Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO228G0064 Selaginella moellendorffii HOM05D003972 ORTHO05D004609 9.2e-99 363.6 191 100.0
Pp3c21_15430 Physcomitrium patens HOM05D003972 ORTHO05D004609 4.8e-31 138.7 186 38.2
Pp3c21_13430 Physcomitrium patens HOM05D003972 ORTHO05D004609 6.3e-31 138.3 186 38.2
vmacro13664 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 6.9e-30 134.8 186 38.2
HPP92_003787 Vanilla planifolia HOM05D003972 ORTHO05D004609 9.1e-30 134.4 184 37.5
Nn2g15387 Nelumbo nucifera HOM05D003972 ORTHO05D004609 4.5e-29 132.1 186 36.6
Solyc01g087120.3 Solanum lycopersicum HOM05D003972 ORTHO05D004609 7.7e-29 131.3 186 35.5
TPR.G12160 Trifolium pratense HOM05D003972 ORTHO05D004609 7.7e-29 131.3 186 35.5
MD02G1312800 Malus domestica HOM05D003972 ORTHO05D004609 1.3e-28 130.6 186 33.9
PGSC0003DMG400006869 Solanum tuberosum HOM05D003972 ORTHO05D004609 1.7e-28 130.2 186 35.5
Sopen01g034180 Solanum pennellii HOM05D003972 ORTHO05D004609 2.9e-28 129.4 186 34.9
CAN.G1560.6 Capsicum annuum HOM05D003972 ORTHO05D004609 3.8e-28 129.0 186 35.5
Nitab4.5_0000634g0150 Nicotiana tabacum HOM05D003972 ORTHO05D004609 3.8e-28 129.0 186 35.5
Lalb_Chr08g0232821 Lupinus albus HOM05D003972 ORTHO05D004609 6.5e-28 128.3 186 35.5
MD07G1010400 Malus domestica HOM05D003972 ORTHO05D004609 6.5e-28 128.3 186 33.9
Pp3c11_16260 Physcomitrium patens HOM05D003972 ORTHO05D004609 6.5e-28 128.3 181 38.1
MBI04_g36067_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 1.1e-27 127.5 186 34.4
Peaxi162Scf00428g00211 Petunia axillaris HOM05D003972 ORTHO05D004609 1.1e-27 127.5 186 35.5
Os06g0646500 Oryza sativa ssp. japonica HOM05D003972 ORTHO05D004609 1.9e-27 126.7 185 34.1
MSTRG.5022 Avicennia marina HOM05D003972 ORTHO05D004609 2.5e-27 126.3 186 35.5
MSTRG.28071 Avicennia marina HOM05D003972 ORTHO05D004609 3.2e-27 125.9 186 34.4
Lalb_Chr11g0073961 Lupinus albus HOM05D003972 ORTHO05D004609 4.2e-27 125.6 186 35.5
Rhsim07G0055300 Rhododendron simsii HOM05D003972 ORTHO05D004609 4.2e-27 125.6 186 36.0
Hund16627 Selenicereus undatus HOM05D003972 ORTHO05D004609 4.2e-27 125.6 186 34.9
Thecc.01G411300 Theobroma cacao HOM05D003972 ORTHO05D004609 5.5e-27 125.2 186 33.9
arahy.Tifrunner.gnm1.ann1.XF35YI Arachis hypogaea HOM05D003972 ORTHO05D004609 7.2e-27 124.8 189 33.3
TWI09G1021 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 7.2e-27 124.8 185 35.7
Actinidia20668 Actinidia chinensis HOM05D003972 ORTHO05D004609 9.4e-27 124.4 186 35.5
Oeu047573.1 Olea europaea HOM05D003972 ORTHO05D004609 9.4e-27 124.4 186 34.4
arahy.Tifrunner.gnm1.ann1.9I3PL7 Arachis hypogaea HOM05D003972 ORTHO05D004609 1.2e-26 124.0 189 33.3
Ca_14380_v3 Cicer arietinum L. HOM05D003972 ORTHO05D004609 1.2e-26 124.0 186 35.5
TWI73G1179 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 1.2e-26 124.0 185 34.1
Zm00001eb188600 Zea mays HOM05D003972 ORTHO05D004609 1.2e-26 124.0 183 33.3
THA.LOC104819071 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 1.6e-26 123.6 185 36.8
CSS0031611 Camellia sinensis var. sinensis HOM05D003972 ORTHO05D004609 2.1e-26 123.2 181 33.7
AUR62027358 Chenopodium quinoa HOM05D003972 ORTHO05D004609 2.1e-26 123.2 183 36.6
Glyma.15G273900 Glycine max HOM05D003972 ORTHO05D004609 2.1e-26 123.2 186 33.3
PSO384G2850 Papaver somniferum HOM05D003972 ORTHO05D004609 2.1e-26 123.2 188 33.0
TAR633G1993 Trochodendron aralioides HOM05D003972 ORTHO05D004609 2.1e-26 123.2 186 34.4
Glyma.08G155200 Glycine max HOM05D003972 ORTHO05D004609 2.7e-26 122.9 186 33.9
HanXRQChr01g0016231 Helianthus annuus HOM05D003972 ORTHO05D004609 4.7e-26 122.1 181 34.3
Lj7A570T56 Lonicera japonica HOM05D003972 ORTHO05D004609 4.7e-26 122.1 188 32.4
PSO339G6021 Papaver somniferum HOM05D003972 ORTHO05D004609 4.7e-26 122.1 188 33.0
SalBow6G4991 Salvia bowleyana HOM05D003972 ORTHO05D004609 4.7e-26 122.1 186 34.4
SalBow8G4898 Salvia bowleyana HOM05D003972 ORTHO05D004609 4.7e-26 122.1 186 34.4
TAR633G2347 Trochodendron aralioides HOM05D003972 ORTHO05D004609 4.7e-26 122.1 186 33.9
MELO3C023548.2 Cucumis melo HOM05D003972 ORTHO05D004609 6.1e-26 121.7 183 35.0
Lsat_1_v5_gn_1_107421 Lactuca sativa HOM05D003972 ORTHO05D004609 6.1e-26 121.7 186 32.3
Manes.10G143400 Manihot esculenta HOM05D003972 ORTHO05D004609 6.1e-26 121.7 186 32.8
CDE05G0778 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 7.9e-26 121.3 185 33.0
AUR62009382 Chenopodium quinoa HOM05D003972 ORTHO05D004609 7.9e-26 121.3 186 36.0
AUR62027419 Chenopodium quinoa HOM05D003972 ORTHO05D004609 7.9e-26 121.3 183 36.1
Mapoly0003s0068 Marchantia polymorpha HOM05D003972 ORTHO05D004609 7.9e-26 121.3 187 36.4
Nn7g36192 Nelumbo nucifera HOM05D003972 ORTHO05D004609 7.9e-26 121.3 186 33.3
Prupe.2G012700 Prunus persica HOM05D003972 ORTHO05D004609 7.9e-26 121.3 183 33.3
THA.LOC104809854 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 7.9e-26 121.3 189 33.9
Atru.chr11.2659 Acer truncatum HOM05D003972 ORTHO05D004609 1.0e-25 120.9 186 33.3
EL10Ac3g05626 Beta vulgaris HOM05D003972 ORTHO05D004609 1.0e-25 120.9 186 36.0
Gohir.A12G094100 Gossypium hirsutum HOM05D003972 ORTHO05D004609 1.0e-25 120.9 186 34.4
Lj4g0010030 Lotus japonicus HOM05D003972 ORTHO05D004609 1.0e-25 120.9 186 32.8
CDE05G2400 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 1.4e-25 120.6 185 33.5
CsaV3_7G031080 Cucumis sativus L. HOM05D003972 ORTHO05D004609 1.4e-25 120.6 186 33.9
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 1.4e-25 120.6 186 31.7
Oeu006575.2 Olea europaea HOM05D003972 ORTHO05D004609 1.4e-25 120.6 186 33.3
HanXRQChr16g0524521 Helianthus annuus HOM05D003972 ORTHO05D004609 1.8e-25 120.2 186 31.2
Medtr3g028730 Medicago truncatula HOM05D003972 ORTHO05D004609 1.8e-25 120.2 186 34.9
SEGI_23171 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 1.8e-25 120.2 178 34.8
Duzib138G0053 Durio zibethinus HOM05D003972 ORTHO05D004609 2.3e-25 119.8 186 34.4
MBI01_g18885_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 2.3e-25 119.8 182 34.6
Phvul.005G021000 Phaseolus vulgaris HOM05D003972 ORTHO05D004609 2.3e-25 119.8 186 33.3
Sed0003633 Sechium edule HOM05D003972 ORTHO05D004609 2.3e-25 119.8 186 32.8
Aa31LG5G18610 Aethionema arabicum HOM05D003972 ORTHO05D004609 3.0e-25 119.4 181 33.1
Aqoxy2G00123 Aquilegia oxysepala HOM05D003972 ORTHO05D004609 3.0e-25 119.4 186 33.3
CANSAT80G0274 Cannabis sativa HOM05D003972 ORTHO05D004609 3.9e-25 119.0 186 35.5
ClCG09G004190 Citrullus lanatus HOM05D003972 ORTHO05D004609 3.9e-25 119.0 183 35.0
Gohir.D12G096966 Gossypium hirsutum HOM05D003972 ORTHO05D004609 3.9e-25 119.0 186 33.9
QL04p006659 Quercus lobata HOM05D003972 ORTHO05D004609 3.9e-25 119.0 183 33.3
VMungo1080G1024 Vigna mungo HOM05D003972 ORTHO05D004609 3.9e-25 119.0 186 33.3
PGR044G2681 Punica granatum HOM05D003972 ORTHO05D004609 6.7e-25 118.2 188 33.5
COL.COLO4_23932 Corchorus olitorius HOM05D003972 ORTHO05D004609 1.1e-24 117.5 216 30.6
Gorai.008G105300 Gossypium raimondii HOM05D003972 ORTHO05D004609 1.1e-24 117.5 186 33.9
RcHm_v2.0_Chr1g0315911 Rosa chinensis HOM05D003972 ORTHO05D004609 1.1e-24 117.5 185 33.0
SalBow5G3531 Salvia bowleyana HOM05D003972 ORTHO05D004609 1.1e-24 117.5 190 33.2
CiPaw.13G004600 Carya illinoinensis HOM05D003972 ORTHO05D004609 2.0e-24 116.7 186 31.7
Nitab4.5_0002179g0040 Nicotiana tabacum HOM05D003972 ORTHO05D004609 2.0e-24 116.7 222 32.0
Sed0017110 Sechium edule HOM05D003972 ORTHO05D004609 2.0e-24 116.7 183 33.9
GSVIVG01032087001 Vitis vinifera HOM05D003972 ORTHO05D004609 2.0e-24 116.7 186 33.3
ECA248G3800 Erigeron canadensis HOM05D003972 ORTHO05D004609 2.6e-24 116.3 186 31.7
FAN01G2341 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.6e-24 116.3 181 33.1
FAN03G0639 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.6e-24 116.3 181 33.1
FAN06G4274 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.6e-24 116.3 181 33.1
FAN10G2592 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.6e-24 116.3 181 33.1
Migut.N01593 Erythranthe guttata HOM05D003972 ORTHO05D004609 3.3e-24 115.9 186 31.7
FvH4_7g01010 Fragaria vesca HOM05D003972 ORTHO05D004609 4.4e-24 115.5 181 33.1
HanXRQChr17g0562951 Helianthus annuus HOM05D003972 ORTHO05D004609 5.7e-24 115.2 186 31.2
Sc11g0009210 Simmondsia chinensis HOM05D003972 ORTHO05D004609 5.7e-24 115.2 186 31.2
Oeu014581.1 Olea europaea HOM05D003972 ORTHO05D004609 9.7e-24 114.4 193 31.6
Psat5g207400 Pisum sativum HOM05D003972 ORTHO05D004609 9.7e-24 114.4 186 33.3
unitig_8.g3624 Utricularia gibba HOM05D003972 ORTHO05D004609 1.7e-23 113.6 189 32.8
Hund14179 Selenicereus undatus HOM05D003972 ORTHO05D004609 2.8e-23 112.8 186 32.3
A03p05990 Brassica napus HOM05D003972 ORTHO05D004609 3.7e-23 112.5 183 33.9
Ciclev10032620m.g Citrus clementina HOM05D003972 ORTHO05D004609 3.7e-23 112.5 185 31.4
Potri.009G061600 Populus trichocarpa HOM05D003972 ORTHO05D004609 3.7e-23 112.5 183 32.8
Carub.0006s1161 Capsella rubella HOM05D003972 ORTHO05D004609 4.8e-23 112.1 183 33.3
PGR042G2196 Punica granatum HOM05D003972 ORTHO05D004609 4.8e-23 112.1 188 32.4
BcaC04g19115 Brassica carinata HOM05D003972 ORTHO05D004609 6.3e-23 111.7 183 33.9
BcaNung01885 Brassica carinata HOM05D003972 ORTHO05D004609 6.3e-23 111.7 183 33.9
C03p07030 Brassica napus HOM05D003972 ORTHO05D004609 6.3e-23 111.7 183 33.9
C09p63620 Brassica napus HOM05D003972 ORTHO05D004609 6.3e-23 111.7 183 33.9
BolC3t13201H Brassica oleracea HOM05D003972 ORTHO05D004609 6.3e-23 111.7 183 33.9
Sabra09G0045500 Salix brachista HOM05D003972 ORTHO05D004609 6.3e-23 111.7 183 32.8
BolC9t59206H Brassica oleracea HOM05D003972 ORTHO05D004609 8.2e-23 111.3 183 33.9
BraA03t09936Z Brassica rapa HOM05D003972 ORTHO05D004609 8.2e-23 111.3 183 33.9
A10p24800 Brassica napus HOM05D003972 ORTHO05D004609 1.1e-22 110.9 183 33.9
BraA10t44544Z Brassica rapa HOM05D003972 ORTHO05D004609 1.1e-22 110.9 183 33.9
ATR0605G205 Amborella trichopoda HOM05D003972 ORTHO05D004609 1.4e-22 110.5 186 31.2
CARHR199980 Cardamine hirsuta HOM05D003972 ORTHO05D004609 1.4e-22 110.5 183 32.8
Duzib268G1708 Durio zibethinus HOM05D003972 ORTHO05D004609 1.4e-22 110.5 186 32.8
Lsat_1_v5_gn_1_107400 Lactuca sativa HOM05D003972 ORTHO05D004609 1.8e-22 110.2 186 31.7
Sp6g30570 Schrenkiella parvula HOM05D003972 ORTHO05D004609 1.8e-22 110.2 183 33.9
A02p01940 Brassica napus HOM05D003972 ORTHO05D004609 2.4e-22 109.8 183 33.3
BraA02t05167Z Brassica rapa HOM05D003972 ORTHO05D004609 2.4e-22 109.8 183 33.3
DCAR_006337 Daucus carota HOM05D003972 ORTHO05D004609 3.1e-22 109.4 186 29.0
BcaNung01153 Brassica carinata HOM05D003972 ORTHO05D004609 4.1e-22 109.0 183 33.3
BolC2t06557H Brassica oleracea HOM05D003972 ORTHO05D004609 4.1e-22 109.0 183 33.3
SGA_v2.0_scaffold24G10676 Striga asiatica HOM05D003972 ORTHO05D004609 4.1e-22 109.0 229 30.1
Thhalv10014516m.g Eutrema salsugineum HOM05D003972 ORTHO05D004609 7.0e-22 108.2 183 33.3
RcHm_v2.0_Chr7g0187561 Rosa chinensis HOM05D003972 ORTHO05D004609 7.0e-22 108.2 181 32.6
Aa31LG3G15250 Aethionema arabicum HOM05D003972 ORTHO05D004609 9.1e-22 107.8 183 32.8
FvH4_5g10590 Fragaria vesca HOM05D003972 ORTHO05D004609 9.1e-22 107.8 181 32.6
SEGI_22482 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 9.1e-22 107.8 178 33.7
Haze_03211 Corylus avellana HOM05D000015 ORTHO05D004609 2.0e-21 106.7 203 29.6
ClCG10G012410 Citrullus lanatus HOM05D003972 ORTHO05D004609 3.5e-21 105.9 213 28.6
FAN13G3241 Fragaria x ananassa HOM05D003972 ORTHO05D004609 3.5e-21 105.9 181 32.0
Ah.06g182400 Amaranthus hybridus HOM05D003972 ORTHO05D004609 4.5e-21 105.5 186 32.3
AL6G24070 Arabidopsis lyrata HOM05D003972 ORTHO05D004609 4.5e-21 105.5 183 31.7
FAN18G0724 Fragaria x ananassa HOM05D003972 ORTHO05D004609 5.9e-21 105.1 181 31.5
AT5G13450 Arabidopsis thaliana HOM05D003972 ORTHO05D004609 1.0e-20 104.4 183 31.1
CBR_g17944 Chara braunii HOM05D003972 ORTHO05D004609 1.0e-20 104.4 181 31.5
FAN04G1554 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.0e-20 104.4 181 32.0
AagrBONN_evm.TU.Sc2ySwM_344.1217 Anthoceros agrestis HOM05D003972 ORTHO05D004609 1.7e-20 103.6 159 35.2
Ah.06g182390 Amaranthus hybridus HOM05D003972 ORTHO05D004609 4.2e-19 99.0 201 30.3
SHI04087 Sapria himalayana HOM05D003972 ORTHO05D004609 5.5e-19 98.6 186 28.5
Cc02_g27920 Coffea canephora HOM05D003972 ORTHO05D004609 8.0e-18 94.7 148 31.8
Lj9A631T54 Lonicera japonica HOM05D003972 ORTHO05D004609 8.0e-18 94.7 249 28.5
BcaB01g05358 Brassica carinata HOM05D003972 ORTHO05D004609 1.8e-17 93.6 189 31.2
SalBow5G0402 Salvia bowleyana HOM05D003972 ORTHO05D004609 1.2e-16 90.9 204 31.4
Sed0014658 Sechium edule HOM05D003972 ORTHO05D004609 1.3e-15 87.4 183 32.2
Haze_20480 Corylus avellana HOM05D003972 ORTHO05D004609 2.4e-14 83.2 114 32.5
Haze_18530 Corylus avellana HOM05D003972 ORTHO05D004609 3.1e-14 82.8 114 33.3
vmacro21185 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 9.1e-14 81.3 291 22.7
PRCOL_00004246 Prasinoderma coloniale HOM05D003972 ORTHO05D004609 1.2e-13 80.9 181 28.2
Dinv43448 Davidia involucrata HOM05D003972 ORTHO05D004609 2.0e-13 80.1 174 28.7
BcaB06g27143 Brassica carinata HOM05D003972 ORTHO05D004609 2.2e-12 76.6 140 29.3
QL04p007936 Quercus lobata HOM05D003972 ORTHO05D004609 2.9e-12 76.3 149 28.9
Cre16.g680000 Chlamydomonas reinhardtii HOM05D003972 ORTHO05D004609 6.5e-12 75.1 180 22.8
SGA_v2.0_scaffold5G02971 Striga asiatica HOM05D003972 ORTHO05D004609 1.5e-11 73.9 128 31.2
CsaV3_3G032180 Cucumis sativus L. HOM05D003972 ORTHO05D004609 5.5e-11 72.0 96 36.5
MCO05G116 Micromonas commoda HOM05D003972 ORTHO05D004609 1.6e-10 70.5 184 27.2
MELO3C030924.2 Cucumis melo HOM05D003972 ORTHO05D004609 6.1e-10 68.6 140 27.9
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 8.0e-10 68.2 101 36.6
Rhsim01G0129500 Rhododendron simsii HOM05D003972 ORTHO05D004609 5.2e-09 65.5 231 22.9
Cpa.g.sc245.17 Carica papaya HOM05D003972 ORTHO05D004609 2.8e-07 59.7 183 25.7
Actinidia21554 Actinidia chinensis HOM05D003972 ORTHO05D004609 1.8e-06 57.0 92 29.3


User provided reference genes

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