Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO232G0003 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 3.7e-157 558.1 275 100.0
SMO241G0030 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 5.1e-135 484.6 297 83.5
AagrBONN_evm.TU.Sc2ySwM_117.3390 Anthoceros agrestis HOM05D004971 ORTHO05D006289 1.3e-74 283.9 256 51.6
Glyma.08G035500 Glycine max HOM05D004971 ORTHO05D006289 1.9e-65 253.4 276 46.4
Mapoly0002s0233 Marchantia polymorpha HOM05D004971 ORTHO05D006289 2.5e-65 253.1 300 45.7
CSS0031404 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 1.3e-64 250.8 275 46.5
CiPaw.03G227700 Carya illinoinensis HOM05D004971 ORTHO05D006289 2.8e-64 249.6 268 45.9
QL01p004043 Quercus lobata HOM05D004971 ORTHO05D006289 3.6e-64 249.2 271 45.0
CANSAT56G2306 Cannabis sativa HOM05D004971 ORTHO05D006289 1.4e-63 247.3 272 47.1
Phvul.002G310900 Phaseolus vulgaris HOM05D004971 ORTHO05D006289 2.4e-63 246.5 275 43.6
Lalb_Chr05g0223101 Lupinus albus HOM05D004971 ORTHO05D006289 4.0e-63 245.7 269 45.0
RcHm_v2.0_Chr2g0091361 Rosa chinensis HOM05D004971 ORTHO05D006289 5.3e-63 245.4 268 46.3
HanXRQChr09g0239411 Helianthus annuus HOM05D004971 ORTHO05D006289 6.9e-63 245.0 277 44.8
Gohir.A07G004400 Gossypium hirsutum HOM05D004971 ORTHO05D006289 9.0e-63 244.6 279 45.9
CANSAT56G1645 Cannabis sativa HOM05D004971 ORTHO05D006289 1.2e-62 244.2 272 46.7
Gorai.001G007500 Gossypium raimondii HOM05D004971 ORTHO05D006289 1.2e-62 244.2 281 45.2
Gohir.D07G007800 Gossypium hirsutum HOM05D004971 ORTHO05D006289 2.0e-62 243.4 281 45.2
ECA240G1764 Erigeron canadensis HOM05D004971 ORTHO05D006289 9.9e-62 241.1 268 46.3
Rhsim03G0239000 Rhododendron simsii HOM05D004971 ORTHO05D006289 9.9e-62 241.1 267 46.8
TPR.G23453 Trifolium pratense HOM05D004971 ORTHO05D006289 9.9e-62 241.1 275 45.5
VMungo0251G3379 Vigna mungo HOM05D004971 ORTHO05D006289 9.9e-62 241.1 276 42.8
Os08g0540500 Oryza sativa ssp. japonica HOM05D004971 ORTHO05D006289 1.3e-61 240.7 268 44.8
Dinv41645 Davidia involucrata HOM05D004971 ORTHO05D006289 1.7e-61 240.4 268 44.4
Sopen05g028390 Solanum pennellii HOM05D004971 ORTHO05D006289 1.7e-61 240.4 274 46.4
Solyc05g050000.3 Solanum lycopersicum HOM05D004971 ORTHO05D006289 2.9e-61 239.6 271 45.8
AL8G25390 Arabidopsis lyrata HOM05D004971 ORTHO05D006289 3.8e-61 239.2 277 43.7
Lj4g0001585 Lotus japonicus HOM05D004971 ORTHO05D006289 3.8e-61 239.2 262 44.7
Prupe.7G224700 Prunus persica HOM05D004971 ORTHO05D006289 3.8e-61 239.2 278 44.6
TAR636G2606 Trochodendron aralioides HOM05D004971 ORTHO05D006289 4.9e-61 238.8 271 45.4
TAR626G1908 Trochodendron aralioides HOM05D001382 ORTHO05D006289 6.4e-61 238.4 271 45.4
Atru.chr7.1418 Acer truncatum HOM05D004971 ORTHO05D006289 8.4e-61 238.0 270 46.3
AT5G51130 Arabidopsis thaliana HOM05D004971 ORTHO05D006289 8.4e-61 238.0 265 43.4
TWI12G1172 Tripterygium wilfordii HOM05D004971 ORTHO05D006289 8.4e-61 238.0 264 45.8
Pp3c17_15270 Physcomitrium patens HOM05D004971 ORTHO05D006289 1.1e-60 237.7 275 45.5
Nn3g18146 Nelumbo nucifera HOM05D004971 ORTHO05D006289 1.4e-60 237.3 276 43.1
Thecc.09G104800 Theobroma cacao HOM05D004971 ORTHO05D006289 1.4e-60 237.3 270 43.3
Medtr8g102950 Medicago truncatula HOM05D004971 ORTHO05D006289 1.9e-60 236.9 263 45.2
SEGI_33858 Sequoiadendron giganteum HOM05D004971 ORTHO05D006289 1.9e-60 236.9 343 37.6
Nitab4.5_0000066g0130 Nicotiana tabacum HOM05D004971 ORTHO05D006289 7.1e-60 235.0 273 43.6
Potri.018G084700 Populus trichocarpa HOM05D004971 ORTHO05D006289 1.6e-59 233.8 271 44.6
Sc08g0007770 Simmondsia chinensis HOM05D004971 ORTHO05D006289 1.6e-59 233.8 275 44.0
MD15G1192600 Malus domestica HOM05D004971 ORTHO05D006289 2.1e-59 233.4 275 43.6
Carub.0008s1117 Capsella rubella HOM05D004971 ORTHO05D006289 2.7e-59 233.0 265 43.0
Aa31LG3G7640 Aethionema arabicum HOM05D004971 ORTHO05D006289 4.6e-59 232.3 277 43.3
FAN19G1252 Fragaria x ananassa HOM05D001382 ORTHO05D001266 6.0e-59 231.9 259 45.2
Sabra18G0073100 Salix brachista HOM05D004971 ORTHO05D006289 6.0e-59 231.9 264 45.8
arahy.Tifrunner.gnm1.ann1.050WC1 Arachis hypogaea HOM05D004971 ORTHO05D006289 1.0e-58 231.1 290 41.4
ClCG06G008900 Citrullus lanatus HOM05D004971 ORTHO05D006289 1.0e-58 231.1 260 46.5
FvH4_1g05710 Fragaria vesca HOM05D004971 ORTHO05D006289 1.0e-58 231.1 266 44.0
Nitab4.5_0003331g0010 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.3e-58 230.7 270 43.0
HPP92_012921 Vanilla planifolia HOM05D004971 ORTHO05D006289 2.3e-58 229.9 277 43.3
Cc06_g10130 Coffea canephora HOM05D004971 ORTHO05D006289 3.0e-58 229.6 259 45.6
HPP92_012900 Vanilla planifolia HOM05D004971 ORTHO05D006289 3.0e-58 229.6 276 42.4
Aqoxy7G01513 Aquilegia oxysepala HOM05D004971 ORTHO05D006289 3.9e-58 229.2 275 42.5
FAN28G1806 Fragaria x ananassa HOM05D001382 ORTHO05D006289 3.9e-58 229.2 263 43.7
Lsat_1_v5_gn_7_41360 Lactuca sativa HOM05D004971 ORTHO05D006289 3.9e-58 229.2 278 43.2
Oeu000366.2 Olea europaea HOM05D004971 ORTHO05D006289 6.6e-58 228.4 291 42.6
FAN23G0317 Fragaria x ananassa HOM05D001382 ORTHO05D006289 8.7e-58 228.0 267 43.1
CARHR256940 Cardamine hirsuta HOM05D004971 ORTHO05D006289 1.1e-57 227.6 270 44.4
FAN26G3039 Fragaria x ananassa HOM05D001382 ORTHO05D001266 1.1e-57 227.6 263 43.7
Hund26242 Selenicereus undatus HOM05D004971 ORTHO05D006289 1.1e-57 227.6 268 43.7
Peaxi162Scf00539g00614 Petunia axillaris HOM05D004971 ORTHO05D006289 1.5e-57 227.3 266 44.0
BcaC01g06076 Brassica carinata HOM05D004971 ORTHO05D006289 1.9e-57 226.9 257 44.4
Eucgr.C03795 Eucalyptus grandis HOM05D004971 ORTHO05D006289 2.5e-57 226.5 276 40.9
Thhalv10014188m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 2.5e-57 226.5 262 43.9
A03p16290 Brassica napus HOM05D004971 ORTHO05D006289 3.3e-57 226.1 256 43.4
GSVIVG01015340001 Vitis vinifera HOM05D004971 ORTHO05D006289 5.6e-57 225.3 275 43.6
Psat7g014440 Pisum sativum HOM05D004971 ORTHO05D006289 1.6e-56 223.8 270 43.7
Sp6g13340 Schrenkiella parvula HOM05D004971 ORTHO05D006289 1.6e-56 223.8 267 43.1
PGSC0003DMG400021659 Solanum tuberosum HOM05D004971 ORTHO05D006289 2.1e-56 223.4 256 45.7
MSTRG.19566 Avicennia marina HOM05D004971 ORTHO05D006289 2.8e-56 223.0 280 43.6
C03p19180 Brassica napus HOM05D004971 ORTHO05D006289 3.6e-56 222.6 274 42.0
Migut.J01131 Erythranthe guttata HOM05D004971 ORTHO05D006289 4.8e-56 222.2 268 42.2
THA.LOC104811095 Tarenaya hassleriana HOM05D004971 ORTHO05D006289 4.8e-56 222.2 277 40.4
PGR102G0147 Punica granatum HOM05D004971 ORTHO05D006289 8.1e-56 221.5 256 45.3
BcaB05g24018 Brassica carinata HOM05D004971 ORTHO05D006289 1.4e-55 220.7 258 43.0
AUR62021639 Chenopodium quinoa HOM05D004971 ORTHO05D006289 1.8e-55 220.3 272 43.0
BraA03t10920Z Brassica rapa HOM05D004971 ORTHO05D006289 2.4e-55 219.9 257 43.2
BcaC01g06098 Brassica carinata HOM05D004971 ORTHO05D006289 3.1e-55 219.5 257 42.4
BolC3t14306H Brassica oleracea HOM05D004971 ORTHO05D006289 3.1e-55 219.5 257 42.4
PSO541G6366 Papaver somniferum HOM05D004971 ORTHO05D006289 4.0e-55 219.2 273 42.5
SGA_v2.0_scaffold20G09148 Striga asiatica HOM05D004971 ORTHO05D006289 9.0e-55 218.0 273 42.9
BcaC03g14623 Brassica carinata HOM05D004971 ORTHO05D006289 1.5e-54 217.2 262 42.7
A02p12480 Brassica napus HOM05D004971 ORTHO05D006289 1.5e-54 217.2 264 41.7
BolC2t08195H Brassica oleracea HOM05D004971 ORTHO05D006289 1.5e-54 217.2 262 42.7
BraA02t06311Z Brassica rapa HOM05D004971 ORTHO05D006289 1.5e-54 217.2 264 41.7
COL.COLO4_34800 Corchorus olitorius HOM05D004971 ORTHO05D006289 1.5e-54 217.2 244 45.1
arahy.Tifrunner.gnm1.ann1.R8N6MQ Arachis hypogaea HOM05D004971 ORTHO05D006289 2.0e-54 216.9 289 39.4
PSO675G4950 Papaver somniferum HOM05D004971 ORTHO05D006289 2.6e-54 216.5 273 42.5
CAN.G399.3 Capsicum annuum HOM05D004971 ORTHO05D006289 3.4e-54 216.1 248 46.0
SGA_v2.0_scaffold22G09903 Striga asiatica HOM05D004971 ORTHO05D006289 9.9e-54 214.5 275 41.8
unitig_748.g8739 Utricularia gibba HOM05D004971 ORTHO05D006289 9.9e-54 214.5 267 42.7
C02p20580 Brassica napus HOM05D004971 ORTHO05D006289 1.7e-53 213.8 262 42.4
Lj7A659G31 Lonicera japonica HOM05D004971 ORTHO05D006289 1.7e-53 213.8 245 44.5
Sed0000382 Sechium edule HOM05D004971 ORTHO05D006289 2.2e-53 213.4 236 46.6
Ciclev10009268m.g Citrus clementina HOM05D004971 ORTHO05D006289 4.9e-53 212.2 271 43.2
HanXRQChr03g0061421 Helianthus annuus HOM05D004971 ORTHO05D006289 4.9e-53 212.2 247 43.7
SHI02711 Sapria himalayana HOM05D004971 ORTHO05D006289 1.9e-52 210.3 280 42.5
CsaV3_1G020790 Cucumis sativus L. HOM05D004971 ORTHO05D006289 3.2e-52 209.5 258 44.6
Lalb_Chr14g0371731 Lupinus albus HOM05D004971 ORTHO05D006289 9.3e-52 208.0 259 42.9
MELO3C024707.2 Cucumis melo HOM05D004971 ORTHO05D006289 1.8e-50 203.8 251 44.6
Actinidia32663 Actinidia chinensis HOM05D004971 ORTHO05D006289 5.1e-50 202.2 271 41.3
vmacro06238 Vaccinium macrocarpon HOM05D004971 ORTHO05D006289 1.1e-47 194.5 304 37.2
AUR62008451 Chenopodium quinoa HOM05D004971 ORTHO05D006289 9.0e-47 191.4 252 40.9
CDE11G0552 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 1.2e-46 191.0 260 39.2
Manes.16G112100 Manihot esculenta HOM05D004971 ORTHO05D006289 5.8e-46 188.7 212 45.8
Oeu017816.1 Olea europaea HOM05D004971 ORTHO05D006289 1.1e-44 184.5 240 39.6
Cfa003218 Carpinus fangiana HOM05D001382 ORTHO05D001266 7.9e-43 178.3 222 41.9
MCO09G154 Micromonas commoda HOM05D004971 ORTHO05D006289 1.3e-42 177.6 272 37.1
DCAR_028679 Daucus carota HOM05D004971 ORTHO05D006289 5.1e-42 175.6 250 39.2
ATR0315G075 Amborella trichopoda HOM05D004971 ORTHO05D006289 3.7e-40 169.5 207 46.4
CBR_g687 Chara braunii HOM05D004971 ORTHO05D006289 1.4e-39 167.5 424 28.1
Nitab4.5_0002165g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 6.5e-37 158.7 276 33.7
Lalb_Chr24g0397391 Lupinus albus HOM05D004971 ORTHO05D006289 3.2e-36 156.4 188 43.1
Duzib150G1337 Durio zibethinus HOM05D004971 ORTHO05D006289 7.2e-36 155.2 197 43.7
CSS0049746 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 1.0e-34 151.4 202 39.1
Thhalv10006518m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 8.7e-34 148.3 215 37.7
Thhalv10027230m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 8.7e-34 148.3 215 37.7
CDE05G3470 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 1.5e-33 147.5 110 59.1
Thhalv10026861m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 7.4e-33 145.2 215 36.7
Thhalv10027410m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 7.4e-33 145.2 215 36.7
MD02G1058100 Malus domestica HOM05D004971 ORTHO05D006289 1.1e-31 141.4 244 31.6
Thhalv10027350m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.8e-31 140.6 239 34.7
Cre15.g636450 Chlamydomonas reinhardtii HOM05D004971 ORTHO05D006289 3.1e-31 139.8 382 30.1
PRCOL_00000240 Prasinoderma coloniale HOM05D004971 ORTHO05D006289 5.1e-26 122.5 313 29.7
EL10Ac8g18422 Beta vulgaris HOM05D004971 ORTHO05D006289 2.5e-25 120.2 135 43.7
Zm00001eb198370 Zea mays HOM05D004971 ORTHO05D006289 1.4e-23 114.4 161 41.0
Ca_17315_v3 Cicer arietinum L. HOM05D004971 ORTHO05D006289 5.3e-23 112.5 167 37.7
Lj4g0009518 Lotus japonicus HOM05D004971 ORTHO05D006289 3.9e-18 96.3 76 55.3
arahy.Tifrunner.gnm1.ann1.D57MTL Arachis hypogaea HOM05D004971 ORTHO05D006289 5.1e-18 95.9 150 33.3
arahy.Tifrunner.gnm1.ann1.2J0XRF Arachis hypogaea HOM05D004971 ORTHO05D006289 6.3e-16 89.0 149 34.9
CSS0032398 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 1.8e-15 87.4 63 60.3
MBI04_g02609_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D000022 1.8e-15 87.4 140 40.7
Cpa.g.sc40.24 Carica papaya HOM05D004971 ORTHO05D006289 1.9e-12 77.4 49 61.2
Haze_02526 Corylus avellana HOM05D004971 ORTHO05D006289 4.2e-12 76.3 132 34.1
Actinidia07401 Actinidia chinensis HOM05D004971 ORTHO05D006289 1.6e-11 74.3 56 57.1
Nitab4.5_0002165g0090 Nicotiana tabacum HOM05D004971 ORTHO05D006289 2.1e-11 73.9 52 59.6
Haze_02523 Corylus avellana HOM05D004971 ORTHO05D006289 2.3e-10 70.5 108 38.0
Lalb_Chr24g0397371 Lupinus albus HOM05D004971 ORTHO05D006289 2.3e-10 70.5 140 34.3
MBI19_g24589_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 4.1e-07 59.7 63 44.4
MBI19_g42779_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 4.1e-07 59.7 102 32.4
Nitab4.5_0001706g0070 Nicotiana tabacum HOM05D004971 ORTHO05D006289 3.5e-06 56.6 62 38.7


User provided reference genes

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