Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO223G0031 Selaginella moellendorffii HOM05D005292 ORTHO05D006473 1.6e-163 579.3 280 100.0
Mapoly0066s0051 Marchantia polymorpha HOM05D005292 ORTHO05D006473 6.9e-119 431.0 271 74.9
Pp3c6_20320 Physcomitrium patens HOM05D005292 ORTHO05D006473 1.6e-115 419.9 271 73.8
Atru.chr9.1428 Acer truncatum HOM05D005292 ORTHO05D006473 6.7e-114 414.5 274 69.3
Potri.003G114900 Populus trichocarpa HOM05D005292 ORTHO05D006473 1.3e-112 410.2 274 68.6
COL.COLO4_31983 Corchorus olitorius HOM05D005292 ORTHO05D006473 3.7e-112 408.7 274 69.3
PSO782G2032 Papaver somniferum HOM05D005292 ORTHO05D006473 3.7e-112 408.7 274 67.9
Glyma.05G052500 Glycine max HOM05D005292 ORTHO05D006473 8.1e-112 407.5 274 68.2
Manes.02G033900 Manihot esculenta HOM05D005292 ORTHO05D006473 8.1e-112 407.5 274 68.2
GSVIVG01004916001 Vitis vinifera HOM05D005292 ORTHO05D006473 1.1e-111 407.1 274 67.2
PSO478G4449 Papaver somniferum HOM05D005292 ORTHO05D006473 1.4e-111 406.8 274 67.5
Thecc.03G261400 Theobroma cacao HOM05D005292 ORTHO05D006473 1.8e-111 406.4 274 68.2
Gohir.D03G157800 Gossypium hirsutum HOM05D005292 ORTHO05D006473 3.1e-111 405.6 274 67.9
VMungo1215G1740 Vigna mungo HOM05D005292 ORTHO05D006473 3.1e-111 405.6 274 67.9
Duzib084G0213 Durio zibethinus HOM05D005292 ORTHO05D006473 5.3e-111 404.8 275 67.6
Lj4g0005126 Lotus japonicus HOM05D005292 ORTHO05D006473 5.3e-111 404.8 274 66.8
Ca_12278_v3 Cicer arietinum L. HOM05D005292 ORTHO05D006473 6.9e-111 404.4 274 67.5
Potri.001G118000 Populus trichocarpa HOM05D005292 ORTHO05D006473 6.9e-111 404.4 274 66.8
PGR031G2306 Punica granatum HOM05D005292 ORTHO05D006473 6.9e-111 404.4 275 66.2
arahy.Tifrunner.gnm1.ann1.VS5X7Y Arachis hypogaea HOM05D005292 ORTHO05D006473 9.0e-111 404.1 274 67.9
arahy.Tifrunner.gnm1.ann1.YRMJ3W Arachis hypogaea HOM05D005292 ORTHO05D006473 9.0e-111 404.1 274 67.9
MD04G1079900 Malus domestica HOM05D005292 ORTHO05D006473 9.0e-111 404.1 274 67.9
Nn1g01261 Nelumbo nucifera HOM05D005292 ORTHO05D006473 9.0e-111 404.1 274 66.4
CANSAT80G2034 Cannabis sativa HOM05D005292 ORTHO05D006473 1.2e-110 403.7 274 66.4
Eucgr.D01991 Eucalyptus grandis HOM05D005292 ORTHO05D006473 1.2e-110 403.7 275 67.3
Gohir.A03G012000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.2e-110 403.7 274 67.5
TAR636G1323 Trochodendron aralioides HOM05D005292 ORTHO05D006473 1.2e-110 403.7 274 67.9
TPR.G37684 Trifolium pratense HOM05D005292 ORTHO05D006473 1.5e-110 403.3 274 66.8
Ciclev10020454m.g Citrus clementina HOM05D005292 ORTHO05D006473 2.0e-110 402.9 274 67.2
Os10g0169800 Oryza sativa ssp. japonica HOM05D005292 ORTHO05D006473 2.6e-110 402.5 275 67.3
Gorai.003G166300 Gossypium raimondii HOM05D005292 ORTHO05D006473 3.4e-110 402.1 274 67.5
Phvul.003G214500 Phaseolus vulgaris HOM05D005292 ORTHO05D006473 3.4e-110 402.1 274 67.5
Cpa.g.sc29.95 Carica papaya HOM05D005292 ORTHO05D006473 4.5e-110 401.7 274 66.8
Glyma.17G134700 Glycine max HOM05D005292 ORTHO05D006473 5.8e-110 401.4 274 67.5
FAN08G1347 Fragaria x ananassa HOM05D005292 ORTHO05D006473 7.6e-110 401.0 274 67.5
FAN18G3339 Fragaria x ananassa HOM05D005292 ORTHO05D006473 7.6e-110 401.0 274 67.5
Psat4g068120 Pisum sativum HOM05D005292 ORTHO05D006473 7.6e-110 401.0 274 67.2
RcHm_v2.0_Chr7g0201621 Rosa chinensis HOM05D005292 ORTHO05D006473 7.6e-110 401.0 274 67.5
TWI15G0139 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 7.6e-110 401.0 274 66.8
THA.LOC104813867 Tarenaya hassleriana HOM05D005292 ORTHO05D006473 1.0e-109 400.6 274 66.8
Medtr4g102260 Medicago truncatula HOM05D005292 ORTHO05D006473 1.3e-109 400.2 274 66.8
QL12p014915 Quercus lobata HOM05D005292 ORTHO05D006473 1.3e-109 400.2 274 66.8
Cfa012803 Carpinus fangiana HOM05D005292 ORTHO05D006473 1.7e-109 399.8 274 66.8
CSS0004035 Camellia sinensis var. sinensis HOM05D005292 ORTHO05D006473 2.2e-109 399.4 274 66.8
Prupe.5G079200 Prunus persica HOM05D005292 ORTHO05D006473 2.9e-109 399.1 274 66.4
Lalb_Chr05g0225431 Lupinus albus HOM05D005292 ORTHO05D006473 3.8e-109 398.7 274 66.4
CsaV3_5G003780 Cucumis sativus L. HOM05D005292 ORTHO05D006473 4.9e-109 398.3 280 64.6
Oeu016513.1 Olea europaea HOM05D005292 ORTHO05D006473 4.9e-109 398.3 274 66.8
AagrBONN_evm.TU.Sc2ySwM_368.248 Anthoceros agrestis HOM05D005292 ORTHO05D006473 6.4e-109 397.9 270 70.4
Cc08_g13210 Coffea canephora HOM05D005292 ORTHO05D006473 6.4e-109 397.9 274 66.8
CiPaw.11G147800 Carya illinoinensis HOM05D005292 ORTHO05D006473 1.4e-108 396.7 274 66.1
Nitab4.5_0003534g0020 Nicotiana tabacum HOM05D005292 ORTHO05D006473 1.4e-108 396.7 274 66.1
PGSC0003DMG400003959 Solanum tuberosum HOM05D005292 ORTHO05D006473 1.4e-108 396.7 274 66.1
FAN04G0899 Fragaria x ananassa HOM05D005292 ORTHO05D006473 1.9e-108 396.4 274 66.8
Sed0004099 Sechium edule HOM05D005292 ORTHO05D006473 1.9e-108 396.4 280 65.0
CDE09G1063 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 2.5e-108 396.0 273 66.3
AUR62010507 Chenopodium quinoa HOM05D005292 ORTHO05D006473 2.5e-108 396.0 274 65.3
Actinidia02093 Actinidia chinensis HOM05D005292 ORTHO05D006473 3.2e-108 395.6 275 65.8
CAN.G630.87 Capsicum annuum HOM05D005292 ORTHO05D006473 3.2e-108 395.6 274 65.7
Dinv21573 Davidia involucrata HOM05D005292 ORTHO05D006473 3.2e-108 395.6 274 65.7
FAN13G3324 Fragaria x ananassa HOM05D005292 ORTHO05D006473 3.2e-108 395.6 274 66.8
Nitab4.5_0007591g0040 Nicotiana tabacum HOM05D005292 ORTHO05D006473 3.2e-108 395.6 274 65.7
Hund14648 Selenicereus undatus HOM05D005292 ORTHO05D006473 3.2e-108 395.6 274 66.8
Lj8A255T56 Lonicera japonica HOM05D005292 ORTHO05D006473 5.5e-108 394.8 274 66.1
Peaxi162Scf00271g00021 Petunia axillaris HOM05D005292 ORTHO05D006473 5.5e-108 394.8 274 65.7
Aqoxy7G00654 Aquilegia oxysepala HOM05D005292 ORTHO05D006473 7.1e-108 394.4 274 66.1
Hma1.2p1_0367F.1_g137040 Hydrangea macrophylla HOM05D005292 ORTHO05D006473 7.1e-108 394.4 275 65.5
Gohir.D12G223000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 9.3e-108 394.0 273 66.3
CARHR254020 Cardamine hirsuta HOM05D005292 ORTHO05D006473 1.2e-107 393.7 275 64.7
CiPaw.12G105300 Carya illinoinensis HOM05D005292 ORTHO05D006473 1.2e-107 393.7 274 65.0
Migut.A00832 Erythranthe guttata HOM05D005292 ORTHO05D006473 1.2e-107 393.7 274 65.3
ATR0757G031 Amborella trichopoda HOM05D005292 ORTHO05D006473 2.7e-107 392.5 255 70.6
Gohir.A11G020400 Gossypium hirsutum HOM05D005292 ORTHO05D006473 3.5e-107 392.1 274 66.1
AL6G47090 Arabidopsis lyrata HOM05D005292 ORTHO05D006473 4.6e-107 391.7 275 64.4
A03p29600 Brassica napus HOM05D005292 ORTHO05D006473 4.6e-107 391.7 275 65.1
BraA03t12155Z Brassica rapa HOM05D005292 ORTHO05D006473 4.6e-107 391.7 275 65.1
Sopen08g027820 Solanum pennellii HOM05D005292 ORTHO05D006473 4.6e-107 391.7 274 65.3
AT4G12230 Arabidopsis thaliana HOM05D005292 ORTHO05D006473 6.0e-107 391.3 275 64.4
Carub.0006s3135 Capsella rubella HOM05D005292 ORTHO05D006473 6.0e-107 391.3 275 64.4
Sc22g0000600 Simmondsia chinensis HOM05D005292 ORTHO05D006473 7.9e-107 391.0 273 64.5
BcaC01g04601 Brassica carinata HOM05D005292 ORTHO05D006473 1.0e-106 390.6 275 64.7
DCAR_006803 Daucus carota HOM05D005292 ORTHO05D006473 1.0e-106 390.6 271 66.1
Gorai.007G021400 Gossypium raimondii HOM05D005292 ORTHO05D006473 1.0e-106 390.6 275 66.2
MSTRG.12063 Avicennia marina HOM05D005292 ORTHO05D006473 2.3e-106 389.4 271 64.9
Solyc08g079450.3 Solanum lycopersicum HOM05D005292 ORTHO05D006473 3.0e-106 389.0 274 65.0
EL10Ac5g12610 Beta vulgaris HOM05D005292 ORTHO05D006473 3.9e-106 388.7 274 63.9
Thhalv10028717m.g Eutrema salsugineum HOM05D005292 ORTHO05D006473 5.1e-106 388.3 275 64.0
MBI12_g31646_MAGBIO Magnolia biondii HOM05D005292 ORTHO05D006473 5.1e-106 388.3 275 66.5
Sp6g05330 Schrenkiella parvula HOM05D005292 ORTHO05D006473 6.7e-106 387.9 275 64.4
BcaB01g02654 Brassica carinata HOM05D005292 ORTHO05D006473 8.7e-106 387.5 275 64.4
SEGI_16146 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 1.9e-105 386.3 274 66.1
C03p35880 Brassica napus HOM05D005292 ORTHO05D006473 2.5e-105 386.0 276 64.5
BolC3t15896H Brassica oleracea HOM05D005292 ORTHO05D006473 2.5e-105 386.0 276 64.5
Gohir.D11G020100 Gossypium hirsutum HOM05D005292 ORTHO05D006473 3.3e-105 385.6 274 65.7
HanXRQChr02g0046251 Helianthus annuus HOM05D005292 ORTHO05D006473 7.4e-105 384.4 274 64.2
ECA233G3282 Erigeron canadensis HOM05D005292 ORTHO05D006473 2.1e-104 382.9 274 63.9
Zm00001eb026990 Zea mays HOM05D005292 ORTHO05D006473 3.7e-104 382.1 270 64.8
Gorai.008G239300 Gossypium raimondii HOM05D005292 ORTHO05D006473 4.8e-104 381.7 298 60.7
HanXRQChr07g0188671 Helianthus annuus HOM05D005292 ORTHO05D006473 1.1e-103 380.6 274 63.9
Gohir.A12G220700 Gossypium hirsutum HOM05D005292 ORTHO05D006473 6.9e-103 377.9 285 62.5
unitig_744.g24320 Utricularia gibba HOM05D005292 ORTHO05D006473 6.9e-103 377.9 295 59.7
SalBow1G6483 Salvia bowleyana HOM05D005292 ORTHO05D006473 1.2e-102 377.1 295 60.0
SGA_v2.0_scaffold120G32820 Striga asiatica HOM05D005292 ORTHO05D006473 2.0e-102 376.3 298 60.4
Aa31LG9G10310 Aethionema arabicum HOM05D005292 ORTHO05D006473 2.6e-102 375.9 299 59.2
Ah.12g058260 Amaranthus hybridus HOM05D005292 ORTHO05D006473 3.4e-102 375.6 306 58.2
Ah.02g116220 Amaranthus hybridus HOM05D005292 ORTHO05D006473 1.0e-101 374.0 262 63.7
CDE11G0205 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 1.7e-101 373.2 255 67.5
AUR62017394 Chenopodium quinoa HOM05D005292 ORTHO05D006473 1.7e-101 373.2 257 65.8
HPP92_014608 Vanilla planifolia HOM05D005292 ORTHO05D006473 1.4e-100 370.2 251 67.7
vmacro14043 Vaccinium macrocarpon HOM05D005292 ORTHO05D006473 4.2e-100 368.6 256 66.8
ClCG01G003660 Citrullus lanatus HOM05D005292 ORTHO05D006473 5.1e-98 361.7 288 60.4
Lsat_1_v5_gn_6_9841 Lactuca sativa HOM05D005292 ORTHO05D006473 1.5e-97 360.1 260 62.7
Sabra01G0090700 Salix brachista HOM05D005292 ORTHO05D006473 1.6e-96 356.7 370 49.2
Dinv39082 Davidia involucrata HOM05D005292 ORTHO05D006473 1.1e-92 344.0 274 58.4
Nn4g26373 Nelumbo nucifera HOM05D005292 ORTHO05D006473 3.2e-92 342.4 274 57.7
Haze_08610 Corylus avellana HOM05D005292 ORTHO05D006473 1.4e-90 337.0 344 50.6
TWI15G0397 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 3.9e-90 335.5 274 59.5
FvH4_5g00640 Fragaria vesca HOM05D005292 ORTHO05D006473 9.1e-87 324.3 214 70.6
Sabra03G0079600 Salix brachista HOM05D005292 ORTHO05D006473 9.7e-81 304.3 214 64.5
Rhsim07G0101700 Rhododendron simsii HOM05D005292 ORTHO05D006473 2.6e-78 296.2 231 58.9
TAR629G1108 Trochodendron aralioides HOM05D005292 ORTHO05D006473 8.2e-72 274.6 179 64.8
Duzib205G1434 Durio zibethinus HOM05D005292 ORTHO05D006473 1.6e-70 270.4 191 68.6
Oeu022319.3 Olea europaea HOM05D005292 ORTHO05D006473 2.4e-63 246.5 283 49.5
Actinidia14462 Actinidia chinensis HOM05D005292 ORTHO05D006473 2.7e-59 233.0 274 45.3
Aa31LG11G5120 Aethionema arabicum HOM05D005292 ORTHO05D006473 2.3e-50 203.4 143 61.5
Dinv37766 Davidia involucrata HOM05D005292 ORTHO05D006473 5.7e-49 198.7 136 69.1
MD06G1074900 Malus domestica HOM05D005292 ORTHO05D006473 1.4e-47 194.1 140 59.3
SEGI_25328 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 1.2e-35 154.5 93 73.1
Lsat_1_v5_gn_2_99060 Lactuca sativa HOM05D005292 ORTHO05D006473 4.9e-32 142.5 120 60.0
Lsat_1_v5_gn_8_156781 Lactuca sativa HOM05D005292 ORTHO05D006473 1.1e-31 141.4 189 42.9
MELO3C005579.2 Cucumis melo HOM05D005292 ORTHO05D006473 3.2e-31 139.8 97 70.1
SEGI_08273 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 4.7e-27 125.9 83 73.5
Lsat_1_v5_gn_8_99640 Lactuca sativa HOM05D005292 ORTHO05D006473 2.9e-24 116.7 161 40.4
Lsat_1_v5_gn_8_88300 Lactuca sativa HOM05D005292 ORTHO05D006473 2.4e-23 113.6 186 33.9
MD06G1074800 Malus domestica HOM05D005292 ORTHO05D006473 6.6e-21 105.5 72 70.8
TAR636G3691 Trochodendron aralioides HOM05D005292 ORTHO05D006473 4.3e-20 102.8 62 75.8
SEGI_15988 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 1.1e-18 98.2 65 69.2
TWI81G0363 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 1.1e-15 88.2 70 58.6
Glyma.05G052200 Glycine max HOM05D005292 ORTHO05D006473 1.4e-15 87.8 72 61.1
Cc08_g13200 Coffea canephora HOM05D005292 ORTHO05D006473 3.2e-15 86.7 61 59.0
CDE11G1060 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 5.4e-15 85.9 60 56.7
vmacro17465 Vaccinium macrocarpon HOM05D002883 ORTHO05D003116 3.4e-09 66.6 48 58.3
Eucgr.C02046 Eucalyptus grandis HOM05D005292 ORTHO05D006473 3.8e-08 63.2 48 56.2


User provided reference genes

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