Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO209G0005 Selaginella moellendorffii HOM05D011042 ORTHO05D004127 1.3e-282 975.7 495 100.0
SMO200G0200 Selaginella moellendorffii HOM05D011042 ORTHO05D004127 2.8e-264 914.8 521 90.8
SMO200G0190 Selaginella moellendorffii HOM05D011042 ORTHO05D377756 3.7e-261 904.4 521 90.2
SMO200G0176 Selaginella moellendorffii HOM05D011042 ORTHO05D374215 1.2e-256 889.4 544 85.8
SMO337G0046 Selaginella moellendorffii HOM05D011042 ORTHO05D004127 4.6e-227 791.2 426 94.6
SMO356G0254 Selaginella moellendorffii HOM05D011042 ORTHO05D004127 2.6e-198 695.7 530 71.3
SMO146G0231 Selaginella moellendorffii HOM05D011042 ORTHO05D004127 2.0e-193 679.5 494 74.5
SMO351G0063 Selaginella moellendorffii HOM05D011042 ORTHO05D004127 2.6e-169 599.4 471 67.1
SMO111G0065 Selaginella moellendorffii HOM05D011042 ORTHO05D004127 2.1e-150 536.6 465 61.7
SMO173G0013 Selaginella moellendorffii HOM05D011042 ORTHO05D373856 5.6e-148 528.5 528 59.1
SMO173G0046 Selaginella moellendorffii HOM05D011042 ORTHO05D375473 7.6e-145 518.1 352 76.7
SMO173G0062 Selaginella moellendorffii HOM05D011042 ORTHO05D377078 9.6e-132 474.6 481 59.9
SMO146G0195 Selaginella moellendorffii HOM05D011042 ORTHO05D379290 5.5e-95 352.4 401 54.1
SMO170G0009 Selaginella moellendorffii HOM05D011042 ORTHO05D374791 3.0e-77 293.5 483 46.2
SMO141G0164 Selaginella moellendorffii HOM05D011042 ORTHO05D374707 4.9e-51 206.5 314 47.8
SMO356G0492 Selaginella moellendorffii HOM05D011042 ORTHO05D375238 1.4e-45 188.3 397 38.3
SMO356G0441 Selaginella moellendorffii HOM05D011042 ORTHO05D377317 4.0e-37 160.2 223 47.5
SMO141G0289 Selaginella moellendorffii HOM05D003873 ORTHO05D004127 5.4e-18 96.7 187 34.8
Pp3c4_24790 Physcomitrium patens HOM05D003873 ORTHO05D004127 7.8e-17 92.8 193 30.1
Pp3c13_3890 Physcomitrium patens HOM05D003873 ORTHO05D004127 1.7e-16 91.7 175 33.1
Prupe.2G262000 Prunus persica HOM05D003873 ORTHO05D004127 1.9e-15 88.2 181 32.0
CBR_g23787 Chara braunii HOM05D003873 ORTHO05D004127 4.3e-15 87.0 174 32.2
RcHm_v2.0_Chr1g0371921 Rosa chinensis HOM05D003873 ORTHO05D004127 5.6e-15 86.7 174 31.6
SMO013G0025 Selaginella moellendorffii HOM05D011042 ORTHO05D378378 5.6e-15 86.7 166 40.4
ECA233G5425 Erigeron canadensis HOM05D003873 ORTHO05D004127 7.3e-15 86.3 178 31.5
Duzib114G0555 Durio zibethinus HOM05D003873 ORTHO05D004127 1.6e-14 85.1 170 31.2
Thecc.10G182200 Theobroma cacao HOM05D003873 ORTHO05D004127 2.1e-14 84.7 172 30.8
COL.COLO4_19435 Corchorus olitorius HOM05D003873 ORTHO05D004127 4.8e-14 83.6 169 31.4
MD01G1164200 Malus domestica HOM05D003873 ORTHO05D004127 4.8e-14 83.6 180 32.2
GSVIVG01032680001 Vitis vinifera HOM05D003873 ORTHO05D004127 4.8e-14 83.6 176 33.5
Cfa001222 Carpinus fangiana HOM05D003873 ORTHO05D004127 8.1e-14 82.8 174 31.6
Dinv34475 Davidia involucrata HOM05D003873 ORTHO05D004127 1.1e-13 82.4 176 32.4
QL08p064588 Quercus lobata HOM05D003873 ORTHO05D004127 1.1e-13 82.4 174 32.2
Rhsim09G0185200 Rhododendron simsii HOM05D003873 ORTHO05D004127 1.4e-13 82.0 181 32.0
SHI30175 Sapria himalayana HOM05D003873 ORTHO05D004127 1.8e-13 81.6 195 30.3
Potri.013G092700 Populus trichocarpa HOM05D003873 ORTHO05D004127 2.4e-13 81.3 179 31.3
SMO170G0066 Selaginella moellendorffii HOM05D003873 ORTHO05D004127 3.1e-13 80.9 175 30.3
Hma1.2p1_0292F.1_g115890 Hydrangea macrophylla HOM05D003873 ORTHO05D004127 4.0e-13 80.5 180 32.2
Hma1.2p1_0292F.1_g115910 Hydrangea macrophylla HOM05D003873 ORTHO05D004127 4.0e-13 80.5 176 31.8
Mapoly0093s0078 Marchantia polymorpha HOM05D003873 ORTHO05D004127 4.0e-13 80.5 174 32.2
SMO119G0134 Selaginella moellendorffii HOM05D003873 ORTHO05D004127 4.0e-13 80.5 179 33.0
arahy.Tifrunner.gnm1.ann1.I2EQP5 Arachis hypogaea HOM05D003873 ORTHO05D004127 5.3e-13 80.1 174 32.2
HanXRQChr17g0560751 Helianthus annuus HOM05D003873 ORTHO05D004127 5.3e-13 80.1 169 30.8
Cc02_g05430 Coffea canephora HOM05D003873 ORTHO05D004127 6.9e-13 79.7 182 30.8
Medtr1g007640 Medicago truncatula HOM05D003873 ORTHO05D004127 6.9e-13 79.7 176 31.2
Phvul.001G074800 Phaseolus vulgaris HOM05D003873 ORTHO05D004127 6.9e-13 79.7 180 31.1
TWI09G0384 Tripterygium wilfordii HOM05D003873 ORTHO05D004127 6.9e-13 79.7 176 31.8
vmacro09968 Vaccinium macrocarpon HOM05D003873 ORTHO05D004127 6.9e-13 79.7 149 34.9
TPR.G24518 Trifolium pratense HOM05D003873 ORTHO05D004127 9.0e-13 79.3 176 31.2
Duzib128G1260 Durio zibethinus HOM05D003873 ORTHO05D004127 1.2e-12 79.0 169 31.4
Eucgr.J00121 Eucalyptus grandis HOM05D003873 ORTHO05D004127 1.2e-12 79.0 177 31.6
Gohir.A13G006800 Gossypium hirsutum HOM05D003873 ORTHO05D004127 1.2e-12 79.0 168 31.0
Gohir.D13G007000 Gossypium hirsutum HOM05D003873 ORTHO05D004127 1.2e-12 79.0 168 31.0
Gorai.013G007200 Gossypium raimondii HOM05D003873 ORTHO05D004127 1.2e-12 79.0 168 31.0
Psat6g035920 Pisum sativum HOM05D003873 ORTHO05D004127 1.2e-12 79.0 176 30.1
SMO198G0098 Selaginella moellendorffii HOM05D003873 ORTHO05D004127 1.2e-12 79.0 229 30.1
Solyc05g052260.3 Solanum lycopersicum HOM05D003873 ORTHO05D004127 1.2e-12 79.0 173 31.2
unitig_747.g21397 Utricularia gibba HOM05D003873 ORTHO05D004127 1.2e-12 79.0 177 31.1
arahy.Tifrunner.gnm1.ann1.26CUCK Arachis hypogaea HOM05D003873 ORTHO05D004127 1.5e-12 78.6 170 31.8
BolC4t28343H Brassica oleracea HOM05D000114 ORTHO05D004127 1.5e-12 78.6 213 28.2
Lsat_1_v5_gn_9_122981 Lactuca sativa HOM05D003873 ORTHO05D004127 1.5e-12 78.6 175 29.7
Manes.07G140600 Manihot esculenta HOM05D003873 ORTHO05D004127 1.5e-12 78.6 169 32.0
Nitab4.5_0002279g0070 Nicotiana tabacum HOM05D003873 ORTHO05D004127 1.5e-12 78.6 176 31.8
THA.LOC104824360 Tarenaya hassleriana HOM05D003873 ORTHO05D004127 2.0e-12 78.2 169 32.0
AL4G38460 Arabidopsis lyrata HOM05D003873 ORTHO05D004127 2.6e-12 77.8 169 32.0
A05p01810 Brassica napus HOM05D003873 ORTHO05D004127 2.6e-12 77.8 169 32.0
CANSAT56G3412 Cannabis sativa HOM05D003873 ORTHO05D004127 2.6e-12 77.8 181 30.4
CAN.G203.49 Capsicum annuum HOM05D003873 ORTHO05D004127 2.6e-12 77.8 171 31.6
Nitab4.5_0000375g0180 Nicotiana tabacum HOM05D003873 ORTHO05D004127 2.6e-12 77.8 176 31.8
Thecc.10G182600 Theobroma cacao HOM05D003873 ORTHO05D004127 2.6e-12 77.8 169 30.2
Carub.0004s2288 Capsella rubella HOM05D003873 ORTHO05D004127 3.4e-12 77.4 169 31.4
CiPaw.02G198500 Carya illinoinensis HOM05D003873 ORTHO05D004127 3.4e-12 77.4 177 32.2
PGR044G2565 Punica granatum HOM05D003873 ORTHO05D004127 4.5e-12 77.0 169 30.8
Sp4g22920 Schrenkiella parvula HOM05D003873 ORTHO05D004127 4.5e-12 77.0 169 32.0
SMO119G0485 Selaginella moellendorffii HOM05D003873 ORTHO05D004127 4.5e-12 77.0 147 34.7
Atru.chr1.2930 Acer truncatum HOM05D003873 ORTHO05D004127 5.8e-12 76.6 175 30.3
AT2G40600 Arabidopsis thaliana HOM05D003873 ORTHO05D004127 5.8e-12 76.6 169 32.0
BcaC02g12725 Brassica carinata HOM05D003873 ORTHO05D004127 5.8e-12 76.6 169 32.5
Lalb_Chr08g0239001 Lupinus albus HOM05D003873 ORTHO05D004127 5.8e-12 76.6 181 30.4
Peaxi162Scf00167g01217 Petunia axillaris HOM05D003873 ORTHO05D004127 5.8e-12 76.6 176 30.7
PGSC0003DMG400011653 Solanum tuberosum HOM05D003873 ORTHO05D004127 5.8e-12 76.6 173 30.1
BraA04t18560Z Brassica rapa HOM05D000114 ORTHO05D004127 7.6e-12 76.3 169 32.0
MELO3C020142.2 Cucumis melo HOM05D003873 ORTHO05D004127 7.6e-12 76.3 177 31.6
Lsat_1_v5_gn_8_13601 Lactuca sativa HOM05D003873 ORTHO05D004127 7.6e-12 76.3 143 33.6
Lj1g0013289 Lotus japonicus HOM05D003873 ORTHO05D004127 7.6e-12 76.3 177 29.9
SMO141G0106 Selaginella moellendorffii HOM05D003873 ORTHO05D004127 7.6e-12 76.3 175 28.0
arahy.Tifrunner.gnm1.ann1.8SN1W1 Arachis hypogaea HOM05D003873 ORTHO05D004127 9.9e-12 75.9 181 28.7
Sabra13G0064000 Salix brachista HOM05D003873 ORTHO05D004127 9.9e-12 75.9 169 31.4
arahy.Tifrunner.gnm1.ann1.HNCJ3C Arachis hypogaea HOM05D003873 ORTHO05D004127 1.3e-11 75.5 181 28.7
A04p31040 Brassica napus HOM05D000114 ORTHO05D004127 1.3e-11 75.5 169 32.0
CARHR135690 Cardamine hirsuta HOM05D003873 ORTHO05D004127 1.3e-11 75.5 169 31.4
CsaV3_5G010890 Cucumis sativus L. HOM05D003873 ORTHO05D004127 1.3e-11 75.5 177 31.6
PSO210G0819 Papaver somniferum HOM05D000620 ORTHO05D000537 1.3e-11 75.5 184 29.3
Hund15823 Selenicereus undatus HOM05D003873 ORTHO05D004127 1.3e-11 75.5 220 26.8
BcaC02g07324 Brassica carinata HOM05D000114 ORTHO05D004127 1.7e-11 75.1 169 32.0
C04p68430 Brassica napus HOM05D000114 ORTHO05D004127 1.7e-11 75.1 169 32.0
TAR369G0800 Trochodendron aralioides HOM05D003873 ORTHO05D004127 1.7e-11 75.1 169 30.2
BcaB06g29154 Brassica carinata HOM05D003873 ORTHO05D004127 2.2e-11 74.7 169 32.0
C04p02110 Brassica napus HOM05D003873 ORTHO05D004127 2.2e-11 74.7 169 32.0
BolC4t21859H Brassica oleracea HOM05D003873 ORTHO05D004127 2.2e-11 74.7 169 32.0
BraA05t19179Z Brassica rapa HOM05D003873 ORTHO05D004127 2.2e-11 74.7 177 30.5
Atru.BG.255.p Acer truncatum HOM05D003873 ORTHO05D004127 2.9e-11 74.3 168 29.2
Ciclev10002574m.g Citrus clementina HOM05D003873 ORTHO05D004127 3.8e-11 73.9 185 30.8
PSO017G6038 Papaver somniferum HOM05D003873 ORTHO05D004127 3.8e-11 73.9 190 30.5
CDE06G1522 Ceratophyllum demersum HOM05D003873 ORTHO05D004127 4.9e-11 73.6 180 29.4
AUR62030624 Chenopodium quinoa HOM05D003873 ORTHO05D004127 4.9e-11 73.6 180 28.9
Glyma.14G145000 Glycine max HOM05D003873 ORTHO05D004127 4.9e-11 73.6 173 30.1
AUR62024920 Chenopodium quinoa HOM05D003873 ORTHO05D004127 6.4e-11 73.2 180 29.4
FvH4_7g25700 Fragaria vesca HOM05D003873 ORTHO05D004127 6.4e-11 73.2 151 29.8
FAN03G1281 Fragaria x ananassa HOM05D003873 ORTHO05D004127 6.4e-11 73.2 151 29.8
Sed0001367 Sechium edule HOM05D003873 ORTHO05D004127 6.4e-11 73.2 177 29.9
Actinidia31621 Actinidia chinensis HOM05D003873 ORTHO05D004127 8.4e-11 72.8 181 29.3
FAN06G3214 Fragaria x ananassa HOM05D000009 ORTHO05D000008 8.4e-11 72.8 151 29.1
MBI03_g22825_MAGBIO Magnolia biondii HOM05D003873 ORTHO05D004127 1.1e-10 72.4 168 31.0
ATR1127G039 Amborella trichopoda HOM05D003873 ORTHO05D004127 1.4e-10 72.0 149 31.5
AL4G38470 Arabidopsis lyrata HOM05D003873 ORTHO05D004127 1.4e-10 72.0 190 30.0
CSS0018140 Camellia sinensis var. sinensis HOM05D003873 ORTHO05D004127 1.4e-10 72.0 144 32.6
Carub.0004s2289 Capsella rubella HOM05D003873 ORTHO05D004127 1.4e-10 72.0 197 30.5
Ca_12777_v3 Cicer arietinum L. HOM05D003873 ORTHO05D004127 1.4e-10 72.0 149 30.9
Oeu027748.1 Olea europaea HOM05D003873 ORTHO05D004127 1.4e-10 72.0 144 31.2
PSO017G6047 Papaver somniferum HOM05D003873 ORTHO05D004127 1.4e-10 72.0 180 30.0
Thecc.10G182400 Theobroma cacao HOM05D003873 ORTHO05D004127 1.4e-10 72.0 165 30.3
VMungo0647G2356 Vigna mungo HOM05D003873 ORTHO05D004127 1.4e-10 72.0 149 31.5
CARHR135710 Cardamine hirsuta HOM05D003873 ORTHO05D004127 1.9e-10 71.6 169 30.2
PSO210G1471 Papaver somniferum HOM05D000620 ORTHO05D000537 1.9e-10 71.6 172 29.7
PSO384G4386 Papaver somniferum HOM05D003873 ORTHO05D004127 2.4e-10 71.2 190 31.1
SEGI_07333 Sequoiadendron giganteum HOM05D003873 ORTHO05D004127 2.4e-10 71.2 149 32.9
TWI73G0123 Tripterygium wilfordii HOM05D003873 ORTHO05D004127 3.2e-10 70.9 169 30.2
EL10Ac2g02628 Beta vulgaris HOM05D003873 ORTHO05D004127 4.2e-10 70.5 171 30.4
Thhalv10017560m.g Eutrema salsugineum HOM05D003873 ORTHO05D004127 4.2e-10 70.5 180 30.6
Sc11g0005790 Simmondsia chinensis HOM05D003873 ORTHO05D004127 7.1e-10 69.7 169 30.8
TPR.G3290 Trifolium pratense HOM05D003873 ORTHO05D004127 7.1e-10 69.7 172 29.1
HPP92_011975 Vanilla planifolia HOM05D003873 ORTHO05D004127 7.1e-10 69.7 169 30.2
Aqoxy4G02390 Aquilegia oxysepala HOM05D003873 ORTHO05D004127 9.3e-10 69.3 169 29.6
Cre07.g336850 Chlamydomonas reinhardtii HOM05D003873 ORTHO05D004127 9.3e-10 69.3 106 37.7
PSO017G3604 Papaver somniferum HOM05D003873 ORTHO05D004127 9.3e-10 69.3 188 31.4
PSO170G1346 Papaver somniferum HOM05D003873 ORTHO05D004127 1.2e-09 68.9 188 29.3
Lj1C966G3 Lonicera japonica HOM05D003873 ORTHO05D004127 1.6e-09 68.6 103 36.9
PSO210G0156 Papaver somniferum HOM05D000620 ORTHO05D000537 1.6e-09 68.6 174 29.9
Sp4g22930 Schrenkiella parvula HOM05D003873 ORTHO05D004127 1.6e-09 68.6 190 30.0
Atru.chr3.3508 Acer truncatum HOM05D003873 ORTHO05D004127 2.1e-09 68.2 145 31.0
Atru.chr3.3515 Acer truncatum HOM05D003873 ORTHO05D004127 2.1e-09 68.2 145 31.0
PSO210G5103 Papaver somniferum HOM05D000620 ORTHO05D000537 2.1e-09 68.2 174 29.9
Aa31LG3G1520 Aethionema arabicum HOM05D003873 ORTHO05D004127 2.7e-09 67.8 97 36.1
Lj5g0010993 Lotus japonicus HOM05D003873 ORTHO05D004127 3.5e-09 67.4 145 31.0
Nn2g10324 Nelumbo nucifera HOM05D003873 ORTHO05D004127 4.6e-09 67.0 169 30.8
Sopen05g030800 Solanum pennellii HOM05D003873 ORTHO05D004127 4.6e-09 67.0 154 30.5
Aqoxy4G02389 Aquilegia oxysepala HOM05D003873 ORTHO05D004127 6.0e-09 66.6 176 29.0
Manes.10G000800 Manihot esculenta HOM05D003873 ORTHO05D004127 6.0e-09 66.6 168 28.6
Os03g0336500 Oryza sativa ssp. japonica HOM05D003873 ORTHO05D004127 7.9e-09 66.2 180 28.9
PSO384G3509 Papaver somniferum HOM05D003873 ORTHO05D004127 1.3e-08 65.5 169 29.0
SMO147G0042 Selaginella moellendorffii HOM05D003873 ORTHO05D004127 1.3e-08 65.5 169 28.4
Psat6g036760 Pisum sativum HOM05D003873 ORTHO05D004127 2.3e-08 64.7 103 35.9
Zm00001eb016110 Zea mays HOM05D003873 ORTHO05D004127 3.0e-08 64.3 96 38.5
PSO017G0702 Papaver somniferum HOM05D003873 ORTHO05D004127 3.9e-08 63.9 169 28.4
SMO198G0073 Selaginella moellendorffii HOM05D003873 ORTHO05D004127 3.9e-08 63.9 149 27.5
SMO170G0014 Selaginella moellendorffii HOM05D003873 ORTHO05D004127 6.7e-08 63.2 160 31.2
Oeu004079.1 Olea europaea HOM05D003873 ORTHO05D004127 1.5e-07 62.0 87 35.6
Ciclev10002586m.g Citrus clementina HOM05D003873 ORTHO05D004127 5.6e-07 60.1 167 25.1
SalBow3G4343 Salvia bowleyana HOM05D003873 ORTHO05D004127 7.4e-07 59.7 70 40.0
Hma1.2p1_0292F.1_g115900 Hydrangea macrophylla HOM05D003873 ORTHO05D004127 9.6e-07 59.3 126 31.0
SMO145G0080 Selaginella moellendorffii HOM05D003873 ORTHO05D004127 1.6e-06 58.5 228 23.7
SMO353G0256 Selaginella moellendorffii HOM05D003873 ORTHO05D004127 1.6e-06 58.5 153 23.5
SMO171G0118 Selaginella moellendorffii HOM05D003873 ORTHO05D004127 3.7e-06 57.4 156 23.1
SMO196G0079 Selaginella moellendorffii HOM05D003873 ORTHO05D004127 8.1e-06 56.2 211 23.7


User provided reference genes

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