Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO230G0058 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 3.9e-146 521.5 280 100.0
SMO230G0121 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 7.4e-81 304.7 314 64.6
SMO367G1068 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 2.2e-77 293.1 292 62.3
CsaV3_2G014020 Cucumis sativus L. HOM05D005355 ORTHO05D006591 1.6e-19 100.9 105 55.2
Sabra02G0066400 Salix brachista HOM05D005355 ORTHO05D006591 1.6e-19 100.9 103 53.4
Gorai.010G049600 Gossypium raimondii HOM05D005355 ORTHO05D006591 2.8e-19 100.1 101 56.4
MELO3C010600.2 Cucumis melo HOM05D005355 ORTHO05D006591 3.6e-19 99.8 105 52.4
Thecc.08G123400 Theobroma cacao HOM05D005355 ORTHO05D006591 3.6e-19 99.8 101 54.5
TWI12G0790 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 3.6e-19 99.8 113 53.1
GSVIVG01008886001 Vitis vinifera HOM05D005355 ORTHO05D006591 4.7e-19 99.4 101 55.4
CDE06G1640 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 6.2e-19 99.0 134 46.3
ClCG08G005570 Citrullus lanatus HOM05D005355 ORTHO05D006591 6.2e-19 99.0 83 63.9
CDE06G0823 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 8.1e-19 98.6 142 43.0
VMungo1309G2754 Vigna mungo HOM05D005355 ORTHO05D006591 8.1e-19 98.6 135 45.9
Duzib093G2154 Durio zibethinus HOM05D005355 ORTHO05D006591 1.1e-18 98.2 101 54.5
Nn5g28219 Nelumbo nucifera HOM05D005355 ORTHO05D006591 1.8e-18 97.4 132 50.0
Sed0010827 Sechium edule HOM05D005355 ORTHO05D006591 1.8e-18 97.4 102 55.9
Cpa.g.sc36.50 Carica papaya HOM05D005355 ORTHO05D006591 2.4e-18 97.1 102 52.0
Haze_00460 Corylus avellana HOM05D005355 ORTHO05D006591 3.1e-18 96.7 103 56.3
Gohir.A06G043600 Gossypium hirsutum HOM05D005355 ORTHO05D006591 3.1e-18 96.7 101 55.4
ATR0104G007 Amborella trichopoda HOM05D005355 ORTHO05D006591 4.0e-18 96.3 103 54.4
arahy.Tifrunner.gnm1.ann1.SCI4MN Arachis hypogaea HOM05D005355 ORTHO05D006591 4.0e-18 96.3 83 60.2
CiPaw.06G029200 Carya illinoinensis HOM05D005355 ORTHO05D006591 4.0e-18 96.3 111 49.5
Cc00_g04310 Coffea canephora HOM05D005355 ORTHO05D006591 4.0e-18 96.3 107 52.3
FAN27G0453 Fragaria x ananassa HOM05D005355 ORTHO05D006591 4.0e-18 96.3 116 47.4
Gohir.A05G234400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 4.0e-18 96.3 97 54.6
Gohir.D05G236700 Gossypium hirsutum HOM05D005355 ORTHO05D006591 4.0e-18 96.3 97 54.6
Gorai.009G245100 Gossypium raimondii HOM05D005355 ORTHO05D006591 4.0e-18 96.3 97 54.6
Lj1g0013612 Lotus japonicus HOM05D005355 ORTHO05D006591 4.0e-18 96.3 99 57.6
Lalb_Chr08g0241491 Lupinus albus HOM05D005355 ORTHO05D006591 4.0e-18 96.3 99 56.6
CiPaw.05G223300 Carya illinoinensis HOM05D005355 ORTHO05D006591 5.2e-18 95.9 114 50.0
Ciclev10000938m.g Citrus clementina HOM05D005355 ORTHO05D006591 5.2e-18 95.9 107 51.4
Potri.002G085000 Populus trichocarpa HOM05D005355 ORTHO05D006591 5.2e-18 95.9 102 51.0
Atru.chr13.1433 Acer truncatum HOM05D005355 ORTHO05D006591 6.8e-18 95.5 102 52.0
arahy.Tifrunner.gnm1.ann1.Y2U2DK Arachis hypogaea HOM05D005355 ORTHO05D006591 6.8e-18 95.5 96 56.2
FAN20G1264 Fragaria x ananassa HOM05D005355 ORTHO05D006591 6.8e-18 95.5 83 60.2
HanXRQChr04g0109451 Helianthus annuus HOM05D005355 ORTHO05D006591 6.8e-18 95.5 126 46.0
CANSAT25G1794 Cannabis sativa HOM05D005355 ORTHO05D006591 8.9e-18 95.1 103 55.3
Glyma.04G250500 Glycine max HOM05D005355 ORTHO05D006591 8.9e-18 95.1 99 55.6
PGR044G2411 Punica granatum HOM05D005355 ORTHO05D006591 8.9e-18 95.1 108 50.0
Ca_15194_v3 Cicer arietinum L. HOM05D005355 ORTHO05D006591 1.2e-17 94.7 104 54.8
FAN15G2971 Fragaria x ananassa HOM05D005355 ORTHO05D006591 1.2e-17 94.7 97 53.6
Phvul.009G124200 Phaseolus vulgaris HOM05D005355 ORTHO05D006591 1.2e-17 94.7 103 51.5
RcHm_v2.0_Chr6g0295601 Rosa chinensis HOM05D005355 ORTHO05D006591 1.2e-17 94.7 102 50.0
Medtr3g072480 Medicago truncatula HOM05D005355 ORTHO05D006591 1.5e-17 94.4 108 49.1
THA.LOC104817273 Tarenaya hassleriana HOM05D005355 ORTHO05D006591 2.0e-17 94.0 101 50.5
TPR.G24014 Trifolium pratense HOM05D005355 ORTHO05D006591 2.0e-17 94.0 96 57.3
Duzib116G0422 Durio zibethinus HOM05D005355 ORTHO05D006591 2.6e-17 93.6 101 53.5
FAN24G2565 Fragaria x ananassa HOM05D005355 ORTHO05D006591 2.6e-17 93.6 83 59.0
Glyma.06G112300 Glycine max HOM05D005355 ORTHO05D006591 2.6e-17 93.6 83 60.2
Psat5g132440 Pisum sativum HOM05D005355 ORTHO05D006591 2.6e-17 93.6 98 56.1
Gohir.D06G044400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 3.4e-17 93.2 101 56.4
Sabra05G0133000 Salix brachista HOM05D005355 ORTHO05D006591 4.4e-17 92.8 102 51.0
Zm00001eb113700 Zea mays HOM05D005355 ORTHO05D006591 4.4e-17 92.8 118 44.9
AagrBONN_evm.TU.Sc2ySwM_362.1810 Anthoceros agrestis HOM05D005355 ORTHO05D006591 5.8e-17 92.4 103 51.5
Manes.18G076200 Manihot esculenta HOM05D005355 ORTHO05D006591 5.8e-17 92.4 101 50.5
QL09p035410 Quercus lobata HOM05D005355 ORTHO05D006591 5.8e-17 92.4 111 47.7
TAR625G0673 Trochodendron aralioides HOM05D005355 ORTHO05D006591 5.8e-17 92.4 106 52.8
Aqoxy6G00187 Aquilegia oxysepala HOM05D005355 ORTHO05D006591 7.6e-17 92.0 119 47.9
EL10Ac1g01045 Beta vulgaris HOM05D005355 ORTHO05D006591 9.9e-17 91.7 103 52.4
MBI06_g20714_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 9.9e-17 91.7 102 55.9
MD00G1157400 Malus domestica HOM05D005355 ORTHO05D006591 1.7e-16 90.9 103 52.4
CSS0006134 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 2.2e-16 90.5 103 50.5
CSS0023513 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 2.2e-16 90.5 103 50.5
MD15G1351600 Malus domestica HOM05D005355 ORTHO05D006591 2.2e-16 90.5 105 48.6
Os11g0544600 Oryza sativa ssp. japonica HOM05D005355 ORTHO05D006591 2.2e-16 90.5 151 38.4
Potri.005G176400 Populus trichocarpa HOM05D005355 ORTHO05D006591 2.2e-16 90.5 103 53.4
TWI56G0611 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 2.9e-16 90.1 113 48.7
MSTRG.326 Avicennia marina HOM05D005355 ORTHO05D006591 3.8e-16 89.7 84 56.0
Lsat_1_v5_gn_5_101461 Lactuca sativa HOM05D005355 ORTHO05D006591 1.1e-15 88.2 109 47.7
Thhalv10011453m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 1.4e-15 87.8 103 50.5
PSO170G1761 Papaver somniferum HOM05D005355 ORTHO05D006591 1.4e-15 87.8 105 49.5
Aa31LG9G14260 Aethionema arabicum HOM05D005355 ORTHO05D006591 1.9e-15 87.4 103 49.5
PSO528G0270 Papaver somniferum HOM05D005355 ORTHO05D006591 1.9e-15 87.4 105 49.5
C06p00770 Brassica napus HOM05D005355 ORTHO05D006591 3.2e-15 86.7 104 50.0
DCAR_011614 Daucus carota HOM05D005355 ORTHO05D006591 3.2e-15 86.7 86 51.2
Sp6g09690 Schrenkiella parvula HOM05D005355 ORTHO05D006591 3.2e-15 86.7 93 53.8
BcaC08g42867 Brassica carinata HOM05D005355 ORTHO05D006591 4.2e-15 86.3 104 50.0
BolC6t35219H Brassica oleracea HOM05D005355 ORTHO05D006591 4.2e-15 86.3 104 50.0
vmacro00824 Vaccinium macrocarpon HOM05D005355 ORTHO05D006591 4.2e-15 86.3 102 46.1
Migut.F01876 Erythranthe guttata HOM05D005355 ORTHO05D006591 5.4e-15 85.9 81 53.1
Eucgr.F04357 Eucalyptus grandis HOM05D005355 ORTHO05D006591 7.1e-15 85.5 102 47.1
Pp3c21_16190 Physcomitrium patens HOM05D005355 ORTHO05D006591 7.1e-15 85.5 76 57.9
SGA_v2.0_scaffold122G33176 Striga asiatica HOM05D005355 ORTHO05D006591 7.1e-15 85.5 76 56.6
AT4G08310 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 9.3e-15 85.1 76 59.2
Sp1g33640 Schrenkiella parvula HOM05D005355 ORTHO05D006591 1.2e-14 84.7 101 48.5
A10p07350 Brassica napus HOM05D005355 ORTHO05D006591 1.6e-14 84.3 99 50.5
BraSC36t46079Z Brassica rapa HOM05D005355 ORTHO05D006591 1.6e-14 84.3 99 50.5
Thhalv10029139m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 1.6e-14 84.3 109 47.7
AL6G42080 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 2.1e-14 84.0 76 59.2
Carub.0006s2687 Capsella rubella HOM05D005355 ORTHO05D006591 2.1e-14 84.0 74 59.5
CARHR036040 Cardamine hirsuta HOM05D005355 ORTHO05D006591 2.1e-14 84.0 102 50.0
Oeu062052.1 Olea europaea HOM05D005355 ORTHO05D006591 2.1e-14 84.0 102 44.1
CAN.G127.21 Capsicum annuum HOM05D005355 ORTHO05D006591 2.7e-14 83.6 121 43.8
CARHR259390 Cardamine hirsuta HOM05D005355 ORTHO05D006591 2.7e-14 83.6 103 48.5
ECA238G0419 Erigeron canadensis HOM05D005355 ORTHO05D006591 2.7e-14 83.6 93 51.6
BcaB07g33934 Brassica carinata HOM05D005355 ORTHO05D006591 3.5e-14 83.2 99 49.5
Nitab4.5_0001803g0130 Nicotiana tabacum HOM05D005355 ORTHO05D006591 4.6e-14 82.8 105 49.5
AL1G52440 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 6.0e-14 82.4 107 45.8
MBI15_g19197_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.3e-13 81.3 83 55.4
MBI15_g20157_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D010248 2.3e-13 80.5 102 50.0
MBI15_g20159_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 3.0e-13 80.1 102 53.9
Hund27026 Selenicereus undatus HOM05D005355 ORTHO05D006591 3.9e-13 79.7 128 43.8
AT1G44780 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 5.1e-13 79.3 102 45.1
COL.COLO4_35946 Corchorus olitorius HOM05D005355 ORTHO05D006591 5.1e-13 79.3 66 66.7
Prupe.1G500200 Prunus persica HOM05D005355 ORTHO05D006591 6.6e-13 79.0 103 49.5
MBI15_g24178_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.1e-12 78.2 102 51.0
SHI29459 Sapria himalayana HOM05D005355 ORTHO05D006591 1.1e-12 78.2 104 45.2
Dinv27329 Davidia involucrata HOM05D005355 ORTHO05D006591 2.5e-12 77.0 102 47.1
Solyc11g012920.3 Solanum lycopersicum HOM05D005355 ORTHO05D006591 5.6e-12 75.9 77 53.2
Sopen11g007660 Solanum pennellii HOM05D005355 ORTHO05D006591 5.6e-12 75.9 77 53.2
Cfa016002 Carpinus fangiana HOM05D005355 ORTHO05D006591 1.6e-11 74.3 84 53.6
Sc01g0001210 Simmondsia chinensis HOM05D005355 ORTHO05D006591 1.8e-10 70.9 82 50.0
FvH4_2g26711 Fragaria vesca HOM05D005355 ORTHO05D006591 2.4e-10 70.5 63 57.1
Lj4A622G14 Lonicera japonica HOM05D005355 ORTHO05D006591 3.1e-10 70.1 82 51.2
CBR_g29492 Chara braunii HOM05D005355 ORTHO05D006591 6.9e-10 68.9 84 47.6
AUR62027892 Chenopodium quinoa HOM05D005355 ORTHO05D006591 6.9e-10 68.9 61 59.0
RhsimUnG0093800 Rhododendron simsii HOM05D005355 ORTHO05D006591 1.5e-09 67.8 82 45.1
AUR62019052 Chenopodium quinoa HOM05D005355 ORTHO05D006591 2.0e-09 67.4 84 52.4
unitig_52.g17510 Utricularia gibba HOM05D005355 ORTHO05D006467 2.0e-09 67.4 61 50.8
Carub.0001s3530 Capsella rubella HOM05D005355 ORTHO05D006591 2.9e-08 63.5 100 39.0
Nitab4.5_0001273g0020 Nicotiana tabacum HOM05D005355 ORTHO05D006591 2.9e-08 63.5 64 56.2
Mapoly0004s0202 Marchantia polymorpha HOM05D005355 ORTHO05D006591 1.1e-07 61.6 83 42.2


User provided reference genes

Program Settings