Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO230G0075 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 2.4e-237 825.1 407 100.0
SMO165G0061 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 2.5e-130 469.5 386 60.9
AagrBONN_evm.TU.Sc2ySwM_344.736 Anthoceros agrestis HOM05D004508 ORTHO05D005180 8.2e-121 438.0 370 57.3
SEGI_30484 Sequoiadendron giganteum HOM05D004508 ORTHO05D005180 5.5e-117 425.2 387 54.0
Mapoly0014s0047 Marchantia polymorpha HOM05D004508 ORTHO05D005180 6.1e-116 421.8 388 52.3
Pp3c2_10920 Physcomitrium patens HOM05D004508 ORTHO05D005180 5.9e-111 405.2 374 52.9
A09p27030 Brassica napus HOM05D004508 ORTHO05D005180 4.4e-106 389.0 360 50.0
BraA09t38274Z Brassica rapa HOM05D004508 ORTHO05D005180 4.4e-106 389.0 360 50.0
BcaC04g21205 Brassica carinata HOM05D004508 ORTHO05D005180 6.3e-105 385.2 363 49.9
C09p34340 Brassica napus HOM05D004508 ORTHO05D005180 6.3e-105 385.2 363 49.9
BolC9t56277H Brassica oleracea HOM05D004508 ORTHO05D005180 6.3e-105 385.2 363 49.9
SGA_v2.0_scaffold25G11118 Striga asiatica HOM05D004508 ORTHO05D005180 8.2e-105 384.8 370 51.6
Sp6g05370 Schrenkiella parvula HOM05D004508 ORTHO05D005180 2.4e-104 383.3 363 50.1
SGA_v2.0_scaffold146G36178 Striga asiatica HOM05D004508 ORTHO05D005180 7.0e-104 381.7 370 51.6
CARHR254050 Cardamine hirsuta HOM05D004508 ORTHO05D005180 2.0e-103 380.2 363 49.6
BcaB01g01727 Brassica carinata HOM05D004508 ORTHO05D005180 2.6e-103 379.8 363 49.9
Pp3c14_15790 Physcomitrium patens HOM05D004508 ORTHO05D005180 2.6e-103 379.8 378 50.5
BraA03t12150Z Brassica rapa HOM05D004508 ORTHO05D005180 3.5e-103 379.4 363 49.9
Thhalv10028714m.g Eutrema salsugineum HOM05D004508 ORTHO05D005180 3.5e-103 379.4 362 50.0
Aa31LG9G10340 Aethionema arabicum HOM05D004508 ORTHO05D005180 7.7e-103 378.3 367 50.4
AagrBONN_evm.TU.Sc2ySwM_344.739 Anthoceros agrestis HOM05D004508 ORTHO05D005180 7.7e-103 378.3 370 51.9
Aa31LG11G5140 Aethionema arabicum HOM05D004508 ORTHO05D005180 1.0e-102 377.9 367 50.4
AL6G47050 Arabidopsis lyrata HOM05D004508 ORTHO05D005180 1.3e-102 377.5 363 49.6
Nitab4.5_0003534g0110 Nicotiana tabacum HOM05D004508 ORTHO05D005180 1.3e-102 377.5 362 50.0
SalBow5G3960 Salvia bowleyana HOM05D004508 ORTHO05D005180 1.3e-102 377.5 373 50.9
CAN.G630.82 Capsicum annuum HOM05D004508 ORTHO05D005180 2.2e-102 376.7 360 49.2
SalBow5G2183 Salvia bowleyana HOM05D004508 ORTHO05D005180 2.2e-102 376.7 373 50.9
AT4G12130 Arabidopsis thaliana HOM05D004508 ORTHO05D005180 5.0e-102 375.6 363 49.3
Carub.0006s3132 Capsella rubella HOM05D004508 ORTHO05D005180 6.5e-102 375.2 362 49.4
BcaB01g02657 Brassica carinata HOM05D004508 ORTHO05D005180 8.5e-102 374.8 363 49.3
Manes.01G073700 Manihot esculenta HOM05D004508 ORTHO05D005180 3.2e-101 372.9 366 50.0
Solyc08g079470.3 Solanum lycopersicum HOM05D004508 ORTHO05D005180 3.2e-101 372.9 385 47.3
ATR0757G012 Amborella trichopoda HOM05D004508 ORTHO05D005180 4.2e-101 372.5 396 50.8
PGSC0003DMG400003935 Solanum tuberosum HOM05D004508 ORTHO05D005180 4.2e-101 372.5 353 49.6
Medtr3g078637 Medicago truncatula HOM05D004508 ORTHO05D005180 7.2e-101 371.7 368 50.8
FAN08G3098 Fragaria x ananassa HOM05D004508 ORTHO05D005180 1.2e-100 370.9 370 50.3
Sopen08g027840 Solanum pennellii HOM05D004508 ORTHO05D005180 1.6e-100 370.5 353 49.9
MSTRG.12061 Avicennia marina HOM05D004508 ORTHO05D005180 2.1e-100 370.2 365 49.3
Dinv37763 Davidia involucrata HOM05D004508 ORTHO05D005180 2.1e-100 370.2 395 48.1
Nitab4.5_0005465g0020 Nicotiana tabacum HOM05D004508 ORTHO05D005180 2.1e-100 370.2 360 49.2
Hund14651 Selenicereus undatus HOM05D004508 ORTHO05D005180 2.1e-100 370.2 366 50.8
Aa31LG11G5170 Aethionema arabicum HOM05D004508 ORTHO05D005180 2.7e-100 369.8 379 48.8
BolC3t15891H Brassica oleracea HOM05D004508 ORTHO05D005180 2.7e-100 369.8 358 49.4
Cc08_g13230 Coffea canephora HOM05D004508 ORTHO05D005180 3.6e-100 369.4 363 51.2
Nitab4.5_0007591g0010 Nicotiana tabacum HOM05D004508 ORTHO05D005180 4.7e-100 369.0 362 48.6
Ca_16218_v3 Cicer arietinum L. HOM05D004508 ORTHO05D005180 6.1e-100 368.6 391 50.6
FvH4_5g00670 Fragaria vesca HOM05D004508 ORTHO05D005180 6.1e-100 368.6 370 50.0
CANSAT21G2188 Cannabis sativa HOM05D004508 ORTHO05D005180 8.0e-100 368.2 366 48.4
arahy.Tifrunner.gnm1.ann1.CN31X8 Arachis hypogaea HOM05D004508 ORTHO05D005180 2.3e-99 366.7 366 49.7
arahy.Tifrunner.gnm1.ann1.VMS6QR Arachis hypogaea HOM05D004508 ORTHO05D005180 2.3e-99 366.7 366 49.7
Eucgr.D01989 Eucalyptus grandis HOM05D004508 ORTHO05D005180 2.3e-99 366.7 364 48.4
vmacro14042 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 2.3e-99 366.7 367 49.0
FAN04G0404 Fragaria x ananassa HOM05D004508 ORTHO05D005180 3.0e-99 366.3 370 49.5
FAN18G1402 Fragaria x ananassa HOM05D004508 ORTHO05D005180 5.2e-99 365.5 370 49.7
Ah.12g058230 Amaranthus hybridus HOM05D004508 ORTHO05D005180 6.7e-99 365.2 360 50.6
EL10Ac5g12616 Beta vulgaris HOM05D004508 ORTHO05D005180 8.8e-99 364.8 381 48.3
BcaC01g04604 Brassica carinata HOM05D004508 ORTHO05D005180 1.1e-98 364.4 359 48.7
Gohir.A12G221000 Gossypium hirsutum HOM05D004508 ORTHO05D005180 1.1e-98 364.4 363 49.0
Gohir.D12G223300 Gossypium hirsutum HOM05D004508 ORTHO05D005180 1.1e-98 364.4 363 49.0
Thecc.03G261800 Theobroma cacao HOM05D004508 ORTHO05D005180 1.1e-98 364.4 365 48.5
HPP92_014947 Vanilla planifolia HOM05D004508 ORTHO05D005180 1.1e-98 364.4 371 48.8
HPP92_014982 Vanilla planifolia HOM05D004508 ORTHO05D005180 1.1e-98 364.4 371 48.8
Glyma.11G029800 Glycine max HOM05D004508 ORTHO05D005180 1.5e-98 364.0 362 50.8
Rhsim07G0101600 Rhododendron simsii HOM05D004508 ORTHO05D005180 1.5e-98 364.0 392 47.4
Gorai.008G239600 Gossypium raimondii HOM05D004508 ORTHO05D005180 2.6e-98 363.2 363 49.0
FAN13G3174 Fragaria x ananassa HOM05D004508 ORTHO05D005180 5.7e-98 362.1 370 48.9
Hma1.2p1_0108F.1_g051860 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 7.4e-98 361.7 379 48.0
Os06g0134800 Oryza sativa ssp. japonica HOM05D004508 ORTHO05D005180 7.4e-98 361.7 387 47.5
Lj2g0024595 Lotus japonicus HOM05D004508 ORTHO05D005180 9.7e-98 361.3 369 50.1
Prupe.5G079500 Prunus persica HOM05D004508 ORTHO05D005180 1.7e-97 360.5 364 50.3
TAR374G1167 Trochodendron aralioides HOM05D004508 ORTHO05D005180 2.8e-97 359.8 360 51.1
Phvul.002G060100 Phaseolus vulgaris HOM05D004508 ORTHO05D005180 3.7e-97 359.4 364 50.3
QL12p014971 Quercus lobata HOM05D004508 ORTHO05D005180 4.8e-97 359.0 394 47.5
Sc07g0009440 Simmondsia chinensis HOM05D004508 ORTHO05D005180 6.3e-97 358.6 379 48.5
CiPaw.11G147500 Carya illinoinensis HOM05D004508 ORTHO05D005180 8.2e-97 358.2 365 49.3
CSS0042805 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 1.1e-96 357.8 391 46.5
ClCG10G003140 Citrullus lanatus HOM05D004508 ORTHO05D005180 1.1e-96 357.8 364 49.7
ECA246G1898 Erigeron canadensis HOM05D004508 ORTHO05D005180 1.4e-96 357.5 378 48.1
Lsat_1_v5_gn_3_3920 Lactuca sativa HOM05D004508 ORTHO05D005180 1.4e-96 357.5 369 48.0
PSO782G0229 Papaver somniferum HOM05D004508 ORTHO05D005180 1.4e-96 357.5 362 50.3
GSVIVG01004911001 Vitis vinifera HOM05D004508 ORTHO05D005180 1.4e-96 357.5 360 49.2
RcHm_v2.0_Chr4g0419741 Rosa chinensis HOM05D004508 ORTHO05D005180 1.8e-96 357.1 370 48.9
RcHm_v2.0_Chr7g0201591 Rosa chinensis HOM05D004508 ORTHO05D005180 1.8e-96 357.1 370 49.2
Hma1.2p1_1654F.1_g295900 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 2.4e-96 356.7 390 46.9
Duzib205G1463 Durio zibethinus HOM05D004508 ORTHO05D005180 4.1e-96 355.9 365 48.5
CSS0027133 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 5.3e-96 355.5 359 48.7
Potri.001G117700 Populus trichocarpa HOM05D004508 ORTHO05D005180 5.3e-96 355.5 362 50.0
Actinidia27434 Actinidia chinensis HOM05D004508 ORTHO05D005180 7.0e-96 355.1 369 48.2
Peaxi162Scf00271g00023 Petunia axillaris HOM05D004508 ORTHO05D005180 1.2e-95 354.4 367 49.3
PGR031G2216 Punica granatum HOM05D004508 ORTHO05D005180 1.6e-95 354.0 371 46.6
CDE04G2826 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 3.5e-95 352.8 385 46.2
MD04G1079500 Malus domestica HOM05D004508 ORTHO05D005180 3.5e-95 352.8 368 48.4
unitig_8.g3903 Utricularia gibba HOM05D004508 ORTHO05D005180 4.5e-95 352.4 360 48.3
Lj8C255T7 Lonicera japonica HOM05D004508 ORTHO05D005180 1.0e-94 351.3 364 48.6
C03p35810 Brassica napus HOM05D004508 ORTHO05D005180 6.5e-94 348.6 325 51.1
TWI60G0362 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 1.1e-93 347.8 362 47.5
Cpa.g.sc29.91 Carica papaya HOM05D004508 ORTHO05D005180 2.5e-93 346.7 370 47.0
Zm00001eb377920 Zea mays HOM05D004508 ORTHO05D005180 2.5e-93 346.7 370 47.0
Atru.chr9.1431 Acer truncatum HOM05D004508 ORTHO05D005180 3.2e-93 346.3 367 47.7
HanXRQChr17g0549071 Helianthus annuus HOM05D004508 ORTHO05D005180 4.2e-93 345.9 369 47.4
TWI81G0341 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 5.5e-93 345.5 363 48.8
CsaV3_3G003200 Cucumis sativus L. HOM05D004508 ORTHO05D005180 1.2e-92 344.4 362 47.8
Sed0020035 Sechium edule HOM05D004508 ORTHO05D005180 2.1e-92 343.6 361 47.6
Ciclev10020216m.g Citrus clementina HOM05D004508 ORTHO05D005180 1.8e-91 340.5 420 44.3
VMungo1215G0237 Vigna mungo HOM05D004508 ORTHO05D005180 1.5e-90 337.4 347 49.9
Lj4g0011407 Lotus japonicus HOM05D004508 ORTHO05D005180 3.3e-90 336.3 364 49.2
AUR62010510 Chenopodium quinoa HOM05D004508 ORTHO05D005180 1.3e-89 334.3 367 47.4
ECA234G2416 Erigeron canadensis HOM05D004508 ORTHO05D005180 2.2e-89 333.6 363 47.9
Gorai.003G166400 Gossypium raimondii HOM05D004508 ORTHO05D005180 2.2e-89 333.6 364 46.7
Haze_02980 Corylus avellana HOM05D004508 ORTHO05D005180 2.8e-89 333.2 386 45.6
Oeu016511.2 Olea europaea HOM05D004508 ORTHO05D005180 9.1e-88 328.2 377 45.1
PSO478G4546 Papaver somniferum HOM05D004508 ORTHO05D005180 5.9e-87 325.5 432 41.4
Sabra01G0090400 Salix brachista HOM05D004508 ORTHO05D005180 7.7e-87 325.1 364 47.3
Lalb_Chr25g0283101 Lupinus albus HOM05D004508 ORTHO05D005180 1.3e-86 324.3 371 46.1
COL.COLO4_23880 Corchorus olitorius HOM05D004508 ORTHO05D005180 4.4e-82 309.3 365 43.6
Psat1g081320 Pisum sativum HOM05D004508 ORTHO05D005180 5.9e-79 298.9 306 51.0
Psat5g109880 Pisum sativum HOM05D004508 ORTHO05D005180 1.0e-78 298.1 282 52.1
CBR_g46688 Chara braunii HOM05D004508 ORTHO05D005180 7.2e-77 292.0 390 40.8
Nn2g12338 Nelumbo nucifera HOM05D004508 ORTHO05D005180 3.4e-74 283.1 290 50.0
C07p28450 Brassica napus HOM05D004508 ORTHO05D005180 5.7e-74 282.3 255 50.6
A03p29560 Brassica napus HOM05D004508 ORTHO05D005180 5.4e-72 275.8 240 52.1
BcaC06g34438 Brassica carinata HOM05D004508 ORTHO05D005180 3.5e-71 273.1 246 50.8
Glyma.01G212000 Glycine max HOM05D004508 ORTHO05D005180 3.5e-71 273.1 250 52.8
BolC7t43385H Brassica oleracea HOM05D004508 ORTHO05D005180 4.5e-71 272.7 239 51.5
VMungo1215G2974 Vigna mungo HOM05D004508 ORTHO05D005180 7.3e-69 265.4 244 52.5
AUR62017391 Chenopodium quinoa HOM05D004508 ORTHO05D005180 9.8e-66 255.0 230 55.7
Dinv39078 Davidia involucrata HOM05D004508 ORTHO05D005180 2.2e-65 253.8 351 40.7
PSO017G0573 Papaver somniferum HOM05D004508 ORTHO05D005180 9.2e-64 248.4 240 51.7
MBI04_g30221_MAGBIO Magnolia biondii HOM05D004508 ORTHO05D005180 2.7e-63 246.9 622 29.1
CiPaw.12G105000 Carya illinoinensis HOM05D004508 ORTHO05D005180 8.6e-62 241.9 387 38.2
Migut.A00834 Erythranthe guttata HOM05D004508 ORTHO05D005180 1.1e-59 235.0 251 45.0
Oeu022318.1 Olea europaea HOM05D004508 ORTHO05D005180 4.0e-59 233.0 243 45.7
MELO3C013985.2 Cucumis melo HOM05D004508 ORTHO05D005180 4.9e-57 226.1 181 59.1
AagrBONN_evm.TU.Sc2ySwM_344.731 Anthoceros agrestis HOM05D004508 ORTHO05D005180 1.0e-54 218.4 215 51.2
Gohir.D03G157900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 2.2e-49 200.7 244 42.2
Eucgr.D02019 Eucalyptus grandis HOM05D004508 ORTHO05D005180 2.1e-47 194.1 356 32.9
TPR.G214 Trifolium pratense HOM05D004508 ORTHO05D005180 5.1e-46 189.5 156 59.6
Gohir.A03G011900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 1.9e-40 171.0 269 40.1
vmacro17466 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 5.8e-34 149.4 122 56.6
MELO3C021762.2 Cucumis melo HOM05D004508 ORTHO05D005180 4.9e-33 146.4 110 62.7
MCO07G558 Micromonas commoda HOM05D004508 ORTHO05D005180 2.7e-31 140.6 397 30.0
PRCOL_00002067 Prasinoderma coloniale HOM05D004508 ORTHO05D005180 2.3e-30 137.5 369 29.5
Lsat_1_v5_gn_3_76480 Lactuca sativa HOM05D004508 ORTHO05D005180 9.9e-26 122.1 221 33.0
Cre10.g459000 Chlamydomonas reinhardtii HOM05D004508 ORTHO05D005180 1.9e-24 117.9 266 28.9
Nn8g40647 Nelumbo nucifera HOM05D004508 ORTHO05D005180 6.2e-20 102.8 177 39.5
BcaC06g35234 Brassica carinata HOM05D004508 ORTHO05D005180 6.9e-19 99.4 68 60.3
CSS0024785 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 9.0e-19 99.0 97 45.4
VMungo1215G1224 Vigna mungo HOM05D004508 ORTHO05D005180 1.7e-17 94.7 117 44.4
Duzib084G0179 Durio zibethinus HOM05D004508 ORTHO05D005180 7.1e-16 89.4 151 34.4
BolC7t43387H Brassica oleracea HOM05D004508 ORTHO05D005180 9.3e-16 89.0 93 47.3
BolC6t40022H Brassica oleracea HOM05D004508 ORTHO05D005180 1.2e-15 88.6 97 43.3
Cfa023844 Carpinus fangiana HOM05D004508 ORTHO05D005180 2.7e-15 87.4 363 24.2
C03p35830 Brassica napus HOM05D004508 ORTHO05D005180 1.3e-14 85.1 93 45.2
C07p28470 Brassica napus HOM05D004508 ORTHO05D005180 1.5e-13 81.6 93 44.1
BolC3t15892H Brassica oleracea HOM05D004508 ORTHO05D005180 7.1e-08 62.8 52 50.0
BcaC06g34436 Brassica carinata HOM05D004508 ORTHO05D005180 7.9e-07 59.3 55 47.3


User provided reference genes

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