 56.6 65 50.8


User provided reference genes

Program Settings