Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO232G0033 Selaginella moellendorffii HOM05D005534 ORTHO05D006642 5.9e-169 597.4 299 100.0
ClCG08G000650 Citrullus lanatus HOM05D005534 ORTHO05D006642 2.9e-107 392.5 299 62.9
CsaV3_5G040210 Cucumis sativus L. HOM05D005534 ORTHO05D006642 6.4e-107 391.3 299 62.9
Nn1g07947 Nelumbo nucifera HOM05D005534 ORTHO05D006642 5.5e-106 388.3 302 61.3
Sopen10g005920 Solanum pennellii HOM05D005534 ORTHO05D006642 2.7e-105 386.0 299 60.9
Manes.18G119700 Manihot esculenta HOM05D005534 ORTHO05D006642 3.5e-105 385.6 298 63.4
PGSC0003DMG401019416 Solanum tuberosum HOM05D005534 ORTHO05D006642 3.5e-105 385.6 299 60.5
Atru.chr13.2420 Acer truncatum HOM05D005534 ORTHO05D006642 4.6e-105 385.2 299 62.5
Solyc10g012160.3 Solanum lycopersicum HOM05D005534 ORTHO05D006642 7.9e-105 384.4 299 60.5
QL09p004039 Quercus lobata HOM05D005534 ORTHO05D006642 1.0e-104 384.0 300 61.0
Ciclev10020832m.g Citrus clementina HOM05D005534 ORTHO05D006642 1.3e-104 383.6 301 61.8
MSTRG.6297 Avicennia marina HOM05D005534 ORTHO05D006642 2.3e-104 382.9 299 62.2
CiPaw.04G011000 Carya illinoinensis HOM05D005534 ORTHO05D006642 3.0e-104 382.5 303 60.7
Rhsim12G0004300 Rhododendron simsii HOM05D005534 ORTHO05D006642 3.9e-104 382.1 296 63.5
Migut.J01545 Erythranthe guttata HOM05D005534 ORTHO05D006642 5.1e-104 381.7 300 62.3
Lalb_Chr07g0177551 Lupinus albus HOM05D005534 ORTHO05D006642 5.1e-104 381.7 299 60.9
TWI18G0032 Tripterygium wilfordii HOM05D005534 ORTHO05D006642 5.1e-104 381.7 300 61.3
Mapoly0125s0040 Marchantia polymorpha HOM05D005534 ORTHO05D006642 6.7e-104 381.3 302 59.3
Pp3c3_32560 Physcomitrium patens HOM05D005534 ORTHO05D006642 8.7e-104 380.9 306 60.5
GSVIVG01036434001 Vitis vinifera HOM05D005534 ORTHO05D006642 8.7e-104 380.9 299 62.2
Eucgr.F04073 Eucalyptus grandis HOM05D005534 ORTHO05D006642 1.1e-103 380.6 303 60.7
Nitab4.5_0000731g0130 Nicotiana tabacum HOM05D005534 ORTHO05D006642 1.1e-103 380.6 299 60.5
CAN.G911.34 Capsicum annuum HOM05D005534 ORTHO05D006642 1.5e-103 380.2 299 59.5
Duzib177G1179 Durio zibethinus HOM05D005534 ORTHO05D006642 1.5e-103 380.2 299 62.2
Medtr3g005730 Medicago truncatula HOM05D005534 ORTHO05D006642 1.5e-103 380.2 303 60.7
RcHm_v2.0_Chr7g0231231 Rosa chinensis HOM05D005534 ORTHO05D006642 1.9e-103 379.8 299 61.5
Haze_13929 Corylus avellana HOM05D005534 ORTHO05D006642 2.5e-103 379.4 315 60.3
Gohir.D13G120700 Gossypium hirsutum HOM05D005534 ORTHO05D006642 2.5e-103 379.4 300 61.3
Nitab4.5_0006008g0020 Nicotiana tabacum HOM05D005534 ORTHO05D006642 4.3e-103 378.6 299 59.9
PSO017G6214 Papaver somniferum HOM05D005534 ORTHO05D006642 5.6e-103 378.3 297 60.9
Lj3g0019199 Lotus japonicus HOM05D005534 ORTHO05D006642 7.4e-103 377.9 303 60.7
Sc19g0002770 Simmondsia chinensis HOM05D005534 ORTHO05D006642 7.4e-103 377.9 300 61.0
Thecc.08G173200 Theobroma cacao HOM05D005534 ORTHO05D006642 7.4e-103 377.9 299 60.5
HPP92_005621 Vanilla planifolia HOM05D005534 ORTHO05D006642 7.4e-103 377.9 297 60.6
AUR62026718 Chenopodium quinoa HOM05D005534 ORTHO05D006642 1.3e-102 377.1 301 60.1
FvH4_5g33060 Fragaria vesca HOM05D005534 ORTHO05D006642 2.1e-102 376.3 299 61.2
Duzib177G1161 Durio zibethinus HOM05D005534 ORTHO05D006642 4.8e-102 375.2 300 62.0
Prupe.1G530500 Prunus persica HOM05D005534 ORTHO05D006642 4.8e-102 375.2 303 59.7
Cc00_g25290 Coffea canephora HOM05D005534 ORTHO05D006642 1.1e-101 374.0 299 60.2
Glyma.12G242500 Glycine max HOM05D005534 ORTHO05D006642 1.1e-101 374.0 303 62.4
Potri.013G101700 Populus trichocarpa HOM05D005534 ORTHO05D006642 1.1e-101 374.0 298 60.4
THA.LOC104800087 Tarenaya hassleriana HOM05D005534 ORTHO05D006642 1.1e-101 374.0 299 60.2
Glyma.04G257200 Glycine max HOM05D005534 ORTHO05D006642 1.8e-101 373.2 301 62.5
MBI06_g06677_MAGBIO Magnolia biondii HOM05D005534 ORTHO05D006642 2.4e-101 372.9 290 61.7
Zm00001eb411080 Zea mays HOM05D005534 ORTHO05D006642 2.4e-101 372.9 298 60.1
Actinidia23022 Actinidia chinensis HOM05D005534 ORTHO05D006642 3.1e-101 372.5 299 61.2
BcaNung06443 Brassica carinata HOM05D005534 ORTHO05D006642 3.1e-101 372.5 304 61.2
BcaNung06107 Brassica carinata HOM05D005534 ORTHO05D006642 5.3e-101 371.7 301 60.8
Thhalv10007396m.g Eutrema salsugineum HOM05D005534 ORTHO05D006642 5.3e-101 371.7 300 61.0
MD15G1399100 Malus domestica HOM05D005534 ORTHO05D006642 5.3e-101 371.7 302 60.9
Sp1g20290 Schrenkiella parvula HOM05D005534 ORTHO05D006642 5.3e-101 371.7 300 61.0
TAR381G0138 Trochodendron aralioides HOM05D005534 ORTHO05D006642 5.3e-101 371.7 299 59.5
Carub.0001s2231 Capsella rubella HOM05D005534 ORTHO05D006642 6.9e-101 371.3 305 59.7
Hund26700 Selenicereus undatus HOM05D005534 ORTHO05D006642 6.9e-101 371.3 299 60.2
AL1G36350 Arabidopsis lyrata HOM05D005534 ORTHO05D006642 9.0e-101 370.9 304 59.9
MD04G1240000 Malus domestica HOM05D005534 ORTHO05D006642 9.0e-101 370.9 301 59.5
CDE02G4760 Ceratophyllum demersum HOM05D005534 ORTHO05D006642 1.2e-100 370.5 300 59.7
TPR.G25542 Trifolium pratense HOM05D005534 ORTHO05D006642 1.2e-100 370.5 304 59.2
Phvul.005G001600 Phaseolus vulgaris HOM05D005534 ORTHO05D006642 2.0e-100 369.8 306 61.1
VMungo1080G0932 Vigna mungo HOM05D005534 ORTHO05D006642 2.6e-100 369.4 306 60.5
SalBow6G6434 Salvia bowleyana HOM05D005534 ORTHO05D006642 3.4e-100 369.0 323 57.6
CARHR023160 Cardamine hirsuta HOM05D005534 ORTHO05D006642 4.5e-100 368.6 304 59.5
vmacro00924 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 4.5e-100 368.6 291 61.2
Lsat_1_v5_gn_5_78481 Lactuca sativa HOM05D005534 ORTHO05D006642 1.0e-99 367.5 299 59.5
MD08G1215200 Malus domestica HOM05D005534 ORTHO05D006642 1.3e-99 367.1 302 59.9
AT1G22800 Arabidopsis thaliana HOM05D005534 ORTHO05D006642 1.7e-99 366.7 304 58.9
EL10Ac1g01529 Beta vulgaris HOM05D005534 ORTHO05D006642 1.7e-99 366.7 301 59.5
QL09p002970 Quercus lobata HOM05D005534 ORTHO05D006642 2.2e-99 366.3 288 60.4
Peaxi162Scf00065g00017 Petunia axillaris HOM05D005534 ORTHO05D006642 2.9e-99 365.9 297 59.3
ECA234G3974 Erigeron canadensis HOM05D005534 ORTHO05D006642 3.8e-99 365.5 299 58.5
Gorai.013G134900 Gossypium raimondii HOM05D005534 ORTHO05D006642 6.5e-99 364.8 327 56.3
CSS0044704 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 1.4e-98 363.6 300 60.3
A09p41950 Brassica napus HOM05D005534 ORTHO05D006642 2.5e-98 362.8 313 58.8
PGR044G1073 Punica granatum HOM05D005534 ORTHO05D006642 4.2e-98 362.1 330 56.4
arahy.Tifrunner.gnm1.ann1.H1ATJ8 Arachis hypogaea HOM05D005534 ORTHO05D006642 6.0e-97 358.2 304 59.5
Aqoxy2G03821 Aquilegia oxysepala HOM05D005534 ORTHO05D006642 1.3e-96 357.1 294 57.8
Dinv18373 Davidia involucrata HOM05D005534 ORTHO05D006642 3.0e-96 355.9 349 52.7
COL.COLO4_05589 Corchorus olitorius HOM05D005534 ORTHO05D006642 1.5e-95 353.6 303 59.7
Oeu034751.1 Olea europaea HOM05D005534 ORTHO05D006642 4.3e-95 352.1 347 53.0
Oeu034752.2 Olea europaea HOM05D005534 ORTHO05D006642 4.3e-95 352.1 347 53.0
BolC5t30885H Brassica oleracea HOM05D005534 ORTHO05D006642 9.7e-95 350.9 301 58.1
CBR_g29440 Chara braunii HOM05D000921 ORTHO05D004153 8.2e-94 347.8 301 55.5
BraA09t39683Z Brassica rapa HOM05D005534 ORTHO05D006642 1.8e-93 346.7 323 56.3
Psat1g000160 Pisum sativum HOM05D005534 ORTHO05D006642 4.5e-92 342.0 273 61.5
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 7.2e-90 334.7 262 61.5
arahy.Tifrunner.gnm1.ann1.A8RPUL Arachis hypogaea HOM05D005534 ORTHO05D006642 1.6e-89 333.6 352 51.1
Gohir.A13G117400 Gossypium hirsutum HOM05D005534 ORTHO05D006642 2.1e-89 333.2 265 61.1
PSO170G0367 Papaver somniferum HOM05D005534 ORTHO05D006642 2.1e-89 333.2 267 59.6
Ca_13980_v3 Cicer arietinum L. HOM05D005534 ORTHO05D006642 1.0e-88 330.9 279 59.1
MELO3C022197.2 Cucumis melo HOM05D005534 ORTHO05D006642 4.3e-87 325.5 316 54.1
Aa31LG7G6790 Aethionema arabicum HOM05D005534 ORTHO05D006642 2.2e-86 323.2 328 52.1
HPP92_005624 Vanilla planifolia HOM05D005534 ORTHO05D006642 5.9e-84 315.1 236 63.1
AUR62013571 Chenopodium quinoa HOM05D005534 ORTHO05D006642 5.5e-82 308.5 278 54.0
Sabra13G0088100 Salix brachista HOM05D005534 ORTHO05D006642 1.7e-78 297.0 262 55.7
SGA_v2.0_scaffold69G23189 Striga asiatica HOM05D005534 ORTHO05D006642 2.2e-78 296.6 269 56.1
unitig_899.g15650 Utricularia gibba HOM05D005534 ORTHO05D006642 3.5e-76 289.3 199 66.3
C05p21900 Brassica napus HOM05D005534 ORTHO05D006642 4.2e-74 282.3 232 59.1
Cre13.g584750 Chlamydomonas reinhardtii HOM05D005534 ORTHO05D006642 2.3e-72 276.6 345 43.5
Lj1A290T42 Lonicera japonica HOM05D005534 ORTHO05D006642 5.2e-72 275.4 204 62.3
Gohir.A13G117500 Gossypium hirsutum HOM05D005534 ORTHO05D006642 2.2e-70 270.0 260 53.8
SHI08987 Sapria himalayana HOM05D005534 ORTHO05D006642 4.8e-70 268.9 269 50.9
ATR0681G326 Amborella trichopoda HOM05D005534 ORTHO05D006642 2.4e-69 266.5 211 60.2
Sed0013677 Sechium edule HOM05D005534 ORTHO05D006642 5.0e-67 258.8 214 59.3
FAN18G2794 Fragaria x ananassa HOM05D005534 ORTHO05D006642 8.5e-67 258.1 263 51.3
AagrBONN_evm.TU.Sc2ySwM_117.1319 Anthoceros agrestis HOM05D005534 ORTHO05D006642 1.1e-66 257.7 218 58.3
HPP92_005612 Vanilla planifolia HOM05D005534 ORTHO05D006642 2.5e-66 256.5 200 60.5
vmacro22753 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 2.4e-61 240.0 301 44.5
Cpa.g.sc438.5 Carica papaya HOM05D005534 ORTHO05D006642 2.1e-57 226.9 301 43.9
PRCOL_00005850 Prasinoderma coloniale HOM05D005534 ORTHO05D006642 6.8e-56 221.9 285 44.9
Potri.013G101900 Populus trichocarpa HOM05D005534 ORTHO05D006642 5.7e-55 218.8 197 54.8
Lj1A297T60 Lonicera japonica HOM05D005534 ORTHO05D006642 5.7e-47 192.2 148 57.4
CANSAT25G1380 Cannabis sativa HOM05D005534 ORTHO05D006642 2.2e-46 190.3 132 66.7
Cfa025826 Carpinus fangiana HOM05D005534 ORTHO05D006642 2.0e-44 183.7 312 34.6
TPR.G30718 Trifolium pratense HOM05D005534 ORTHO05D006642 5.8e-39 165.6 247 38.9
Hma1.2p1_0708F.1_g207140 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 1.3e-38 164.5 116 67.2
SEGI_21404 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 1.1e-37 161.4 128 58.6
C07p20870 Brassica napus HOM05D005534 ORTHO05D006642 5.4e-37 159.1 124 64.5
BolC7t42620H Brassica oleracea HOM05D005534 ORTHO05D006642 5.4e-37 159.1 124 64.5
BcaC06g34996 Brassica carinata HOM05D005534 ORTHO05D006642 1.7e-35 154.1 123 62.6
Hma1.2p1_0708F.1_g207130 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 5.6e-34 149.1 120 58.3
Zm00001eb320410 Zea mays HOM05D005534 ORTHO05D006642 3.1e-32 143.3 135 51.9
CANSAT25G1946 Cannabis sativa HOM05D005534 ORTHO05D006642 6.8e-32 142.1 139 50.4
Os12g0203100 Oryza sativa ssp. japonica HOM05D005534 ORTHO05D006642 3.7e-30 136.3 135 49.6
A07p14190 Brassica napus HOM05D005534 ORTHO05D006642 5.4e-29 132.5 143 53.1
CSS0018807 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 6.0e-28 129.0 198 39.9
Lj1A297G57 Lonicera japonica HOM05D005534 ORTHO05D006642 2.3e-27 127.1 86 70.9
CSS0033231 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 9.5e-26 121.7 160 45.0
Glyma.04G256001 Glycine max HOM05D005534 ORTHO05D006642 1.4e-16 91.3 113 48.7
MCO12G480 Micromonas commoda HOM05D005534 ORTHO05D006642 2.9e-14 83.6 111 43.2
HanXRQChr11g0339001 Helianthus annuus HOM05D005534 ORTHO05D006642 1.2e-12 78.2 55 67.3
Lsat_1_v5_gn_2_74121 Lactuca sativa HOM05D000236 ORTHO05D000192 1.7e-11 74.3 42 69.0
SEGI_02632 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 2.5e-10 70.5 64 51.6
FAN08G1090 Fragaria x ananassa HOM05D005534 ORTHO05D006642 4.8e-09 66.2 63 49.2
A07p14200 Brassica napus HOM05D002040 ORTHO05D006642 1.4e-08 64.7 76 44.7
unitig_899.g15651 Utricularia gibba HOM05D005534 ORTHO05D006642 2.9e-06 57.0 52 53.8


User provided reference genes

Program Settings