Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO228G0049 Selaginella moellendorffii HOM05D005052 ORTHO05D006226 1.2e-208 729.6 366 100.0
ATR0712G043 Amborella trichopoda HOM05D005052 ORTHO05D006226 3.7e-173 611.7 364 81.6
Zm00001eb103800 Zea mays HOM05D005052 ORTHO05D006226 1.2e-171 606.7 361 81.7
Gohir.D12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 2.0e-171 605.9 364 79.7
MBI05_g23388_MAGBIO Magnolia biondii HOM05D005052 ORTHO05D006226 2.0e-171 605.9 364 80.5
Gohir.A12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 3.5e-171 605.1 364 79.7
RcHm_v2.0_Chr2g0099021 Rosa chinensis HOM05D005052 ORTHO05D006226 3.5e-171 605.1 364 79.7
Os09g0539100 Oryza sativa ssp. japonica HOM05D005052 ORTHO05D006226 5.9e-171 604.4 361 81.2
Gorai.008G062200 Gossypium raimondii HOM05D005052 ORTHO05D006226 2.3e-170 602.4 365 79.7
Actinidia22954 Actinidia chinensis HOM05D005052 ORTHO05D006226 2.9e-170 602.1 364 79.7
MD15G1242600 Malus domestica HOM05D005052 ORTHO05D006226 2.9e-170 602.1 364 79.7
Pp3c13_24150 Physcomitrium patens HOM05D005052 ORTHO05D006226 2.9e-170 602.1 364 78.8
TWI53G1960 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 3.8e-170 601.7 364 79.9
FAN19G0738 Fragaria x ananassa HOM05D005052 ORTHO05D006226 1.1e-169 600.1 366 78.4
FvH4_1g11430 Fragaria vesca HOM05D005052 ORTHO05D006226 1.5e-169 599.7 366 78.4
Nn5g28565 Nelumbo nucifera HOM05D005052 ORTHO05D006226 1.5e-169 599.7 364 79.4
Prupe.7G171600 Prunus persica HOM05D005052 ORTHO05D006226 1.9e-169 599.4 364 79.4
COL.COLO4_22462 Corchorus olitorius HOM05D005052 ORTHO05D006226 2.5e-169 599.0 364 78.3
Lj2g0011110 Lotus japonicus HOM05D005052 ORTHO05D006226 2.5e-169 599.0 364 79.4
CsaV3_3G000670 Cucumis sativus L. HOM05D005052 ORTHO05D006226 3.3e-169 598.6 364 78.8
FAN23G2381 Fragaria x ananassa HOM05D005052 ORTHO05D006226 4.3e-169 598.2 366 78.1
FAN28G0876 Fragaria x ananassa HOM05D005052 ORTHO05D006226 4.3e-169 598.2 366 77.9
Psat2g153160 Pisum sativum HOM05D005052 ORTHO05D006226 4.3e-169 598.2 363 78.5
CANSAT25G2560 Cannabis sativa HOM05D005052 ORTHO05D006226 5.6e-169 597.8 364 79.1
Duzib147G0491 Durio zibethinus HOM05D005052 ORTHO05D006226 1.6e-168 596.3 364 78.3
Nn1g06262 Nelumbo nucifera HOM05D005052 ORTHO05D006226 1.6e-168 596.3 364 78.8
Ca_24920_v3 Cicer arietinum L. HOM05D005052 ORTHO05D006226 2.8e-168 595.5 364 78.3
MELO3C013755.2 Cucumis melo HOM05D005052 ORTHO05D006226 2.8e-168 595.5 364 78.6
CiPaw.07G061100 Carya illinoinensis HOM05D005052 ORTHO05D006226 3.6e-168 595.1 364 78.6
Sabra05G0090900 Salix brachista HOM05D005052 ORTHO05D006226 3.6e-168 595.1 365 78.6
Atru.chr3.855 Acer truncatum HOM05D005052 ORTHO05D006226 4.7e-168 594.7 364 78.0
THA.LOC104821339 Tarenaya hassleriana HOM05D005052 ORTHO05D006226 6.1e-168 594.3 361 78.1
HanXRQChr13g0424561 Helianthus annuus HOM05D005052 ORTHO05D006226 8.0e-168 594.0 364 78.0
Sed0003793 Sechium edule HOM05D005052 ORTHO05D006226 1.0e-167 593.6 361 79.2
Thecc.01G014600 Theobroma cacao HOM05D005052 ORTHO05D006226 1.0e-167 593.6 364 78.6
Medtr5g022580 Medicago truncatula HOM05D005052 ORTHO05D006226 1.4e-167 593.2 364 77.5
Cpa.g.sc6.286 Carica papaya HOM05D005052 ORTHO05D006226 2.3e-167 592.4 364 78.3
Eucgr.J02467 Eucalyptus grandis HOM05D005052 ORTHO05D006226 3.0e-167 592.0 364 78.3
Cc07_g11060 Coffea canephora HOM05D005052 ORTHO05D006226 4.0e-167 591.7 364 78.0
ECA240G3065 Erigeron canadensis HOM05D005052 ORTHO05D006226 4.0e-167 591.7 364 78.0
Potri.005G110900 Populus trichocarpa HOM05D005052 ORTHO05D006226 4.0e-167 591.7 364 78.0
Rhsim08G0032100 Rhododendron simsii HOM05D005052 ORTHO05D006226 4.0e-167 591.7 361 78.1
GSVIVG01018732001 Vitis vinifera HOM05D005052 ORTHO05D006226 5.2e-167 591.3 364 78.3
FAN26G3360 Fragaria x ananassa HOM05D005052 ORTHO05D006226 8.9e-167 590.5 379 75.7
vmacro18426 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 8.9e-167 590.5 364 77.2
Phvul.002G106700 Phaseolus vulgaris HOM05D005052 ORTHO05D006226 1.2e-166 590.1 363 78.8
CiPaw.08G130500 Carya illinoinensis HOM05D005052 ORTHO05D006226 1.5e-166 589.7 363 78.5
AUR62003338 Chenopodium quinoa HOM05D005052 ORTHO05D006226 1.5e-166 589.7 364 78.3
Nitab4.5_0001892g0080 Nicotiana tabacum HOM05D005052 ORTHO05D006226 1.5e-166 589.7 364 77.5
TPR.G10542 Trifolium pratense HOM05D005052 ORTHO05D006226 1.5e-166 589.7 360 77.8
AUR62029500 Chenopodium quinoa HOM05D005052 ORTHO05D006226 2.0e-166 589.3 364 78.3
ClCG10G000590 Citrullus lanatus HOM05D005052 ORTHO05D006226 2.0e-166 589.3 364 78.0
Gorai.007G192400 Gossypium raimondii HOM05D005052 ORTHO05D006226 2.0e-166 589.3 364 77.7
VMungo1215G2918 Vigna mungo HOM05D005052 ORTHO05D006226 2.0e-166 589.3 363 78.2
Hund16503 Selenicereus undatus HOM05D005052 ORTHO05D006226 4.4e-166 588.2 364 78.0
TAR381G1626 Trochodendron aralioides HOM05D005052 ORTHO05D006226 4.4e-166 588.2 365 78.1
PSO541G6199 Papaver somniferum HOM05D005052 ORTHO05D006226 5.7e-166 587.8 364 78.0
arahy.Tifrunner.gnm1.ann1.1KVD1S Arachis hypogaea HOM05D005052 ORTHO05D006226 7.5e-166 587.4 364 77.5
arahy.Tifrunner.gnm1.ann1.PYN71E Arachis hypogaea HOM05D005052 ORTHO05D006226 7.5e-166 587.4 364 77.5
Oeu048477.1 Olea europaea HOM05D005052 ORTHO05D006226 7.5e-166 587.4 364 77.2
Sc03g0003700 Simmondsia chinensis HOM05D005052 ORTHO05D006226 7.5e-166 587.4 361 77.8
Nitab4.5_0008943g0020 Nicotiana tabacum HOM05D005052 ORTHO05D006226 9.8e-166 587.0 364 77.2
PGR102G0465 Punica granatum HOM05D005052 ORTHO05D006226 9.8e-166 587.0 364 78.0
Migut.C00533 Erythranthe guttata HOM05D005052 ORTHO05D006226 1.7e-165 586.3 363 77.7
Glyma.11G078700 Glycine max HOM05D005052 ORTHO05D006226 2.2e-165 585.9 364 77.2
Lalb_Chr09g0321611 Lupinus albus HOM05D005052 ORTHO05D006226 2.2e-165 585.9 363 78.0
Lalb_Chr05g0212261 Lupinus albus HOM05D005052 ORTHO05D006226 3.7e-165 585.1 363 78.2
MSTRG.2728 Avicennia marina HOM05D005052 ORTHO05D006226 4.9e-165 584.7 364 76.4
Glyma.01G164300 Glycine max HOM05D005052 ORTHO05D006226 6.4e-165 584.3 363 78.0
SalBow3G4284 Salvia bowleyana HOM05D005052 ORTHO05D006226 6.4e-165 584.3 364 76.6
PSO675G6089 Papaver somniferum HOM05D005052 ORTHO05D006226 8.3e-165 583.9 364 77.7
SGA_v2.0_scaffold94G28549 Striga asiatica HOM05D005052 ORTHO05D006226 8.3e-165 583.9 364 76.9
Peaxi162Scf00328g00523 Petunia axillaris HOM05D005052 ORTHO05D006226 1.4e-164 583.2 364 76.9
QL06p051082 Quercus lobata HOM05D005052 ORTHO05D006226 1.8e-164 582.8 363 77.7
TWI09G1579 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 1.8e-164 582.8 364 77.5
Dinv40116 Davidia involucrata HOM05D005052 ORTHO05D006226 2.4e-164 582.4 364 76.4
Cfa007001 Carpinus fangiana HOM05D005052 ORTHO05D006226 5.4e-164 581.3 364 76.9
Gohir.D11G180500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 9.2e-164 580.5 364 77.2
Aqoxy4G02022 Aquilegia oxysepala HOM05D005052 ORTHO05D006226 1.2e-163 580.1 364 77.2
Solyc02g083590.3 Solanum lycopersicum HOM05D005052 ORTHO05D006226 2.0e-163 579.3 364 75.8
Sopen02g028370 Solanum pennellii HOM05D005052 ORTHO05D006226 2.0e-163 579.3 364 75.8
AagrBONN_evm.TU.Sc2ySwM_340.387 Anthoceros agrestis HOM05D005052 ORTHO05D006226 4.6e-163 578.2 365 75.1
CAN.G1274.31 Capsicum annuum HOM05D005052 ORTHO05D006226 4.6e-163 578.2 364 75.8
DCAR_022909 Daucus carota HOM05D005052 ORTHO05D006226 4.6e-163 578.2 363 77.4
Lj4A222T51 Lonicera japonica HOM05D005052 ORTHO05D006226 5.9e-163 577.8 387 73.6
PGSC0003DMG400003582 Solanum tuberosum HOM05D005052 ORTHO05D006226 1.0e-162 577.0 364 75.5
Aa31LG1G14600 Aethionema arabicum HOM05D005052 ORTHO05D006226 2.3e-162 575.9 364 76.1
Haze_03731 Corylus avellana HOM05D005052 ORTHO05D006226 2.3e-162 575.9 378 74.1
HPP92_025914 Vanilla planifolia HOM05D005052 ORTHO05D006226 8.6e-162 573.9 361 76.2
AL8G45470 Arabidopsis lyrata HOM05D005052 ORTHO05D006226 4.3e-161 571.6 364 75.5
HPP92_025909 Vanilla planifolia HOM05D005052 ORTHO05D006226 5.6e-161 571.2 361 75.9
Thhalv10004219m.g Eutrema salsugineum HOM05D005052 ORTHO05D006226 7.3e-161 570.9 364 75.0
AT5G66120 Arabidopsis thaliana HOM05D005052 ORTHO05D006226 9.5e-161 570.5 364 75.5
CARHR281630 Cardamine hirsuta HOM05D005052 ORTHO05D006226 9.5e-161 570.5 364 75.0
Gohir.A11G173500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 1.2e-160 570.1 345 78.8
BcaB04g20124 Brassica carinata HOM05D005052 ORTHO05D006226 2.8e-160 568.9 364 75.5
BcaC04g23113 Brassica carinata HOM05D005052 ORTHO05D006226 4.7e-160 568.2 364 75.5
C09p12030 Brassica napus HOM05D005052 ORTHO05D006226 4.7e-160 568.2 364 75.5
BolC9t54093H Brassica oleracea HOM05D005052 ORTHO05D006226 4.7e-160 568.2 364 75.5
Carub.0008s2837 Capsella rubella HOM05D005052 ORTHO05D006226 4.7e-160 568.2 364 75.0
Mapoly0031s0094 Marchantia polymorpha HOM05D005052 ORTHO05D006226 1.0e-159 567.0 361 74.0
Sp2g30570 Schrenkiella parvula HOM05D005052 ORTHO05D006226 1.0e-159 567.0 364 75.0
A09p10150 Brassica napus HOM05D005052 ORTHO05D006226 1.4e-159 566.6 364 75.5
BraA09t36659Z Brassica rapa HOM05D005052 ORTHO05D006226 1.4e-159 566.6 364 75.5
vmacro22193 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 4.0e-159 565.1 430 66.0
Zm00001eb331970 Zea mays HOM05D005052 ORTHO05D006226 3.3e-153 545.4 320 82.5
CSS0012363 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 5.2e-151 538.1 328 79.6
CBR_g10969 Chara braunii HOM05D005052 ORTHO05D006226 5.2e-151 538.1 363 72.5
Cre08.g368950 Chlamydomonas reinhardtii HOM05D005052 ORTHO05D006226 1.7e-146 523.1 364 69.5
Ciclev10025711m.g Citrus clementina HOM05D005052 ORTHO05D006226 1.1e-145 520.4 364 70.1
Lsat_1_v5_gn_3_125660 Lactuca sativa HOM05D005052 ORTHO05D006226 1.4e-140 503.4 342 74.0
DCAR_004732 Daucus carota HOM05D005052 ORTHO05D006226 7.1e-140 501.1 346 69.7
MCO01G625 Micromonas commoda HOM05D005052 ORTHO05D006226 8.6e-138 494.2 363 65.0
Actinidia28717 Actinidia chinensis HOM05D005052 ORTHO05D006226 2.8e-136 489.2 364 68.1
Actinidia17421 Actinidia chinensis HOM05D005052 ORTHO05D006226 5.2e-135 485.0 287 80.8
CDE04G1415 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 1.2e-134 483.8 287 81.2
PRCOL_00000314 Prasinoderma coloniale HOM05D005052 ORTHO05D006226 4.2e-132 475.3 363 65.0
EL10Ac6g15523 Beta vulgaris HOM05D005052 ORTHO05D006226 6.6e-130 468.0 412 59.5
SEGI_14262 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.2e-123 447.2 260 83.8
Ah.03g149130 Amaranthus hybridus HOM05D005052 ORTHO05D006226 4.3e-121 438.7 251 84.1
Manes.02G107200 Manihot esculenta HOM05D005052 ORTHO05D006226 3.4e-118 429.1 253 81.8
Hma1.2p1_0315F.1_g122330 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 7.4e-113 411.4 364 59.3
Dinv33661 Davidia involucrata HOM05D005052 ORTHO05D006226 7.4e-105 384.8 233 78.5
CDE02G2775 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 5.9e-102 375.2 300 64.7
SEGI_08539 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 2.5e-100 369.8 224 78.6
Hma1.2p1_2620F.1_g325580 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 1.9e-92 343.6 436 48.2
CDE02G1558 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 4.2e-84 315.8 256 64.8
Lsat_1_v5_gn_0_46241 Lactuca sativa HOM05D005052 ORTHO05D006226 9.7e-81 304.7 299 51.5
SGA_v2.0_scaffold273G46395 Striga asiatica HOM05D005052 ORTHO05D006226 1.1e-71 274.6 186 67.2
TPR.G6592 Trifolium pratense HOM05D005052 ORTHO05D006226 7.7e-70 268.5 273 53.8
RcHm_v2.0_Chr2g0099011 Rosa chinensis HOM05D005052 ORTHO05D006226 8.5e-69 265.0 246 55.3
Haze_27270 Corylus avellana HOM05D005052 ORTHO05D006226 4.4e-65 252.7 359 41.5
unitig_699.g19702 Utricularia gibba HOM05D005052 ORTHO05D006226 2.0e-62 243.8 161 75.2
Cfa024476 Carpinus fangiana HOM05D003566 ORTHO05D126353 4.1e-55 219.5 346 42.2
Rhsim07G0143100 Rhododendron simsii HOM05D005052 ORTHO05D006226 2.1e-43 180.6 184 55.4
Dinv33662 Davidia involucrata HOM05D005052 ORTHO05D006226 4.7e-43 179.5 116 73.3
SEGI_40904 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 2.3e-42 177.2 113 75.2
unitig_699.g19703 Utricularia gibba HOM05D005052 ORTHO05D006226 2.3e-37 160.6 151 57.0
SEGI_17140 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 3.8e-24 116.7 83 66.3
SEGI_34573 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 3.8e-24 116.7 83 66.3
MD02G1126200 Malus domestica HOM05D005052 ORTHO05D006226 9.2e-23 112.1 129 51.2
MD14G1099300 Malus domestica HOM05D005052 ORTHO05D006226 9.2e-23 112.1 129 51.2
Ah.03g149140 Amaranthus hybridus HOM05D000441 ORTHO05D000340 1.6e-22 111.3 78 65.4
SEGI_22853 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 2.8e-19 100.5 85 62.4
Rhsim07G0135500 Rhododendron simsii HOM05D005052 ORTHO05D006226 8.9e-18 95.5 64 68.8
CDE04G1456 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 8.4e-16 89.0 51 80.4
DCAR_004721 Daucus carota HOM05D005052 ORTHO05D006226 1.0e-13 82.0 109 43.1
Rhsim07G0135600 Rhododendron simsii HOM05D005052 ORTHO05D339393 1.1e-07 62.0 37 70.3


User provided reference genes

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