Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO229G0030 Selaginella moellendorffii HOM05D000787 ORTHO05D001920 1.6e-25 118.6 59 100.0
Hma1.2p1_0248F.1_g102165 Hydrangea macrophylla HOM05D000018 ORTHO05D001920 1.1e-07 59.3 50 52.0
Hma1.2p1_0668F.1_g199800 Hydrangea macrophylla HOM05D000018 ORTHO05D001920 1.1e-07 59.3 50 52.0
HanXRQChr15g0470891 Helianthus annuus HOM05D000787 ORTHO05D001019 4.4e-07 57.4 60 41.7
Lsat_1_v5_gn_7_14360 Lactuca sativa HOM05D000787 ORTHO05D001019 5.7e-07 57.0 60 41.7
MD17G1106300 Malus domestica HOM05D000787 ORTHO05D001019 5.7e-07 57.0 50 46.0
Glyma.15G112700 Glycine max HOM05D000787 ORTHO05D001019 7.4e-07 56.6 55 43.6
Psat5g101720 Pisum sativum HOM05D000787 ORTHO05D001019 7.4e-07 56.6 49 51.0
Aqoxy6G00157 Aquilegia oxysepala HOM05D000018 ORTHO05D001920 9.7e-07 56.2 50 48.0
Aqoxy6G00158 Aquilegia oxysepala HOM05D000018 ORTHO05D001920 9.7e-07 56.2 50 46.0
Ca_16370_v3 Cicer arietinum L. HOM05D000787 ORTHO05D001019 9.7e-07 56.2 50 44.0
Duzib160G0662 Durio zibethinus HOM05D000787 ORTHO05D001019 9.7e-07 56.2 55 43.6
Eucgr.E01689 Eucalyptus grandis HOM05D000018 ORTHO05D001920 9.7e-07 56.2 50 48.0
CSS0022476 Camellia sinensis var. sinensis HOM05D000787 ORTHO05D001019 1.3e-06 55.8 58 44.8
Glyma.09G008400 Glycine max HOM05D000787 ORTHO05D001019 1.3e-06 55.8 55 43.6
Peaxi162Scf00066g00009 Petunia axillaris HOM05D000787 ORTHO05D003730 1.3e-06 55.8 55 47.3
Potri.004G003000 Populus trichocarpa HOM05D000787 ORTHO05D001019 1.3e-06 55.8 55 41.8
Sabra04G0001600 Salix brachista HOM05D000787 ORTHO05D001019 1.3e-06 55.8 55 43.6
TPR.G11202 Trifolium pratense HOM05D000018 ORTHO05D001513 1.3e-06 55.8 53 47.2
VMungo0540G0636 Vigna mungo HOM05D000787 ORTHO05D001019 1.3e-06 55.8 55 41.8
Gorai.010G184900 Gossypium raimondii HOM05D000787 ORTHO05D001019 1.7e-06 55.5 50 46.0
HanXRQChr15g0468621 Helianthus annuus HOM05D000787 ORTHO05D001019 1.7e-06 55.5 57 40.4
MD05G1354000 Malus domestica HOM05D000787 ORTHO05D001019 1.7e-06 55.5 50 48.0
TPR.G27289 Trifolium pratense HOM05D000787 ORTHO05D001019 1.7e-06 55.5 52 42.3
COL.COLO4_31848 Corchorus olitorius HOM05D000787 ORTHO05D001019 2.2e-06 55.1 55 41.8
Duzib235G1309 Durio zibethinus HOM05D000787 ORTHO05D001019 2.2e-06 55.1 55 41.8
ECA240G4727 Erigeron canadensis HOM05D000787 ORTHO05D001019 2.2e-06 55.1 57 38.6
Gohir.A05G173900 Gossypium hirsutum HOM05D000787 ORTHO05D001019 2.2e-06 55.1 55 41.8
Gohir.D05G176900 Gossypium hirsutum HOM05D000787 ORTHO05D001019 2.2e-06 55.1 55 41.8
Gorai.009G182300 Gossypium raimondii HOM05D000787 ORTHO05D001019 2.2e-06 55.1 55 41.8
Medtr3g083370 Medicago truncatula HOM05D000787 ORTHO05D001019 2.2e-06 55.1 50 46.0
Nn1g08702 Nelumbo nucifera HOM05D000018 ORTHO05D001920 2.2e-06 55.1 48 50.0
TAR628G0249 Trochodendron aralioides HOM05D000018 ORTHO05D001920 2.2e-06 55.1 51 45.1
arahy.Tifrunner.gnm1.ann1.42BGRN Arachis hypogaea HOM05D000787 ORTHO05D001019 2.8e-06 54.7 50 44.0
arahy.Tifrunner.gnm1.ann1.78F3YR Arachis hypogaea HOM05D000787 ORTHO05D001019 2.8e-06 54.7 50 44.0
arahy.Tifrunner.gnm1.ann1.GI6PPK Arachis hypogaea HOM05D000787 ORTHO05D001019 2.8e-06 54.7 50 44.0
Manes.16G002300 Manihot esculenta HOM05D000787 ORTHO05D001019 2.8e-06 54.7 55 40.0
SEGI_21684 Sequoiadendron giganteum HOM05D000018 ORTHO05D000872 2.8e-06 54.7 57 40.4
Sc01g0001390 Simmondsia chinensis HOM05D000018 ORTHO05D001920 2.8e-06 54.7 50 48.0
VMungo0647G2511 Vigna mungo HOM05D000787 ORTHO05D001019 2.8e-06 54.7 52 40.4
arahy.Tifrunner.gnm1.ann1.4GF8V7 Arachis hypogaea HOM05D000787 ORTHO05D001019 3.7e-06 54.3 60 43.3
arahy.Tifrunner.gnm1.ann1.78SDCB Arachis hypogaea HOM05D000787 ORTHO05D001019 3.7e-06 54.3 49 44.9
arahy.Tifrunner.gnm1.ann1.WLAS15 Arachis hypogaea HOM05D000787 ORTHO05D001019 3.7e-06 54.3 50 44.0
arahy.Tifrunner.gnm1.ann1.YQLB0K Arachis hypogaea HOM05D000787 ORTHO05D001019 3.7e-06 54.3 49 44.9
Ciclev10015965m.g Citrus clementina HOM05D000787 ORTHO05D001019 3.7e-06 54.3 55 40.0
DCAR_030886 Daucus carota HOM05D000787 ORTHO05D001019 3.7e-06 54.3 55 41.8
ECA232G3318 Erigeron canadensis HOM05D000018 ORTHO05D001513 3.7e-06 54.3 53 43.4
Glyma.02G268000 Glycine max HOM05D000787 ORTHO05D001019 3.7e-06 54.3 50 42.0
Gohir.A06G152100 Gossypium hirsutum HOM05D000787 ORTHO05D001019 3.7e-06 54.3 50 44.0
Lsat_1_v5_gn_9_105960 Lactuca sativa HOM05D000787 ORTHO05D001019 3.7e-06 54.3 54 44.4
LjContig00029g0018500 Lotus japonicus HOM05D000787 ORTHO05D001019 3.7e-06 54.3 50 42.0
Lalb_Chr17g0347281 Lupinus albus HOM05D000787 ORTHO05D001019 3.7e-06 54.3 51 47.1
Nn5g28145 Nelumbo nucifera HOM05D000018 ORTHO05D001920 3.7e-06 54.3 50 46.0
Nitab4.5_0004694g0070 Nicotiana tabacum HOM05D000787 ORTHO05D001019 3.7e-06 54.3 58 37.9
Phvul.008G214200 Phaseolus vulgaris HOM05D000787 ORTHO05D001019 3.7e-06 54.3 50 42.0
Potri.011G020900 Populus trichocarpa HOM05D000787 ORTHO05D001019 3.7e-06 54.3 55 38.2
RcHm_v2.0_Chr2g0158011 Rosa chinensis HOM05D000787 ORTHO05D001019 3.7e-06 54.3 50 42.0
SMO329G0057 Selaginella moellendorffii HOM05D000018 ORTHO05D000453 3.7e-06 54.3 53 43.4
SMO358G0302 Selaginella moellendorffii HOM05D000118 ORTHO05D000187 3.7e-06 54.3 52 44.2
Solyc02g081190.4 Solanum lycopersicum HOM05D000787 ORTHO05D001019 3.7e-06 54.3 57 38.6
Thecc.08G120700 Theobroma cacao HOM05D000018 ORTHO05D001920 3.7e-06 54.3 50 46.0
TPR.G37011 Trifolium pratense HOM05D000787 ORTHO05D001019 3.7e-06 54.3 55 43.6
TWI18G0326 Tripterygium wilfordii HOM05D000787 ORTHO05D001019 3.7e-06 54.3 50 44.0
arahy.Tifrunner.gnm1.ann1.8A7NWS Arachis hypogaea HOM05D000787 ORTHO05D001019 4.8e-06 53.9 55 40.0
arahy.Tifrunner.gnm1.ann1.H8WHKS Arachis hypogaea HOM05D000787 ORTHO05D001019 4.8e-06 53.9 55 40.0
MSTRG.14622 Avicennia marina HOM05D000787 ORTHO05D001019 4.8e-06 53.9 59 42.4
CANSAT56G0763 Cannabis sativa HOM05D000787 ORTHO05D001019 4.8e-06 53.9 52 42.3
Carub.0006s0450 Capsella rubella HOM05D000018 ORTHO05D001513 4.8e-06 53.9 53 45.3
Thhalv10013937m.g Eutrema salsugineum HOM05D000118 ORTHO05D000872 4.8e-06 53.9 60 46.7
Hma1.2p1_0298F.1_g117390 Hydrangea macrophylla HOM05D000787 ORTHO05D001019 4.8e-06 53.9 55 41.8
Lj6g0012202 Lotus japonicus HOM05D000787 ORTHO05D001019 4.8e-06 53.9 52 40.4
MBI16_g31471_MAGBIO Magnolia biondii HOM05D000018 ORTHO05D001172 4.8e-06 53.9 50 46.0
MD09G1114800 Malus domestica HOM05D000787 ORTHO05D001019 4.8e-06 53.9 50 42.0
Medtr4g132770 Medicago truncatula HOM05D000787 ORTHO05D001019 4.8e-06 53.9 55 43.6
Psat2g025960 Pisum sativum HOM05D000787 ORTHO05D001019 4.8e-06 53.9 50 42.0
Potri.002G224100 Populus trichocarpa HOM05D000787 ORTHO05D001019 4.8e-06 53.9 50 42.0
Prupe.3G209900 Prunus persica HOM05D000787 ORTHO05D001019 4.8e-06 53.9 50 42.0
PGR042G0271 Punica granatum HOM05D000787 ORTHO05D001019 4.8e-06 53.9 54 40.7
QL03p008106 Quercus lobata HOM05D000787 ORTHO05D001019 4.8e-06 53.9 55 43.6
QL05p070154 Quercus lobata HOM05D000787 ORTHO05D001019 4.8e-06 53.9 55 43.6
SEGI_28768 Sequoiadendron giganteum HOM05D000018 ORTHO05D000187 4.8e-06 53.9 58 41.4
Solyc07g049550.3 Solanum lycopersicum HOM05D000787 ORTHO05D001019 4.8e-06 53.9 48 45.8
Sopen02g025830 Solanum pennellii HOM05D000787 ORTHO05D001019 4.8e-06 53.9 48 45.8
Thecc.06G229700 Theobroma cacao HOM05D000787 ORTHO05D001019 4.8e-06 53.9 55 40.0
HPP92_004739 Vanilla planifolia HOM05D000787 ORTHO05D001019 4.8e-06 53.9 58 37.9
arahy.Tifrunner.gnm1.ann1.22AMRS Arachis hypogaea HOM05D000787 ORTHO05D001019 6.3e-06 53.5 49 44.9
arahy.Tifrunner.gnm1.ann1.66YX65 Arachis hypogaea HOM05D000787 ORTHO05D001019 6.3e-06 53.5 49 42.9
arahy.Tifrunner.gnm1.ann1.NASX6J Arachis hypogaea HOM05D000787 ORTHO05D001019 6.3e-06 53.5 60 43.3
CAN.G283.5 Capsicum annuum HOM05D000787 ORTHO05D001019 6.3e-06 53.5 57 42.1
Duzib211G0359 Durio zibethinus HOM05D000787 ORTHO05D001019 6.3e-06 53.5 48 45.8
ECA234G4642 Erigeron canadensis HOM05D000787 ORTHO05D001019 6.3e-06 53.5 54 42.6
Migut.M01363 Erythranthe guttata HOM05D000787 ORTHO05D001019 6.3e-06 53.5 59 40.7
FAN02G0973 Fragaria x ananassa HOM05D000787 ORTHO05D001019 6.3e-06 53.5 50 42.0
FAN09G0375 Fragaria x ananassa HOM05D000787 ORTHO05D001019 6.3e-06 53.5 50 42.0
Glyma.14G049500 Glycine max HOM05D000787 ORTHO05D001019 6.3e-06 53.5 61 39.3
Lsat_1_v5_gn_5_123441 Lactuca sativa HOM05D000787 ORTHO05D001019 6.3e-06 53.5 58 41.4
LjContig00029g0027697 Lotus japonicus HOM05D000787 ORTHO05D001019 6.3e-06 53.5 50 42.0
Lalb_Chr15g0087841 Lupinus albus HOM05D000787 ORTHO05D001019 6.3e-06 53.5 52 40.4
Lalb_Chr20g0119141 Lupinus albus HOM05D000787 ORTHO05D001019 6.3e-06 53.5 52 40.4
SMO358G0547 Selaginella moellendorffii HOM05D000018 ORTHO05D000453 6.3e-06 53.5 53 41.5
Sopen07g024910 Solanum pennellii HOM05D000787 ORTHO05D001019 6.3e-06 53.5 48 45.8
GSVIVG01013255001 Vitis vinifera HOM05D000018 ORTHO05D000187 6.3e-06 53.5 49 46.9
Actinidia40272 Actinidia chinensis HOM05D000018 ORTHO05D000187 8.2e-06 53.1 50 44.0
Aqoxy1G04179 Aquilegia oxysepala HOM05D000787 ORTHO05D001019 8.2e-06 53.1 52 40.4
EL10Ac9g21806 Beta vulgaris HOM05D000018 ORTHO05D001172 8.2e-06 53.1 50 46.0
CsaV3_6G048630 Cucumis sativus L. HOM05D000787 ORTHO05D001019 8.2e-06 53.1 60 40.0
Dinv15981 Davidia involucrata HOM05D000018 ORTHO05D001333 8.2e-06 53.1 50 46.0
Dinv15985 Davidia involucrata HOM05D000018 ORTHO05D001333 8.2e-06 53.1 50 46.0
Dinv20115 Davidia involucrata HOM05D000787 ORTHO05D001019 8.2e-06 53.1 55 40.0
Glyma.07G264200 Glycine max HOM05D000787 ORTHO05D001019 8.2e-06 53.1 52 40.4
Glyma.17G009800 Glycine max HOM05D000787 ORTHO05D001019 8.2e-06 53.1 52 40.4
Gohir.A08G050300 Gossypium hirsutum HOM05D000787 ORTHO05D001019 8.2e-06 53.1 50 40.0
Gohir.D08G060200 Gossypium hirsutum HOM05D000787 ORTHO05D001019 8.2e-06 53.1 50 40.0
Gorai.004G062100 Gossypium raimondii HOM05D000787 ORTHO05D001019 8.2e-06 53.1 50 40.0
HanXRQChr10g0306121 Helianthus annuus HOM05D000787 ORTHO05D001019 8.2e-06 53.1 55 40.0
Hma1.2p1_0584F.1_g183180 Hydrangea macrophylla HOM05D000018 ORTHO05D001172 8.2e-06 53.1 50 46.0
Lj2A151T45 Lonicera japonica HOM05D000018 ORTHO05D000453 8.2e-06 53.1 57 38.6
Lj2A151T48 Lonicera japonica HOM05D000018 ORTHO05D000453 8.2e-06 53.1 57 38.6
Lj6g0023137 Lotus japonicus HOM05D000118 ORTHO05D000872 8.2e-06 53.1 46 47.8
PSO210G2481 Papaver somniferum HOM05D000787 ORTHO05D001019 8.2e-06 53.1 52 42.3
PSO832G3873 Papaver somniferum HOM05D000787 ORTHO05D001019 8.2e-06 53.1 52 42.3
Peaxi162Scf01096g00025 Petunia axillaris HOM05D000787 ORTHO05D001019 8.2e-06 53.1 48 43.8
Prupe.4G013800 Prunus persica HOM05D000787 ORTHO05D001019 8.2e-06 53.1 53 39.6
SMO358G0109 Selaginella moellendorffii HOM05D000018 ORTHO05D001513 8.2e-06 53.1 48 43.8
SEGI_31114 Sequoiadendron giganteum HOM05D000018 ORTHO05D000872 8.2e-06 53.1 48 41.7
TWI36G0508 Tripterygium wilfordii HOM05D000787 ORTHO05D001019 8.2e-06 53.1 50 42.0
GSVIVG01013257001 Vitis vinifera HOM05D000018 ORTHO05D000187 8.2e-06 53.1 49 46.9


User provided reference genes

Program Settings