Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO232G0122 Selaginella moellendorffii HOM05D006950 ORTHO05D008798 3.8e-193 677.9 333 100.0
Pp3c2_1510 Physcomitrium patens HOM05D006950 ORTHO05D008798 2.7e-90 336.3 293 59.7
Medtr7g007310 Medicago truncatula HOM05D006950 ORTHO05D008798 1.7e-87 327.0 299 55.5
AL7G52300 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 8.3e-87 324.7 299 53.8
PGR142G3639 Punica granatum HOM05D006950 ORTHO05D008798 1.4e-86 323.9 338 52.1
C06p18110 Brassica napus HOM05D006950 ORTHO05D008798 4.1e-86 322.4 324 51.9
Thhalv10027821m.g Eutrema salsugineum HOM05D006950 ORTHO05D008798 7.0e-86 321.6 310 51.9
THA.LOC104805569 Tarenaya hassleriana HOM05D006950 ORTHO05D008798 7.0e-86 321.6 309 52.1
BolC6t37017H Brassica oleracea HOM05D006950 ORTHO05D008798 9.1e-86 321.2 328 50.9
Aa31LG9G17120 Aethionema arabicum HOM05D006950 ORTHO05D008798 1.6e-85 320.5 298 54.4
AL7G52280 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 1.6e-85 320.5 299 54.2
AL7G52430 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 1.6e-85 320.5 299 54.2
BcaC08g44377 Brassica carinata HOM05D006950 ORTHO05D008798 1.6e-85 320.5 324 51.5
Lj1g0016691 Lotus japonicus HOM05D006950 ORTHO05D008798 1.6e-85 320.5 298 55.0
TWI53G1811 Tripterygium wilfordii HOM05D006950 ORTHO05D008798 2.7e-85 319.7 298 54.4
BraA07t29668Z Brassica rapa HOM05D006950 ORTHO05D008798 3.5e-85 319.3 328 50.6
Eucgr.G03073 Eucalyptus grandis HOM05D006950 ORTHO05D008798 3.5e-85 319.3 294 55.1
Gorai.007G181600 Gossypium raimondii HOM05D006950 ORTHO05D008798 3.5e-85 319.3 299 54.5
A07p19680 Brassica napus HOM05D006950 ORTHO05D008798 4.5e-85 318.9 328 50.6
Carub.0007s3770 Capsella rubella HOM05D006950 ORTHO05D008798 4.5e-85 318.9 259 58.7
PGSC0003DMG400026406 Solanum tuberosum HOM05D006950 ORTHO05D008798 4.5e-85 318.9 338 51.5
PSO017G6790 Papaver somniferum HOM05D006950 ORTHO05D008798 7.7e-85 318.2 305 53.8
TPR.G9714 Trifolium pratense HOM05D006950 ORTHO05D008798 1.0e-84 317.8 301 54.8
EL10Ac2g04564 Beta vulgaris HOM05D006950 ORTHO05D008798 1.3e-84 317.4 301 53.5
Glyma.18G296400 Glycine max HOM05D006950 ORTHO05D008798 1.3e-84 317.4 295 55.3
Hma1.2p1_0136F.1_g062250 Hydrangea macrophylla HOM05D006950 ORTHO05D008798 1.7e-84 317.0 336 50.9
TAR629G2916 Trochodendron aralioides HOM05D006950 ORTHO05D008798 2.2e-84 316.6 308 53.9
arahy.Tifrunner.gnm1.ann1.J0JTFL Arachis hypogaea HOM05D006950 ORTHO05D008798 2.9e-84 316.2 307 52.8
arahy.Tifrunner.gnm1.ann1.QXSY6T Arachis hypogaea HOM05D006950 ORTHO05D008798 2.9e-84 316.2 307 52.8
Cc07_g08790 Coffea canephora HOM05D006950 ORTHO05D008798 3.8e-84 315.8 303 54.1
Gohir.D11G169900 Gossypium hirsutum HOM05D006950 ORTHO05D008798 3.8e-84 315.8 299 53.8
Lalb_Chr17g0335791 Lupinus albus HOM05D006950 ORTHO05D008798 3.8e-84 315.8 309 54.4
Gohir.A11G163600 Gossypium hirsutum HOM05D006950 ORTHO05D008798 5.0e-84 315.5 299 53.8
CANSAT78G2296 Cannabis sativa HOM05D006950 ORTHO05D008798 8.5e-84 314.7 332 50.3
GSVIVG01031019001 Vitis vinifera HOM05D006950 ORTHO05D008798 8.5e-84 314.7 308 53.2
Lj4A191T50 Lonicera japonica HOM05D006950 ORTHO05D008798 3.2e-83 312.8 308 53.6
Actinidia36323 Actinidia chinensis HOM05D006950 ORTHO05D008798 4.2e-83 312.4 344 50.0
Oeu007452.1 Olea europaea HOM05D006950 ORTHO05D008798 4.2e-83 312.4 296 53.7
Sopen02g030760 Solanum pennellii HOM05D006950 ORTHO05D008798 4.2e-83 312.4 336 50.9
Ciclev10012146m.g Citrus clementina HOM05D006950 ORTHO05D008798 5.5e-83 312.0 301 52.2
Hund13713 Selenicereus undatus HOM05D006950 ORTHO05D008798 5.5e-83 312.0 297 52.5
Aqoxy3G00267 Aquilegia oxysepala HOM05D006950 ORTHO05D008798 9.4e-83 311.2 313 51.1
Peaxi162Scf00394g00061 Petunia axillaris HOM05D006950 ORTHO05D008798 9.4e-83 311.2 306 52.6
PSO478G4580 Papaver somniferum HOM05D006950 ORTHO05D008798 1.2e-82 310.8 305 54.1
VMungo1383G3190 Vigna mungo HOM05D006950 ORTHO05D008798 1.2e-82 310.8 295 53.2
Thecc.04G133400 Theobroma cacao HOM05D006950 ORTHO05D008798 3.6e-82 309.3 299 52.5
MSTRG.15296 Avicennia marina HOM05D006950 ORTHO05D008798 6.1e-82 308.5 336 49.4
Nitab4.5_0000659g0020 Nicotiana tabacum HOM05D006950 ORTHO05D008798 6.1e-82 308.5 314 52.2
Sp7g03690 Schrenkiella parvula HOM05D006950 ORTHO05D008798 6.1e-82 308.5 259 57.5
Sed0021084 Sechium edule HOM05D006950 ORTHO05D008798 6.1e-82 308.5 294 53.7
CAN.G625.25 Capsicum annuum HOM05D006950 ORTHO05D008798 8.0e-82 308.1 305 52.1
Cpa.g.sc282.6 Carica papaya HOM05D006950 ORTHO05D008798 8.0e-82 308.1 338 50.0
unitig_0.g2608 Utricularia gibba HOM05D005540 ORTHO05D006932 8.0e-82 308.1 300 53.3
Dinv33949 Davidia involucrata HOM05D006950 ORTHO05D008798 1.0e-81 307.8 328 50.3
Nn3g17879 Nelumbo nucifera HOM05D006950 ORTHO05D008798 1.0e-81 307.8 303 52.1
ATR1125G044 Amborella trichopoda HOM05D006950 ORTHO05D008798 2.3e-81 306.6 305 52.1
vmacro05553 Vaccinium macrocarpon HOM05D006950 ORTHO05D008798 3.0e-81 306.2 306 52.6
Migut.L00319 Erythranthe guttata HOM05D006950 ORTHO05D008798 5.2e-81 305.4 316 50.0
Phvul.008G006100 Phaseolus vulgaris HOM05D006950 ORTHO05D008798 5.2e-81 305.4 296 53.0
Prupe.3G142000 Prunus persica HOM05D006950 ORTHO05D008798 6.8e-81 305.1 310 51.0
MBI16_g34414_MAGBIO Magnolia biondii HOM05D006950 ORTHO05D008798 1.2e-80 304.3 308 51.3
Potri.004G099300 Populus trichocarpa HOM05D006950 ORTHO05D008798 1.2e-80 304.3 306 52.0
Atru.chr1.1690 Acer truncatum HOM05D006950 ORTHO05D008798 1.5e-80 303.9 304 51.6
Haze_14155 Corylus avellana HOM05D006950 ORTHO05D008798 4.4e-80 302.4 295 52.9
ECA246G0391 Erigeron canadensis HOM05D006950 ORTHO05D008798 4.4e-80 302.4 293 50.9
Nitab4.5_0000912g0220 Nicotiana tabacum HOM05D006950 ORTHO05D008798 5.7e-80 302.0 351 48.4
HanXRQChr15g0471491 Helianthus annuus HOM05D006950 ORTHO05D008798 7.5e-80 301.6 299 51.8
Manes.02G068900 Manihot esculenta HOM05D006950 ORTHO05D008798 7.5e-80 301.6 304 50.0
MD17G1244700 Malus domestica HOM05D006950 ORTHO05D008798 1.3e-79 300.8 304 52.3
Psat3g205440 Pisum sativum HOM05D006950 ORTHO05D008798 1.7e-79 300.4 307 51.8
CDE06G1236 Ceratophyllum demersum HOM05D006950 ORTHO05D008798 2.8e-79 299.7 301 48.8
Lsat_1_v5_gn_3_79740 Lactuca sativa HOM05D006950 ORTHO05D008798 2.8e-79 299.7 301 52.2
CiPaw.04G042300 Carya illinoinensis HOM05D006950 ORTHO05D008798 4.8e-79 298.9 304 50.7
ClCG03G006740 Citrullus lanatus HOM05D006950 ORTHO05D008798 2.4e-78 296.6 357 47.9
BcaB02g08012 Brassica carinata HOM05D006950 ORTHO05D008798 3.1e-78 296.2 281 54.1
AUR62023300 Chenopodium quinoa HOM05D006950 ORTHO05D008798 4.1e-78 295.8 291 52.9
CsaV3_1G032300 Cucumis sativus L. HOM05D006950 ORTHO05D008798 9.1e-78 294.7 334 48.5
Eucgr.G03074 Eucalyptus grandis HOM05D006950 ORTHO05D008798 2.5e-75 286.6 294 50.0
Sc11g0008340 Simmondsia chinensis HOM05D006950 ORTHO05D008798 4.0e-73 279.3 304 49.7
Duzib138G1034 Durio zibethinus HOM05D006950 ORTHO05D008798 7.8e-69 265.0 257 55.3
Mapoly0010s0040 Marchantia polymorpha HOM05D006950 ORTHO05D008798 7.8e-69 265.0 319 43.6
MELO3C002748.2 Cucumis melo HOM05D006950 ORTHO05D008798 2.9e-63 246.5 283 50.9
Cfa007922 Carpinus fangiana HOM05D006950 ORTHO05D008798 9.2e-62 241.5 321 42.7
Ca_04046_v3 Cicer arietinum L. HOM05D006950 ORTHO05D008798 2.0e-61 240.4 221 54.8
CARHR214230 Cardamine hirsuta HOM05D006950 ORTHO05D008798 3.0e-60 236.5 205 56.1
COL.COLO4_09336 Corchorus olitorius HOM05D006950 ORTHO05D008798 7.3e-59 231.9 231 50.2
Rhsim10G0067400 Rhododendron simsii HOM05D006950 ORTHO05D008798 1.6e-58 230.7 232 51.7
DCAR_017190 Daucus carota HOM05D006950 ORTHO05D008798 1.8e-57 227.3 306 42.5
Cre04.g213100 Chlamydomonas reinhardtii HOM05D006950 ORTHO05D008798 2.2e-55 220.3 304 40.1
AUR62009002 Chenopodium quinoa HOM05D006950 ORTHO05D008798 3.7e-55 219.5 225 50.7
MCO15G495 Micromonas commoda HOM05D006950 ORTHO05D008798 1.4e-54 217.6 252 45.2
QL02p051313 Quercus lobata HOM05D006950 ORTHO05D008798 1.6e-53 214.2 214 53.3
CSS0013921 Camellia sinensis var. sinensis HOM05D006950 ORTHO05D008798 3.5e-53 213.0 217 53.5
CBR_g51039 Chara braunii HOM05D006950 ORTHO05D008798 2.5e-51 206.8 363 33.9
AL686U10010 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 5.2e-49 199.1 299 38.1
AL7G52400 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 8.9e-49 198.4 304 38.8
AT5G38360 Arabidopsis thaliana HOM05D006950 ORTHO05D008798 2.2e-47 193.7 188 54.3
Sabra04G0080700 Salix brachista HOM05D006950 ORTHO05D008798 4.3e-43 179.5 185 53.0
Nn3g17880 Nelumbo nucifera HOM05D006950 ORTHO05D008798 1.5e-40 171.0 176 51.1
arahy.Tifrunner.gnm1.ann1.IRCK44 Arachis hypogaea HOM05D006950 ORTHO05D008798 5.4e-38 162.5 179 49.2
PRCOL_00005525 Prasinoderma coloniale HOM05D006950 ORTHO05D008798 9.6e-35 151.8 341 32.8
AagrBONN_evm.TU.Sc2ySwM_362.1440 Anthoceros agrestis HOM05D006950 ORTHO05D008798 1.7e-31 141.0 130 56.9
CDE12G0582 Ceratophyllum demersum HOM05D006950 ORTHO05D008798 3.8e-31 139.8 289 31.1
arahy.Tifrunner.gnm1.ann1.J8JPII Arachis hypogaea HOM05D006950 ORTHO05D008798 6.2e-26 122.5 192 38.5
arahy.Tifrunner.gnm1.ann1.5L16AK Arachis hypogaea HOM05D006950 ORTHO05D008798 1.8e-25 120.9 196 35.7
AagrBONN_evm.TU.Sc2ySwM_368.701 Anthoceros agrestis HOM05D006950 ORTHO05D008798 2.2e-23 114.0 275 27.3
arahy.Tifrunner.gnm1.ann1.BFZE3W Arachis hypogaea HOM05D006950 ORTHO05D008798 9.6e-19 98.6 94 57.4
Ca_04053_v3 Cicer arietinum L. HOM05D006950 ORTHO05D008798 9.6e-19 98.6 86 53.5
AL7G52260 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 2.8e-18 97.1 93 52.7
Os04g0381400 Oryza sativa ssp. japonica HOM05D006950 ORTHO05D008798 1.8e-17 94.4 118 47.5
Glyma.08G365850 Glycine max HOM05D006950 ORTHO05D008798 4.0e-17 93.2 93 48.4
QL02p051310 Quercus lobata HOM05D006950 ORTHO05D008798 9.0e-17 92.0 85 48.2
Solyc02g086080.4 Solanum lycopersicum HOM05D006950 ORTHO05D008798 3.2e-14 83.6 76 48.7
CSS0023207 Camellia sinensis var. sinensis HOM05D006950 ORTHO05D008798 3.5e-13 80.1 117 44.4
Glyma.08G247700 Glycine max HOM05D000224 ORTHO05D001489 5.0e-07 59.7 156 29.5
Mapoly0025s0077 Marchantia polymorpha HOM05D000224 ORTHO05D001489 1.4e-06 58.2 168 30.4
Mapoly0069s0018 Marchantia polymorpha HOM05D000224 ORTHO05D001489 2.5e-06 57.4 114 33.3
RcHm_v2.0_Chr1g0329951 Rosa chinensis HOM05D000224 ORTHO05D000337 3.2e-06 57.0 131 33.6
Os01g0934900 Oryza sativa ssp. japonica HOM05D000224 ORTHO05D000337 4.2e-06 56.6 112 35.7
EL10Ac6g13209 Beta vulgaris HOM05D000224 ORTHO05D000337 5.5e-06 56.2 112 32.1
HPP92_007541 Vanilla planifolia HOM05D000224 ORTHO05D002442 7.2e-06 55.8 111 34.2
Sed0006281 Sechium edule HOM05D000224 ORTHO05D000337 9.3e-06 55.5 109 32.1
SEGI_11267 Sequoiadendron giganteum HOM05D000224 ORTHO05D002442 9.3e-06 55.5 112 32.1
SEGI_27361 Sequoiadendron giganteum HOM05D000224 ORTHO05D002442 9.3e-06 55.5 112 32.1


User provided reference genes

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