Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO228G0084 Selaginella moellendorffii HOM05D005689 ORTHO05D007060 3.3e-77 291.6 141 100.0
Mapoly0010s0009 Marchantia polymorpha HOM05D005689 ORTHO05D007060 5.4e-56 221.1 138 68.8
Gohir.A03G205500 Gossypium hirsutum HOM05D005689 ORTHO05D007060 5.6e-53 211.1 138 65.9
Gohir.D02G226800 Gossypium hirsutum HOM05D005689 ORTHO05D007060 5.6e-53 211.1 138 65.9
Gorai.005G254700 Gossypium raimondii HOM05D005689 ORTHO05D007060 5.6e-53 211.1 138 65.9
VMungo1383G2472 Vigna mungo HOM05D005689 ORTHO05D007060 7.4e-53 210.7 138 66.7
Aqoxy6G02106 Aquilegia oxysepala HOM05D005689 ORTHO05D007060 9.6e-53 210.3 138 65.2
MSTRG.19983 Avicennia marina HOM05D005689 ORTHO05D007060 9.6e-53 210.3 138 65.2
QL11p051049 Quercus lobata HOM05D005689 ORTHO05D007060 1.3e-52 209.9 138 65.2
SEGI_29883 Sequoiadendron giganteum HOM05D005689 ORTHO05D007060 1.3e-52 209.9 138 65.9
Duzib132G1056 Durio zibethinus HOM05D005689 ORTHO05D007060 1.6e-52 209.5 138 65.2
Glyma.18G247400 Glycine max HOM05D005689 ORTHO05D007060 2.1e-52 209.1 138 65.9
Thecc.02G057800 Theobroma cacao HOM05D005689 ORTHO05D007060 2.1e-52 209.1 138 65.2
Atru.chr5.3380 Acer truncatum HOM05D005689 ORTHO05D007060 2.8e-52 208.8 138 65.2
Ciclev10029529m.g Citrus clementina HOM05D005689 ORTHO05D007060 2.8e-52 208.8 138 65.9
Cc09_g09830 Coffea canephora HOM05D005689 ORTHO05D007060 2.8e-52 208.8 138 64.5
Migut.B00070 Erythranthe guttata HOM05D005689 ORTHO05D007060 2.8e-52 208.8 138 63.8
Phvul.008G049900 Phaseolus vulgaris HOM05D005689 ORTHO05D007060 2.8e-52 208.8 138 65.9
MD05G1123300 Malus domestica HOM05D005689 ORTHO05D007060 3.6e-52 208.4 138 65.2
Medtr7g081040 Medicago truncatula HOM05D005689 ORTHO05D007060 3.6e-52 208.4 138 65.2
Cfa005260 Carpinus fangiana HOM05D005689 ORTHO05D007060 4.8e-52 208.0 138 64.5
Ca_08042_v3 Cicer arietinum L. HOM05D005689 ORTHO05D007060 4.8e-52 208.0 138 65.2
ClCG02G003990 Citrullus lanatus HOM05D005689 ORTHO05D007060 4.8e-52 208.0 138 64.5
MELO3C013345.2 Cucumis melo HOM05D005689 ORTHO05D007060 4.8e-52 208.0 138 64.5
CsaV3_7G001110 Cucumis sativus L. HOM05D005689 ORTHO05D007060 4.8e-52 208.0 138 64.5
Glyma.09G245600 Glycine max HOM05D005689 ORTHO05D007060 4.8e-52 208.0 138 65.2
Pp3c13_19460 Physcomitrium patens HOM05D005689 ORTHO05D007060 4.8e-52 208.0 138 65.2
Prupe.8G167200 Prunus persica HOM05D005689 ORTHO05D007060 4.8e-52 208.0 138 65.2
Sed0024195 Sechium edule HOM05D005689 ORTHO05D007060 4.8e-52 208.0 138 64.5
TPR.G32114 Trifolium pratense HOM05D005689 ORTHO05D007060 4.8e-52 208.0 138 65.2
TWI31G0315 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 4.8e-52 208.0 138 65.2
GSVIVG01024004001 Vitis vinifera HOM05D005689 ORTHO05D007060 4.8e-52 208.0 138 64.5
Eucgr.I01435 Eucalyptus grandis HOM05D005689 ORTHO05D007060 6.2e-52 207.6 138 64.5
Lj1g0014054 Lotus japonicus HOM05D005689 ORTHO05D007060 6.2e-52 207.6 138 65.2
Zm00001eb331790 Zea mays HOM05D005689 ORTHO05D007060 6.2e-52 207.6 138 66.7
CANSAT25G1424 Cannabis sativa HOM05D005689 ORTHO05D007060 8.1e-52 207.2 138 64.5
Dinv41928 Davidia involucrata HOM05D005689 ORTHO05D007060 8.1e-52 207.2 138 63.8
Hma1.2p1_0032F.1_g019300 Hydrangea macrophylla HOM05D005689 ORTHO05D007060 8.1e-52 207.2 138 64.5
MD10G1126300 Malus domestica HOM05D005689 ORTHO05D007060 8.1e-52 207.2 138 65.2
Potri.009G136800 Populus trichocarpa HOM05D005689 ORTHO05D007060 8.1e-52 207.2 138 64.5
Duzib248G0128 Durio zibethinus HOM05D005689 ORTHO05D007060 1.1e-51 206.8 138 64.5
MBI12_g17551_MAGBIO Magnolia biondii HOM05D005689 ORTHO05D007060 1.1e-51 206.8 138 64.5
PGR142G2796 Punica granatum HOM05D005689 ORTHO05D007060 1.1e-51 206.8 138 63.8
Cpa.g.sc20.100 Carica papaya HOM05D005689 ORTHO05D007060 1.4e-51 206.5 137 65.7
AUR62010026 Chenopodium quinoa HOM05D005689 ORTHO05D007060 1.4e-51 206.5 138 64.5
AUR62013016 Chenopodium quinoa HOM05D005689 ORTHO05D007060 1.4e-51 206.5 138 64.5
FAN27G1498 Fragaria x ananassa HOM05D005689 ORTHO05D007060 1.4e-51 206.5 138 63.8
vmacro02282 Vaccinium macrocarpon HOM05D005689 ORTHO05D007060 1.4e-51 206.5 138 64.5
CSS0016500 Camellia sinensis var. sinensis HOM05D005689 ORTHO05D007060 1.8e-51 206.1 138 63.8
Lalb_Chr21g0306961 Lupinus albus HOM05D005689 ORTHO05D007060 1.8e-51 206.1 138 63.8
Hund06443 Selenicereus undatus HOM05D005689 ORTHO05D007060 1.8e-51 206.1 138 63.8
unitig_0.g36 Utricularia gibba HOM05D005689 ORTHO05D007060 1.8e-51 206.1 138 63.0
CiPaw.05G083600 Carya illinoinensis HOM05D005689 ORTHO05D007060 2.4e-51 205.7 138 63.0
Manes.04G071800 Manihot esculenta HOM05D005689 ORTHO05D007060 2.4e-51 205.7 138 63.0
PSO675G8512 Papaver somniferum HOM05D005689 ORTHO05D007060 2.4e-51 205.7 138 64.5
RcHm_v2.0_Chr6g0278501 Rosa chinensis HOM05D005689 ORTHO05D007060 2.4e-51 205.7 138 63.8
Actinidia20518 Actinidia chinensis HOM05D005689 ORTHO05D007060 3.1e-51 205.3 138 63.8
CDE02G0259 Ceratophyllum demersum HOM05D005689 ORTHO05D007060 3.1e-51 205.3 140 63.6
FAN24G0830 Fragaria x ananassa HOM05D005689 ORTHO05D007060 3.1e-51 205.3 138 63.0
Peaxi162Scf00362g00537 Petunia axillaris HOM05D005689 ORTHO05D007060 3.1e-51 205.3 138 63.8
TAR376G1105 Trochodendron aralioides HOM05D005689 ORTHO05D007060 3.1e-51 205.3 138 64.5
CAN.G588.89 Capsicum annuum HOM05D005689 ORTHO05D007060 4.0e-51 204.9 138 63.8
FvH4_2g15500 Fragaria vesca HOM05D005689 ORTHO05D007060 4.0e-51 204.9 138 63.0
FAN15G3340 Fragaria x ananassa HOM05D005689 ORTHO05D007060 4.0e-51 204.9 138 63.0
Os09g0541500 Oryza sativa ssp. japonica HOM05D005689 ORTHO05D007060 4.0e-51 204.9 138 65.2
PSO541G0653 Papaver somniferum HOM05D005689 ORTHO05D007060 4.0e-51 204.9 138 64.5
Sc18g0006380 Simmondsia chinensis HOM05D005689 ORTHO05D007060 4.0e-51 204.9 138 63.0
PGSC0003DMG400006181 Solanum tuberosum HOM05D005689 ORTHO05D007060 6.9e-51 204.1 138 63.0
TWI75G0361 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 6.9e-51 204.1 138 64.5
CiPaw.06G120900 Carya illinoinensis HOM05D005689 ORTHO05D007060 1.2e-50 203.4 138 63.8
DCAR_030423 Daucus carota HOM05D005689 ORTHO05D007060 1.2e-50 203.4 138 63.0
Nitab4.5_0003698g0100 Nicotiana tabacum HOM05D005689 ORTHO05D007060 1.2e-50 203.4 138 63.0
Solyc01g111690.3 Solanum lycopersicum HOM05D005689 ORTHO05D007060 1.2e-50 203.4 138 63.0
Sopen01g053730 Solanum pennellii HOM05D005689 ORTHO05D007060 1.2e-50 203.4 138 63.0
FAN20G0310 Fragaria x ananassa HOM05D005689 ORTHO05D007060 2.0e-50 202.6 138 62.3
Actinidia00628 Actinidia chinensis HOM05D005689 ORTHO05D007060 3.4e-50 201.8 138 62.3
EL10Ac9g21356 Beta vulgaris HOM05D005689 ORTHO05D007060 3.4e-50 201.8 138 62.3
Carub.0004s0002 Capsella rubella HOM05D005689 ORTHO05D007060 4.5e-50 201.4 138 62.3
CARHR174210 Cardamine hirsuta HOM05D005689 ORTHO05D007060 5.8e-50 201.1 138 62.3
Lsat_1_v5_gn_8_123161 Lactuca sativa HOM05D005689 ORTHO05D007060 5.8e-50 201.1 136 62.5
THA.LOC104824758 Tarenaya hassleriana HOM05D005689 ORTHO05D007060 7.6e-50 200.7 137 62.8
AT2G20930 Arabidopsis thaliana HOM05D005689 ORTHO05D007060 9.9e-50 200.3 138 61.6
ECA233G5373 Erigeron canadensis HOM05D005689 ORTHO05D007060 9.9e-50 200.3 136 62.5
AL4G10060 Arabidopsis lyrata HOM05D005689 ORTHO05D007060 1.3e-49 199.9 138 61.6
DCAR_003179 Daucus carota HOM05D005689 ORTHO05D007060 1.7e-49 199.5 138 61.6
Thhalv10026520m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 1.7e-49 199.5 137 62.0
HanXRQChr03g0080211 Helianthus annuus HOM05D005689 ORTHO05D007060 1.7e-49 199.5 136 62.5
C07p63680 Brassica napus HOM05D005689 ORTHO05D007060 2.9e-49 198.7 137 62.0
BolC7t46781H Brassica oleracea HOM05D005689 ORTHO05D007060 2.9e-49 198.7 137 62.0
SalBow1G8746 Salvia bowleyana HOM05D005689 ORTHO05D007060 2.9e-49 198.7 137 62.0
Sp4g00120 Schrenkiella parvula HOM05D005689 ORTHO05D007060 2.9e-49 198.7 138 60.9
BcaB08g34950 Brassica carinata HOM05D005689 ORTHO05D007060 4.9e-49 198.0 138 60.1
BcaC07g41181 Brassica carinata HOM05D005689 ORTHO05D007060 4.9e-49 198.0 138 60.1
BcaNung01978 Brassica carinata HOM05D005689 ORTHO05D007060 4.9e-49 198.0 137 62.0
HPP92_012947 Vanilla planifolia HOM05D005689 ORTHO05D007060 6.4e-49 197.6 138 62.3
A06p48990 Brassica napus HOM05D005689 ORTHO05D007060 8.4e-49 197.2 137 61.3
BraA06t27765Z Brassica rapa HOM05D005689 ORTHO05D007060 8.4e-49 197.2 137 61.3
Pp3c12_10830 Physcomitrium patens HOM05D005689 ORTHO05D007060 1.1e-48 196.8 138 61.6
Thhalv10000369m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 1.9e-48 196.1 138 60.9
Aa31LG6G16620 Aethionema arabicum HOM05D005689 ORTHO05D007060 2.4e-48 195.7 137 60.6
Psat3g100360 Pisum sativum HOM05D005689 ORTHO05D007060 7.1e-48 194.1 130 63.8
CBR_g33926 Chara braunii HOM05D000604 ORTHO05D004856 9.3e-48 193.7 133 64.7
Nitab4.5_0000283g0450 Nicotiana tabacum HOM05D005689 ORTHO05D007060 2.1e-47 192.6 148 58.1
SalBow5G2226 Salvia bowleyana HOM05D005689 ORTHO05D007060 6.0e-47 191.0 161 53.4
Oeu019918.2 Olea europaea HOM05D005689 ORTHO05D007060 1.0e-46 190.3 164 53.0
A09p58620 Brassica napus HOM05D005689 ORTHO05D007060 2.3e-46 189.1 138 59.4
C08p41910 Brassica napus HOM05D005689 ORTHO05D007060 2.3e-46 189.1 138 59.4
BolC8t51754H Brassica oleracea HOM05D005689 ORTHO05D007060 2.3e-46 189.1 138 59.4
BraA09t41249Z Brassica rapa HOM05D005689 ORTHO05D007060 2.3e-46 189.1 138 59.4
Sp7g37220 Schrenkiella parvula HOM05D005689 ORTHO05D007060 3.0e-46 188.7 137 59.9
ATR0315G041 Amborella trichopoda HOM05D005689 ORTHO05D007060 3.9e-46 188.3 129 62.8
Aa31LG7G15690 Aethionema arabicum HOM05D005689 ORTHO05D007060 2.5e-45 185.7 166 50.6
BcaC07g41184 Brassica carinata HOM05D005689 ORTHO05D007060 2.8e-44 182.2 138 58.0
arahy.Tifrunner.gnm1.ann1.9U6RFS Arachis hypogaea HOM05D005689 ORTHO05D007060 1.8e-43 179.5 199 45.2
Sabra09G0106300 Salix brachista HOM05D005689 ORTHO05D007060 1.8e-43 179.5 202 44.6
Sed0010745 Sechium edule HOM05D005689 ORTHO05D007060 9.0e-43 177.2 138 57.2
SalBow5G0288 Salvia bowleyana HOM05D005689 ORTHO05D007060 2.6e-42 175.6 152 52.0
HPP92_007243 Vanilla planifolia HOM05D005689 ORTHO05D007060 6.0e-39 164.5 119 60.5
CARHR111830 Cardamine hirsuta HOM05D005689 ORTHO05D007060 1.1e-37 160.2 112 59.8
SGA_v2.0_scaffold80G25838 Striga asiatica HOM05D005689 ORTHO05D007060 9.0e-35 150.6 160 45.0
Nitab4.5_0000079g0270 Nicotiana tabacum HOM05D005689 ORTHO05D007060 3.8e-33 145.2 100 60.0
Nn6g31939 Nelumbo nucifera HOM05D005689 ORTHO05D007060 8.5e-33 144.1 96 62.5
arahy.Tifrunner.gnm1.ann1.B1HGXN Arachis hypogaea HOM05D005689 ORTHO05D007060 1.1e-32 143.7 99 62.6
Cre03.g165650 Chlamydomonas reinhardtii HOM05D005689 ORTHO05D007060 5.1e-30 134.8 139 47.5
Potri.004G176500 Populus trichocarpa HOM05D005689 ORTHO05D007060 1.5e-26 123.2 114 49.1
Rhsim11G0192800 Rhododendron simsii HOM05D005689 ORTHO05D007060 2.6e-21 105.9 73 63.0
AUR62017814 Chenopodium quinoa HOM05D005689 ORTHO05D007060 2.2e-20 102.8 68 61.8
AUR62003497 Chenopodium quinoa HOM05D005689 ORTHO05D007060 1.8e-19 99.8 68 58.8
Oeu028973.1 Olea europaea HOM05D005689 ORTHO05D007060 2.4e-19 99.4 67 59.7
RcHm_v2.0_Chr4g0392001 Rosa chinensis HOM05D005689 ORTHO05D007060 5.5e-16 88.2 139 34.5
Ah.01g023120 Amaranthus hybridus HOM05D005689 ORTHO05D007060 4.8e-12 75.1 47 63.8
MCO02G011 Micromonas commoda HOM05D005689 ORTHO05D007060 3.1e-11 72.4 159 27.0
Pp3c14_6180 Physcomitrium patens HOM05D004554 ORTHO05D005360 2.6e-10 69.3 139 32.4
PRCOL_00005825 Prasinoderma coloniale HOM05D005689 ORTHO05D007060 1.7e-09 66.6 112 32.1
Carub.0002s1001 Capsella rubella HOM05D004554 ORTHO05D005360 1.5e-08 63.5 138 31.2
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 1.5e-08 63.5 138 29.7
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 2.5e-08 62.8 138 29.7
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 2.5e-08 62.8 138 29.0
Mapoly0010s0129 Marchantia polymorpha HOM05D004554 ORTHO05D005360 2.5e-08 62.8 139 30.2
Sp5g35300 Schrenkiella parvula HOM05D004554 ORTHO05D005360 2.5e-08 62.8 138 31.2
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 3.2e-08 62.4 138 29.0
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 3.2e-08 62.4 138 29.0
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 3.2e-08 62.4 138 29.0
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 4.2e-08 62.0 138 30.4
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 4.2e-08 62.0 138 30.4
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 4.2e-08 62.0 138 30.4
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 4.2e-08 62.0 138 29.7
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 4.2e-08 62.0 138 29.0
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 4.2e-08 62.0 138 28.3
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 4.2e-08 62.0 138 30.4
AagrBONN_evm.TU.Sc2ySwM_362.569 Anthoceros agrestis HOM05D004554 ORTHO05D005360 5.5e-08 61.6 138 30.4
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 5.5e-08 61.6 138 29.0
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 7.2e-08 61.2 138 29.0
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 7.2e-08 61.2 138 29.0
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 9.4e-08 60.8 134 28.4
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 9.4e-08 60.8 138 28.3
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 1.6e-07 60.1 138 28.3
Potri.001G043400 Populus trichocarpa HOM05D004554 ORTHO05D005360 1.6e-07 60.1 138 28.3
SGA_v2.0_scaffold199G41205 Striga asiatica HOM05D005689 ORTHO05D007060 1.6e-07 60.1 49 44.9
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 1.6e-07 60.1 135 30.4
CARHR074020 Cardamine hirsuta HOM05D004554 ORTHO05D005360 2.1e-07 59.7 138 29.7
TWI31G0401 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 2.1e-07 59.7 138 27.5
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 2.1e-07 59.7 138 30.4
CANSAT56G2605 Cannabis sativa HOM05D004554 ORTHO05D005360 2.7e-07 59.3 138 27.5
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 2.7e-07 59.3 138 28.3
Zm00001eb331160 Zea mays HOM05D004554 ORTHO05D005360 4.7e-07 58.5 137 29.9
Actinidia08808 Actinidia chinensis HOM05D004554 ORTHO05D005360 8.0e-07 57.8 138 26.8
Hma1.2p1_0515F.1_g170190 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 8.0e-07 57.8 138 26.1
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 1.0e-06 57.4 138 27.5
PSO170G6065 Papaver somniferum HOM05D004554 ORTHO05D005360 1.8e-06 56.6 138 27.5
PSO541G2287 Papaver somniferum HOM05D004554 ORTHO05D005360 1.8e-06 56.6 138 26.8
Dinv30578 Davidia involucrata HOM05D004554 ORTHO05D005360 2.3e-06 56.2 138 26.1
HanXRQChr05g0150591 Helianthus annuus HOM05D005689 ORTHO05D007060 2.3e-06 56.2 44 56.8
SEGI_00661 Sequoiadendron giganteum HOM05D004554 ORTHO05D005360 2.3e-06 56.2 141 29.1
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 3.0e-06 55.8 138 26.1
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 3.0e-06 55.8 138 26.1
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 3.0e-06 55.8 138 26.1
CSS0043216 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 4.0e-06 55.5 138 24.6
PGSC0003DMG402028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 5.2e-06 55.1 138 26.1
Os04g0503800 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 8.8e-06 54.3 114 30.7


User provided reference genes

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