Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO229G0001 Selaginella moellendorffii HOM05D004745 ORTHO05D005626 2.6e-83 312.0 158 100.0
Phvul.010G154200 Phaseolus vulgaris HOM05D004745 ORTHO05D005626 2.5e-33 146.0 151 52.3
Cfa001995 Carpinus fangiana HOM05D004745 ORTHO05D005626 3.3e-33 145.6 117 59.8
CANSAT56G2452 Cannabis sativa HOM05D004745 ORTHO05D005626 2.8e-32 142.5 117 59.8
TWI12G1169 Tripterygium wilfordii HOM05D004745 ORTHO05D005626 2.8e-32 142.5 117 59.8
TAR636G0831 Trochodendron aralioides HOM05D004745 ORTHO05D005626 2.8e-32 142.5 120 59.2
Actinidia15789 Actinidia chinensis HOM05D004745 ORTHO05D005626 4.7e-32 141.7 108 63.9
GSVIVG01017280001 Vitis vinifera HOM05D004745 ORTHO05D005626 4.7e-32 141.7 120 60.8
CiPaw.01G245300 Carya illinoinensis HOM05D004745 ORTHO05D005626 8.0e-32 141.0 117 59.0
Ciclev10026288m.g Citrus clementina HOM05D004745 ORTHO05D005626 8.0e-32 141.0 117 60.7
Haze_16523 Corylus avellana HOM05D004745 ORTHO05D005626 8.0e-32 141.0 117 59.0
Nn8g39406 Nelumbo nucifera HOM05D004745 ORTHO05D005626 1.0e-31 140.6 119 57.1
Glyma.08G210900 Glycine max HOM05D004745 ORTHO05D005626 1.4e-31 140.2 152 55.3
Gorai.011G081700 Gossypium raimondii HOM05D004745 ORTHO05D005626 1.4e-31 140.2 117 59.0
Lalb_Chr14g0373711 Lupinus albus HOM05D004745 ORTHO05D005626 1.4e-31 140.2 117 61.5
Aqoxy7G02119 Aquilegia oxysepala HOM05D004745 ORTHO05D005626 1.8e-31 139.8 115 60.9
CSS0020299 Camellia sinensis var. sinensis HOM05D004745 ORTHO05D005626 1.8e-31 139.8 117 59.0
CBR_g8594 Chara braunii HOM05D004745 ORTHO05D005626 1.8e-31 139.8 121 58.7
AUR62016368 Chenopodium quinoa HOM05D004745 ORTHO05D005626 1.8e-31 139.8 117 58.1
COL.COLO4_12918 Corchorus olitorius HOM05D004745 ORTHO05D005626 1.8e-31 139.8 117 59.8
Carub.0001s1517 Capsella rubella HOM05D004745 ORTHO05D005626 2.3e-31 139.4 115 60.0
Sed0026286 Sechium edule HOM05D004745 ORTHO05D005626 2.3e-31 139.4 115 60.0
THA.LOC104808227 Tarenaya hassleriana HOM05D004745 ORTHO05D005626 2.3e-31 139.4 117 58.1
Thecc.06G070400 Theobroma cacao HOM05D004745 ORTHO05D005626 2.3e-31 139.4 117 59.0
unitig_747.g21294 Utricularia gibba HOM05D004745 ORTHO05D005626 2.3e-31 139.4 115 59.1
Gohir.A10G075700 Gossypium hirsutum HOM05D004745 ORTHO05D005626 4.0e-31 138.7 117 58.1
Gohir.D10G075900 Gossypium hirsutum HOM05D004745 ORTHO05D005626 4.0e-31 138.7 117 58.1
Manes.11G053800 Manihot esculenta HOM05D004745 ORTHO05D005626 4.0e-31 138.7 117 57.3
Potri.001G171800 Populus trichocarpa HOM05D004745 ORTHO05D005626 4.0e-31 138.7 117 58.1
Rhsim08G0215400 Rhododendron simsii HOM05D004745 ORTHO05D005626 4.0e-31 138.7 108 60.2
Sabra01G0139800 Salix brachista HOM05D004745 ORTHO05D005626 4.0e-31 138.7 108 61.1
DCAR_025491 Daucus carota HOM05D004745 ORTHO05D005626 5.2e-31 138.3 118 57.6
Migut.I00794 Erythranthe guttata HOM05D004745 ORTHO05D005626 5.2e-31 138.3 115 58.3
EL10Ac9g21930 Beta vulgaris HOM05D004745 ORTHO05D005626 6.8e-31 137.9 117 58.1
Ca_01071_v3 Cicer arietinum L. HOM05D004745 ORTHO05D005626 6.8e-31 137.9 107 64.5
ClCG07G012760 Citrullus lanatus HOM05D004745 ORTHO05D005626 6.8e-31 137.9 117 59.0
Peaxi162Scf00320g00620 Petunia axillaris HOM05D004745 ORTHO05D005626 6.8e-31 137.9 117 58.1
Psat5g301200 Pisum sativum HOM05D004745 ORTHO05D005626 6.8e-31 137.9 135 52.6
VMungo0331G1340 Vigna mungo HOM05D004745 ORTHO05D005626 6.8e-31 137.9 149 52.3
CARHR015930 Cardamine hirsuta HOM05D004745 ORTHO05D005626 8.9e-31 137.5 122 56.6
PGR102G0579 Punica granatum HOM05D004745 ORTHO05D005626 8.9e-31 137.5 117 59.0
FAN09G2173 Fragaria x ananassa HOM05D004745 ORTHO05D005626 1.2e-30 137.1 108 62.0
Prupe.3G081800 Prunus persica HOM05D004745 ORTHO05D005626 1.2e-30 137.1 118 56.8
QL05p028225 Quercus lobata HOM05D004745 ORTHO05D005626 1.2e-30 137.1 117 57.3
HPP92_024132 Vanilla planifolia HOM05D004745 ORTHO05D005626 1.2e-30 137.1 134 56.0
AUR62011549 Chenopodium quinoa HOM05D004745 ORTHO05D005626 1.5e-30 136.7 108 59.3
Cc04_g04150 Coffea canephora HOM05D004745 ORTHO05D005626 1.5e-30 136.7 108 61.1
Eucgr.F02539 Eucalyptus grandis HOM05D004745 ORTHO05D005626 2.0e-30 136.3 115 59.1
RcHm_v2.0_Chr2g0136431 Rosa chinensis HOM05D004745 ORTHO05D005626 2.0e-30 136.3 116 59.5
Hund06573 Selenicereus undatus HOM05D004745 ORTHO05D005626 2.0e-30 136.3 108 60.2
vmacro18973 Vaccinium macrocarpon HOM05D004745 ORTHO05D005626 2.0e-30 136.3 108 60.2
Aa31LG7G150 Aethionema arabicum HOM05D004745 ORTHO05D005626 2.6e-30 136.0 115 58.3
AL1G27500 Arabidopsis lyrata HOM05D004745 ORTHO05D005626 2.6e-30 136.0 115 58.3
BolC5t30092H Brassica oleracea HOM05D004745 ORTHO05D005626 2.6e-30 136.0 119 57.1
BraA06t24321Z Brassica rapa HOM05D004745 ORTHO05D005626 2.6e-30 136.0 119 57.1
Thhalv10008467m.g Eutrema salsugineum HOM05D004745 ORTHO05D005626 2.6e-30 136.0 115 56.5
FAN02G3524 Fragaria x ananassa HOM05D004745 ORTHO05D005626 2.6e-30 136.0 118 59.3
Nitab4.5_0000413g0130 Nicotiana tabacum HOM05D004745 ORTHO05D005626 2.6e-30 136.0 117 57.3
Oeu000434.1 Olea europaea HOM05D004745 ORTHO05D005626 2.6e-30 136.0 108 59.3
PGSC0003DMG400029962 Solanum tuberosum HOM05D004745 ORTHO05D005626 2.6e-30 136.0 117 57.3
MBI04_g07638_MAGBIO Magnolia biondii HOM05D004745 ORTHO05D005626 3.4e-30 135.6 118 57.6
Medtr2g103430 Medicago truncatula HOM05D004745 ORTHO05D005626 3.4e-30 135.6 107 60.7
A06p11430 Brassica napus HOM05D004745 ORTHO05D005626 4.4e-30 135.2 118 56.8
Sp1g13740 Schrenkiella parvula HOM05D004745 ORTHO05D005626 4.4e-30 135.2 122 55.7
Solyc07g015860.3 Solanum lycopersicum HOM05D004745 ORTHO05D005626 4.4e-30 135.2 117 56.4
AT1G15390 Arabidopsis thaliana HOM05D004745 ORTHO05D005626 5.7e-30 134.8 115 57.4
CsaV3_4G001440 Cucumis sativus L. HOM05D004745 ORTHO05D005626 7.5e-30 134.4 117 59.0
FvH4_6g30190 Fragaria vesca HOM05D004745 ORTHO05D005626 7.5e-30 134.4 118 58.5
FAN14G5774 Fragaria x ananassa HOM05D004745 ORTHO05D005626 7.5e-30 134.4 118 58.5
Nitab4.5_0009683g0020 Nicotiana tabacum HOM05D004745 ORTHO05D005626 7.5e-30 134.4 117 56.4
A09p61430 Brassica napus HOM05D004745 ORTHO05D005626 9.8e-30 134.0 115 56.5
C05p13550 Brassica napus HOM05D004745 ORTHO05D005626 9.8e-30 134.0 119 56.3
C08p44990 Brassica napus HOM05D004745 ORTHO05D005626 9.8e-30 134.0 115 56.5
BraA09t41514Z Brassica rapa HOM05D004745 ORTHO05D005626 9.8e-30 134.0 115 56.5
Duzib235G0601 Durio zibethinus HOM05D004745 ORTHO05D005626 9.8e-30 134.0 117 57.3
TPR.G38663 Trifolium pratense HOM05D004745 ORTHO05D005626 9.8e-30 134.0 156 49.4
BcaC05g25486 Brassica carinata HOM05D004745 ORTHO05D005626 1.3e-29 133.7 119 55.5
Atru.chr1.3054 Acer truncatum HOM05D004745 ORTHO05D005626 1.7e-29 133.3 117 58.1
BcaC07g41503 Brassica carinata HOM05D004745 ORTHO05D005626 1.7e-29 133.3 115 56.5
CAN.G1158.5 Capsicum annuum HOM05D004745 ORTHO05D005626 1.7e-29 133.3 117 56.4
Ca_29515_v3 Cicer arietinum L. HOM05D004745 ORTHO05D005626 1.7e-29 133.3 115 57.4
Lj3g0003662 Lotus japonicus HOM05D004745 ORTHO05D005626 1.7e-29 133.3 115 60.0
BcaC05g25480 Brassica carinata HOM05D004745 ORTHO05D005626 2.2e-29 132.9 118 56.8
BolC8t52045H Brassica oleracea HOM05D004745 ORTHO05D005626 2.2e-29 132.9 115 55.7
ECA238G2546 Erigeron canadensis HOM05D004745 ORTHO05D005626 2.2e-29 132.9 108 60.2
Psat7g255920 Pisum sativum HOM05D004745 ORTHO05D005626 2.2e-29 132.9 108 60.2
Sc06g0004020 Simmondsia chinensis HOM05D004745 ORTHO05D005626 2.2e-29 132.9 165 48.5
arahy.Tifrunner.gnm1.ann1.EYL5YU Arachis hypogaea HOM05D004745 ORTHO05D005626 2.9e-29 132.5 108 61.1
BcaB03g14542 Brassica carinata HOM05D004745 ORTHO05D005626 2.9e-29 132.5 115 56.5
Ca_20430_v3 Cicer arietinum L. HOM05D004745 ORTHO05D005626 2.9e-29 132.5 108 59.3
Lalb_Chr01g0012481 Lupinus albus HOM05D004745 ORTHO05D005626 4.9e-29 131.7 108 59.3
Os01g0555800 Oryza sativa ssp. japonica HOM05D004745 ORTHO05D005626 4.9e-29 131.7 106 60.4
Pp3c2_27110 Physcomitrium patens HOM05D004745 ORTHO05D005626 4.9e-29 131.7 122 57.4
arahy.Tifrunner.gnm1.ann1.Q3QYYY Arachis hypogaea HOM05D004745 ORTHO05D005626 6.4e-29 131.3 108 60.2
Lsat_1_v5_gn_5_132160 Lactuca sativa HOM05D004745 ORTHO05D005626 6.4e-29 131.3 108 59.3
Peaxi162Scf00320g00617 Petunia axillaris HOM05D004745 ORTHO05D005626 6.4e-29 131.3 115 56.5
Lj9A502G38 Lonicera japonica HOM05D004745 ORTHO05D005626 8.3e-29 131.0 123 53.7
Pp3c1_9250 Physcomitrium patens HOM05D004745 ORTHO05D005626 8.3e-29 131.0 116 58.6
ATR1156G012 Amborella trichopoda HOM05D004745 ORTHO05D005626 1.1e-28 130.6 108 57.4
MSTRG.22729 Avicennia marina HOM05D004745 ORTHO05D005626 1.4e-28 130.2 118 54.2
HanXRQChr10g0303121 Helianthus annuus HOM05D004745 ORTHO05D005626 1.4e-28 130.2 118 57.6
VMungo1080G0321 Vigna mungo HOM05D004745 ORTHO05D005626 1.8e-28 129.8 119 57.1
HanXRQChr16g0500481 Helianthus annuus HOM05D004745 ORTHO05D005626 2.4e-28 129.4 119 55.5
ECA246G2906 Erigeron canadensis HOM05D004745 ORTHO05D005626 3.2e-28 129.0 120 55.8
Medtr4g011040 Medicago truncatula HOM05D004745 ORTHO05D005626 3.2e-28 129.0 115 58.3
PSO170G2068 Papaver somniferum HOM05D004745 ORTHO05D005626 3.2e-28 129.0 108 58.3
PSO455G0289 Papaver somniferum HOM05D004745 ORTHO05D005626 3.2e-28 129.0 108 58.3
Hma1.2p1_0394F.1_g143470 Hydrangea macrophylla HOM05D004745 ORTHO05D005626 4.1e-28 128.6 115 54.8
SGA_v2.0_scaffold5G02669 Striga asiatica HOM05D004745 ORTHO05D005626 4.1e-28 128.6 108 58.3
ECA238G0294 Erigeron canadensis HOM05D004745 ORTHO05D005626 5.4e-28 128.3 118 55.1
ECA234G2450 Erigeron canadensis HOM05D004745 ORTHO05D005626 7.0e-28 127.9 118 55.1
ECA238G4104 Erigeron canadensis HOM05D004745 ORTHO05D005626 7.0e-28 127.9 118 55.1
Lsat_1_v5_gn_4_105820 Lactuca sativa HOM05D004745 ORTHO05D005626 7.0e-28 127.9 107 56.1
ECA240G0712 Erigeron canadensis HOM05D004745 ORTHO05D005626 9.2e-28 127.5 107 57.0
ECA232G3489 Erigeron canadensis HOM05D004745 ORTHO05D005626 5.9e-27 124.8 118 53.4
Glyma.15G009700 Glycine max HOM05D004745 ORTHO05D005626 1.0e-26 124.0 108 56.5
TPR.G37193 Trifolium pratense HOM05D004745 ORTHO05D005626 1.0e-26 124.0 107 56.1
SalBow2G2198 Salvia bowleyana HOM05D004745 ORTHO05D005626 1.3e-26 123.6 127 51.2
ECA233G1751 Erigeron canadensis HOM05D004745 ORTHO05D005626 3.9e-26 122.1 118 53.4
ECA234G1027 Erigeron canadensis HOM05D004745 ORTHO05D005626 3.9e-26 122.1 118 52.5
Phvul.005G175900 Phaseolus vulgaris HOM05D004745 ORTHO05D005626 3.9e-26 122.1 113 55.8
Sopen07g005700 Solanum pennellii HOM05D004745 ORTHO05D005626 6.6e-26 121.3 144 45.8
Mapoly0061s0037 Marchantia polymorpha HOM05D004745 ORTHO05D005626 1.5e-25 120.2 115 54.8
Mapoly0285s0003 Marchantia polymorpha HOM05D004745 ORTHO05D005626 1.5e-25 120.2 115 54.8
Lj3g0018837 Lotus japonicus HOM05D004745 ORTHO05D005626 1.6e-24 116.7 121 51.2
Medtr2g103420 Medicago truncatula HOM05D004745 ORTHO05D005626 6.2e-24 114.8 119 52.1
MD17G1207300 Malus domestica HOM05D004745 ORTHO05D005626 5.2e-23 111.7 155 41.3
MCO13G487 Micromonas commoda HOM05D004745 ORTHO05D005626 7.5e-22 107.8 108 51.9
Zm00001eb329240 Zea mays HOM05D004745 ORTHO05D005626 9.8e-22 107.5 92 58.7
Actinidia01762 Actinidia chinensis HOM05D004745 ORTHO05D005626 1.1e-20 104.0 75 64.0
Cpa.g.sc10.231 Carica papaya HOM05D004745 ORTHO05D005626 1.1e-20 104.0 75 65.3
arahy.Tifrunner.gnm1.ann1.1TA14L Arachis hypogaea HOM05D004745 ORTHO05D005626 3.2e-20 102.4 95 55.8
arahy.Tifrunner.gnm1.ann1.8B3Q96 Arachis hypogaea HOM05D004745 ORTHO05D005626 3.2e-20 102.4 95 55.8
MD13G1166000 Malus domestica HOM05D004745 ORTHO05D005626 7.0e-20 101.3 172 34.9
arahy.Tifrunner.gnm1.ann1.9IE0L2 Arachis hypogaea HOM05D004745 ORTHO05D005626 1.1e-17 94.0 88 52.3
arahy.Tifrunner.gnm1.ann1.W67IMC Arachis hypogaea HOM05D004745 ORTHO05D005626 1.1e-17 94.0 88 52.3
TWI18G0786 Tripterygium wilfordii HOM05D004745 ORTHO05D005626 3.3e-17 92.4 116 44.8
Cre03.g172100 Chlamydomonas reinhardtii HOM05D004745 ORTHO05D005626 1.1e-15 87.4 113 41.6
MELO3C017896.2 Cucumis melo HOM05D004745 ORTHO05D005626 5.8e-14 81.6 107 43.9
CSS0024051 Camellia sinensis var. sinensis HOM05D004745 ORTHO05D005626 2.2e-13 79.7 62 61.3
Lj9C59T9 Lonicera japonica HOM05D004745 ORTHO05D005626 4.6e-11 72.0 64 51.6
RcHm_v2.0_Chr2g0163901 Rosa chinensis HOM05D004745 ORTHO05D005626 4.6e-11 72.0 54 64.8
Lj9A53G21 Lonicera japonica HOM05D004745 ORTHO05D005626 2.3e-10 69.7 64 51.6
MD17G1207400 Malus domestica HOM05D004745 ORTHO05D005626 2.3e-10 69.7 57 54.4
CDE04G3151 Ceratophyllum demersum HOM05D004745 ORTHO05D005626 3.9e-10 68.9 70 55.7
Dinv30579 Davidia involucrata HOM05D004745 ORTHO05D005626 3.9e-10 68.9 94 41.5
MD13G1165900 Malus domestica HOM05D004745 ORTHO05D005626 3.9e-10 68.9 103 39.8
ECA248G1182 Erigeron canadensis HOM05D004745 ORTHO05D005626 1.8e-07 60.1 53 50.9
Aqoxy7G02118 Aquilegia oxysepala HOM05D004745 ORTHO05D005626 7.6e-06 54.7 66 43.9
Sabra16G0226300 Salix brachista HOM05D006109 ORTHO05D007647 7.6e-06 54.7 141 26.2
CANSAT64G2896 Cannabis sativa HOM05D006109 ORTHO05D007647 9.9e-06 54.3 144 25.7


User provided reference genes

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