Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO232G0004 Selaginella moellendorffii HOM05D006042 ORTHO05D007658 5.2e-148 527.7 271 100.0
Mapoly0019s0052 Marchantia polymorpha HOM05D006042 ORTHO05D007658 1.9e-81 306.6 246 67.9
Cfa007944 Carpinus fangiana HOM05D006042 ORTHO05D007658 1.7e-77 293.5 237 64.6
CANSAT64G1085 Cannabis sativa HOM05D006042 ORTHO05D007658 1.2e-75 287.3 196 74.5
Oeu030760.1 Olea europaea HOM05D006042 ORTHO05D007658 2.0e-75 286.6 206 71.4
Zm00001eb042940 Zea mays HOM05D006042 ORTHO05D007658 5.9e-75 285.0 238 63.4
AagrBONN_evm.TU.Sc2ySwM_340.223 Anthoceros agrestis HOM05D000513 ORTHO05D003825 7.7e-75 284.6 175 81.1
ECA232G3341 Erigeron canadensis HOM05D006042 ORTHO05D007658 7.7e-75 284.6 208 70.2
CiPaw.03G059800 Carya illinoinensis HOM05D006042 ORTHO05D007658 1.0e-74 284.3 211 69.7
Ciclev10012434m.g Citrus clementina HOM05D006042 ORTHO05D007658 1.0e-74 284.3 219 65.3
Atru.chr8.825 Acer truncatum HOM05D006042 ORTHO05D007658 1.7e-74 283.5 204 70.6
Nitab4.5_0004721g0010 Nicotiana tabacum HOM05D006042 ORTHO05D007658 2.2e-74 283.1 220 68.6
MD09G1084900 Malus domestica HOM05D006042 ORTHO05D007658 3.8e-74 282.3 206 68.9
HanXRQChr14g0438681 Helianthus annuus HOM05D006042 ORTHO05D007658 5.0e-74 282.0 229 64.6
Prupe.3G239600 Prunus persica HOM05D006042 ORTHO05D007658 5.0e-74 282.0 193 73.1
Glyma.19G045600 Glycine max HOM05D006042 ORTHO05D007658 6.5e-74 281.6 190 74.2
MD17G1074400 Malus domestica HOM05D006042 ORTHO05D007658 6.5e-74 281.6 188 74.5
Manes.02G066700 Manihot esculenta HOM05D006042 ORTHO05D007658 6.5e-74 281.6 205 70.7
Nitab4.5_0002489g0020 Nicotiana tabacum HOM05D006042 ORTHO05D007658 8.5e-74 281.2 220 68.2
Actinidia26288 Actinidia chinensis HOM05D006042 ORTHO05D007658 1.1e-73 280.8 210 68.6
CSS0008868 Camellia sinensis var. sinensis HOM05D006042 ORTHO05D007658 1.1e-73 280.8 202 70.8
COL.COLO4_16190 Corchorus olitorius HOM05D002377 ORTHO05D007658 1.1e-73 280.8 203 70.4
Potri.004G102100 Populus trichocarpa HOM05D006042 ORTHO05D007658 1.5e-73 280.4 206 69.4
Sopen03g006950 Solanum pennellii HOM05D006042 ORTHO05D007658 1.5e-73 280.4 204 69.6
PGSC0003DMG400019582 Solanum tuberosum HOM05D006042 ORTHO05D007658 1.5e-73 280.4 204 69.6
Eucgr.F02481 Eucalyptus grandis HOM05D006042 ORTHO05D007658 2.5e-73 279.6 221 67.4
Lj2g0022623 Lotus japonicus HOM05D006042 ORTHO05D007658 2.5e-73 279.6 198 72.2
Solyc03g034170.4 Solanum lycopersicum HOM05D006042 ORTHO05D007658 2.5e-73 279.6 204 69.6
Aqoxy3G03922 Aquilegia oxysepala HOM05D006042 ORTHO05D007658 3.2e-73 279.3 198 72.2
CAN.G995.2 Capsicum annuum HOM05D006042 ORTHO05D007658 3.2e-73 279.3 202 70.3
Lalb_Chr06g0174661 Lupinus albus HOM05D006042 ORTHO05D007658 3.2e-73 279.3 195 71.8
Medtr6g017260 Medicago truncatula HOM05D006042 ORTHO05D007658 3.2e-73 279.3 230 65.2
Os08g0359000 Oryza sativa ssp. japonica HOM05D006042 ORTHO05D007658 3.2e-73 279.3 182 74.7
Lsat_1_v5_gn_4_153081 Lactuca sativa HOM05D006042 ORTHO05D007658 4.2e-73 278.9 236 62.7
ClCG11G005350 Citrullus lanatus HOM05D006042 ORTHO05D007658 5.5e-73 278.5 195 71.3
MSTRG.2747 Avicennia marina HOM05D006042 ORTHO05D007658 9.4e-73 277.7 204 69.1
Gohir.D11G168732 Gossypium hirsutum HOM05D006042 ORTHO05D007658 9.4e-73 277.7 193 71.0
Gorai.007G180300 Gossypium raimondii HOM05D006042 ORTHO05D007658 9.4e-73 277.7 193 71.0
Sed0018352 Sechium edule HOM05D006042 ORTHO05D007658 9.4e-73 277.7 195 70.8
TWI53G1226 Tripterygium wilfordii HOM05D006042 ORTHO05D007658 9.4e-73 277.7 218 66.1
GSVIVG01036442001 Vitis vinifera HOM05D006042 ORTHO05D007658 9.4e-73 277.7 190 74.2
Potri.017G112700 Populus trichocarpa HOM05D006042 ORTHO05D007658 1.2e-72 277.3 189 74.6
SEGI_07967 Sequoiadendron giganteum HOM05D006042 ORTHO05D007658 1.2e-72 277.3 229 64.6
HPP92_008047 Vanilla planifolia HOM05D006042 ORTHO05D007658 1.6e-72 276.9 196 70.9
CsaV3_5G039130 Cucumis sativus L. HOM05D006042 ORTHO05D007658 2.1e-72 276.6 195 70.3
Duzib138G1312 Durio zibethinus HOM05D006042 ORTHO05D007658 2.1e-72 276.6 231 61.9
Hma1.2p1_0550F.1_g177265 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 2.1e-72 276.6 192 71.9
Psat1g013000 Pisum sativum HOM05D006042 ORTHO05D007658 2.1e-72 276.6 202 70.3
ATR0589G121 Amborella trichopoda HOM05D006042 ORTHO05D007658 2.7e-72 276.2 199 71.4
Gohir.A11G162500 Gossypium hirsutum HOM05D006042 ORTHO05D007658 3.6e-72 275.8 193 70.5
QL02p052540 Quercus lobata HOM05D006042 ORTHO05D007658 3.6e-72 275.8 214 68.2
Ca_30067_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 4.7e-72 275.4 205 68.3
Cc07_g09000 Coffea canephora HOM05D006042 ORTHO05D007658 4.7e-72 275.4 204 69.6
Migut.H00201 Erythranthe guttata HOM05D006042 ORTHO05D007658 8.0e-72 274.6 207 68.1
MBI09_g41181_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 8.0e-72 274.6 181 75.7
PSO063G0034 Papaver somniferum HOM05D006042 ORTHO05D007658 1.8e-71 273.5 203 68.5
VMungo0464G1707 Vigna mungo HOM05D006042 ORTHO05D007658 1.8e-71 273.5 199 69.3
arahy.Tifrunner.gnm1.ann1.TWH6SW Arachis hypogaea HOM05D006042 ORTHO05D007658 3.0e-71 272.7 207 66.7
BcaC08g44400 Brassica carinata HOM05D006042 ORTHO05D007658 3.0e-71 272.7 230 62.2
PGR004G1523 Punica granatum HOM05D006042 ORTHO05D007658 4.0e-71 272.3 231 62.8
TPR.G32447 Trifolium pratense HOM05D006042 ORTHO05D007658 4.0e-71 272.3 228 62.7
AL7G51880 Arabidopsis lyrata HOM05D006042 ORTHO05D007658 5.2e-71 271.9 204 68.6
Thhalv10027870m.g Eutrema salsugineum HOM05D006042 ORTHO05D007658 5.2e-71 271.9 208 66.8
Phvul.004G063000 Phaseolus vulgaris HOM05D006042 ORTHO05D007658 5.2e-71 271.9 202 68.3
SalBow3G2575 Salvia bowleyana HOM05D006042 ORTHO05D007658 5.2e-71 271.9 202 68.8
SalBow3G3727 Salvia bowleyana HOM05D006042 ORTHO05D007658 5.2e-71 271.9 202 68.8
Thecc.04G137400 Theobroma cacao HOM05D006042 ORTHO05D007658 5.2e-71 271.9 194 69.6
PSO782G1563 Papaver somniferum HOM05D006042 ORTHO05D007658 8.8e-71 271.2 207 68.1
THA.LOC104805550 Tarenaya hassleriana HOM05D006042 ORTHO05D007658 8.8e-71 271.2 201 67.7
A07p19810 Brassica napus HOM05D006042 ORTHO05D007658 1.5e-70 270.4 208 66.3
FvH4_6g45340 Fragaria vesca HOM05D006042 ORTHO05D007658 1.5e-70 270.4 194 72.2
FAN09G0627 Fragaria x ananassa HOM05D006042 ORTHO05D007658 1.5e-70 270.4 194 72.2
FAN14G4491 Fragaria x ananassa HOM05D006042 ORTHO05D007658 1.5e-70 270.4 194 72.2
C06p18330 Brassica napus HOM05D006042 ORTHO05D007658 2.6e-70 269.6 202 68.3
BolC6t37045H Brassica oleracea HOM05D006042 ORTHO05D007658 2.6e-70 269.6 202 68.3
Carub.0007s3720 Capsella rubella HOM05D006042 ORTHO05D007658 2.6e-70 269.6 212 65.1
CARHR214100 Cardamine hirsuta HOM05D006042 ORTHO05D007658 2.6e-70 269.6 204 68.1
BraA07t29682Z Brassica rapa HOM05D006042 ORTHO05D007658 3.3e-70 269.2 208 65.9
Sp1g29720 Schrenkiella parvula HOM05D006042 ORTHO05D007658 3.3e-70 269.2 214 66.4
BcaB02g07998 Brassica carinata HOM05D006042 ORTHO05D007658 4.4e-70 268.9 208 66.3
RcHm_v2.0_Chr2g0163121 Rosa chinensis HOM05D006042 ORTHO05D007658 4.4e-70 268.9 194 71.1
FAN05G0122 Fragaria x ananassa HOM05D006042 ORTHO05D007658 5.7e-70 268.5 194 71.6
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 7.5e-70 268.1 212 65.1
Hund16127 Selenicereus undatus HOM05D006042 ORTHO05D007658 7.5e-70 268.1 208 66.3
vmacro18106 Vaccinium macrocarpon HOM05D006042 ORTHO05D007658 2.2e-69 266.5 179 75.4
DCAR_009854 Daucus carota HOM05D006042 ORTHO05D007658 8.2e-69 264.6 193 68.4
Sc10g0001330 Simmondsia chinensis HOM05D006042 ORTHO05D007658 8.2e-69 264.6 210 61.9
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 4.1e-68 262.3 177 74.0
CBR_g44937 Chara braunii HOM05D006042 ORTHO05D007658 5.3e-68 261.9 187 69.0
Pp3c4_3720 Physcomitrium patens HOM05D006042 ORTHO05D007658 7.0e-68 261.5 205 69.8
AUR62014538 Chenopodium quinoa HOM05D006042 ORTHO05D007658 8.5e-66 254.6 168 73.8
FAN02G0945 Fragaria x ananassa HOM05D006042 ORTHO05D007658 3.2e-65 252.7 194 70.1
Rhsim08G0079500 Rhododendron simsii HOM05D006042 ORTHO05D007658 4.2e-65 252.3 188 70.7
AUR62008965 Chenopodium quinoa HOM05D006042 ORTHO05D007658 2.7e-64 249.6 166 72.9
SGA_v2.0_scaffold49G18090 Striga asiatica HOM05D006042 ORTHO05D007658 6.1e-64 248.4 187 68.4
Ca_26178_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 1.8e-63 246.9 188 68.1
arahy.Tifrunner.gnm1.ann1.4I03R9 Arachis hypogaea HOM05D006042 ORTHO05D007658 2.0e-62 243.4 197 63.5
Aa31LG9G16960 Aethionema arabicum HOM05D006042 ORTHO05D007658 1.3e-61 240.7 154 76.0
EL10Ac2g04605 Beta vulgaris HOM05D006042 ORTHO05D007658 2.4e-60 236.5 185 66.5
Sabra04G0078300 Salix brachista HOM05D006042 ORTHO05D007658 7.7e-59 231.5 232 56.0
Dinv34847 Davidia involucrata HOM05D006042 ORTHO05D007658 3.0e-55 219.5 152 73.7
Hma1.2p1_0550F.1_g177260 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 1.5e-54 217.2 149 73.8
CDE09G0042 Ceratophyllum demersum HOM05D006042 ORTHO05D007658 5.7e-54 215.3 196 60.2
Nn3g17761 Nelumbo nucifera HOM05D006042 ORTHO05D007658 7.8e-51 204.9 211 55.0
Peaxi162Scf00751g00624 Petunia axillaris HOM05D006042 ORTHO05D007658 2.3e-47 193.4 127 74.8
Cre16.g665250 Chlamydomonas reinhardtii HOM05D006042 ORTHO05D007658 1.9e-44 183.7 241 46.9
MELO3C022088.2 Cucumis melo HOM05D006042 ORTHO05D007658 2.0e-43 180.3 197 51.8
MBI09_g40289_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 1.3e-42 177.6 134 69.4
MCO16G088 Micromonas commoda HOM05D006042 ORTHO05D007658 3.3e-41 172.9 229 44.5
PRCOL_00000779 Prasinoderma coloniale HOM05D006042 ORTHO05D007658 2.3e-39 166.8 207 45.4
Cpa.g.sc179.22 Carica papaya HOM05D006042 ORTHO05D007658 3.4e-38 162.9 111 69.4
BolC3t18613H Brassica oleracea HOM05D006042 ORTHO05D032368 7.0e-36 155.2 97 77.3
GSVIVG01026074001 Vitis vinifera HOM05D006042 ORTHO05D007658 2.7e-35 153.3 120 66.7
BolC5t30891H Brassica oleracea HOM05D006042 ORTHO05D007658 4.6e-35 152.5 97 76.3
BcaC02g09662 Brassica carinata HOM05D006042 ORTHO05D007658 2.5e-33 146.7 194 46.9
TAR278G0002 Trochodendron aralioides HOM05D006042 ORTHO05D007658 4.3e-33 146.0 122 68.0
unitig_0.g9 Utricularia gibba HOM05D006042 ORTHO05D007658 1.2e-27 127.9 80 75.0
Haze_14131 Corylus avellana HOM05D006042 ORTHO05D007658 7.8e-27 125.2 121 57.9
BolC4t26112H Brassica oleracea HOM05D006042 ORTHO05D007658 2.3e-26 123.6 172 45.3
Cpa.g.sc179.23 Carica papaya HOM05D006042 ORTHO05D007658 1.9e-25 120.6 86 68.6
GSVIVG01027526001 Vitis vinifera HOM05D006042 ORTHO05D007658 5.6e-25 119.0 78 75.6
C04p45290 Brassica napus HOM05D006042 ORTHO05D007658 3.4e-22 109.8 248 33.9
Haze_14130 Corylus avellana HOM05D006042 ORTHO05D007658 8.7e-18 95.1 107 52.3
C02p54890 Brassica napus HOM05D006042 ORTHO05D032368 4.7e-16 89.4 51 82.4
BcaC05g29172 Brassica carinata HOM05D006042 ORTHO05D032368 1.1e-15 88.2 50 82.0
Sabra17G0093400 Salix brachista HOM05D006042 ORTHO05D007658 2.6e-14 83.6 78 60.3
CARHR262580 Cardamine hirsuta HOM05D006042 ORTHO05D007658 9.3e-12 75.1 160 36.9
Ah.16g101960 Amaranthus hybridus HOM05D000095 ORTHO05D000330 6.6e-10 68.9 46 67.4
Phvul.004G063400 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 2.5e-09 67.0 55 61.8
Phvul.004G063200 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 3.6e-08 63.2 47 63.8
Peaxi162Scf00104g00074 Petunia axillaris HOM05D006042 ORTHO05D007658 4.8e-08 62.8 48 62.5
QL02p057613 Quercus lobata HOM05D006042 ORTHO05D007658 4.0e-07 59.7 41 65.9


User provided reference genes

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