Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 2.0e-124 449.1 228 100.0
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 1.3e-46 190.7 185 56.8
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 4.8e-46 188.7 186 51.6
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 4.8e-46 188.7 197 55.8
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 6.3e-46 188.3 198 53.5
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 6.3e-46 188.3 195 54.4
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 6.3e-46 188.3 197 53.3
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 1.4e-45 187.2 186 54.8
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 1.8e-45 186.8 187 55.1
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 1.8e-45 186.8 187 55.1
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 2.4e-45 186.4 207 52.2
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 2.4e-45 186.4 186 57.5
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 4.1e-45 185.7 186 57.5
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 5.4e-45 185.3 186 53.2
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 5.4e-45 185.3 186 54.8
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 7.0e-45 184.9 186 53.8
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 9.1e-45 184.5 185 56.2
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 1.2e-44 184.1 197 52.3
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 2.0e-44 183.3 186 52.7
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 2.0e-44 183.3 186 53.2
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 2.0e-44 183.3 189 55.6
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 2.0e-44 183.3 184 52.2
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 3.5e-44 182.6 189 55.0
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 4.5e-44 182.2 208 50.0
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 4.5e-44 182.2 188 53.2
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 4.5e-44 182.2 186 52.2
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 7.7e-44 181.4 208 50.0
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 7.7e-44 181.4 185 55.7
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 7.7e-44 181.4 188 52.7
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 7.7e-44 181.4 209 50.2
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 1.0e-43 181.0 208 49.5
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 1.0e-43 181.0 186 53.2
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 1.0e-43 181.0 185 55.7
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 1.0e-43 181.0 197 50.3
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 1.0e-43 181.0 186 53.2
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 1.3e-43 180.6 185 55.7
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 1.3e-43 180.6 186 52.2
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 1.7e-43 180.3 186 52.7
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 2.2e-43 179.9 185 52.4
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 2.9e-43 179.5 186 51.1
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 2.9e-43 179.5 186 52.7
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 2.9e-43 179.5 188 51.6
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 3.8e-43 179.1 187 54.5
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 3.8e-43 179.1 187 54.5
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 3.8e-43 179.1 184 55.4
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 3.8e-43 179.1 187 54.5
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 3.8e-43 179.1 187 54.5
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 3.8e-43 179.1 187 54.5
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 5.0e-43 178.7 188 52.7
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 6.5e-43 178.3 186 53.8
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 6.5e-43 178.3 186 53.2
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 6.5e-43 178.3 208 49.5
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 6.5e-43 178.3 186 52.7
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 8.5e-43 177.9 187 53.5
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 8.5e-43 177.9 188 51.1
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 1.1e-42 177.6 188 52.1
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 1.1e-42 177.6 189 52.9
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 1.5e-42 177.2 187 54.0
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 1.5e-42 177.2 186 51.6
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.9e-42 176.8 187 52.9
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 2.5e-42 176.4 186 52.2
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 2.5e-42 176.4 185 53.5
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 2.5e-42 176.4 186 52.7
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 2.5e-42 176.4 185 52.4
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 2.5e-42 176.4 186 52.7
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 3.2e-42 176.0 199 51.3
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 4.2e-42 175.6 185 54.1
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 4.2e-42 175.6 185 51.9
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 4.2e-42 175.6 186 52.7
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 7.2e-42 174.9 187 52.9
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 7.2e-42 174.9 185 54.6
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 9.4e-42 174.5 185 51.4
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 1.6e-41 173.7 185 51.9
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 2.1e-41 173.3 185 53.0
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 2.7e-41 172.9 188 51.1
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 2.7e-41 172.9 188 50.5
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 2.7e-41 172.9 186 51.1
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 2.7e-41 172.9 185 53.0
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 3.6e-41 172.6 187 51.3
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 3.6e-41 172.6 185 54.1
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 4.7e-41 172.2 188 53.2
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 4.7e-41 172.2 184 53.3
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 1.4e-40 170.6 189 53.4
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 1.4e-40 170.6 189 53.4
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.4e-40 170.6 185 52.4
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 1.8e-40 170.2 206 51.5
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 2.3e-40 169.9 188 52.7
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 2.3e-40 169.9 188 52.7
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 6.8e-40 168.3 188 52.1
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 8.8e-40 167.9 202 49.5
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 1.2e-39 167.5 187 52.4
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 1.2e-39 167.5 203 51.2
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 1.5e-39 167.2 185 51.4
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 1.5e-39 167.2 188 52.1
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 2.0e-39 166.8 192 51.0
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 4.4e-39 165.6 188 51.6
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 5.7e-39 165.2 212 49.5
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 5.7e-39 165.2 187 50.3
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 7.5e-39 164.9 186 52.2
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 9.8e-39 164.5 181 52.5
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 1.3e-38 164.1 203 52.2
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 2.2e-38 163.3 186 48.9
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 2.8e-38 162.9 195 50.8
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 3.7e-38 162.5 209 44.0
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 3.7e-38 162.5 201 44.8
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 4.9e-38 162.2 186 50.5
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 6.3e-38 161.8 211 47.4
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 6.3e-38 161.8 211 47.4
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 1.4e-37 160.6 192 47.9
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 1.8e-37 160.2 184 48.9
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 2.4e-37 159.8 207 47.8
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 3.1e-37 159.5 198 50.0
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 5.4e-37 158.7 184 48.4
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 1.6e-36 157.1 198 49.0
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 3.5e-36 156.0 161 54.7
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 1.7e-35 153.7 142 58.5
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 3.8e-35 152.5 185 48.6
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 3.8e-35 152.5 187 46.0
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 1.1e-34 151.0 195 46.7
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 1.1e-34 151.0 184 49.5
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 1.9e-34 150.2 206 42.2
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 2.5e-34 149.8 186 43.0
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 3.3e-34 149.4 186 50.0
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 4.2e-34 149.1 130 60.8
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 5.5e-34 148.7 130 60.0
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 5.5e-34 148.7 130 60.0
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 5.5e-34 148.7 130 60.0
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 9.5e-34 147.9 130 60.8
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 1.2e-33 147.5 201 45.8
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 2.8e-33 146.4 130 60.8
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 3.6e-33 146.0 195 45.6
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 6.1e-33 145.2 130 57.7
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 6.1e-33 145.2 129 58.9
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 4.0e-32 142.5 186 45.7
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 1.2e-31 141.0 189 47.6
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 2.0e-31 140.2 130 56.9
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 1.1e-29 134.4 182 44.5
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 6.6e-27 125.2 117 57.3
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 8.6e-27 124.8 187 43.3
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 1.2e-25 120.9 143 49.0
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 2.1e-25 120.2 112 56.2
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 6.1e-25 118.6 187 39.6
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 4.4e-23 112.5 166 44.6
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 9.8e-23 111.3 181 42.0
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 1.3e-22 110.9 193 42.0
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 1.1e-21 107.8 107 54.2
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 1.6e-20 104.0 187 38.0
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 3.9e-19 99.4 84 63.1
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 2.6e-15 86.7 93 49.5
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 3.7e-14 82.8 93 49.5
SMO308G0081 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 2.3e-11 73.6 163 37.4
CBR_g35002 Chara braunii HOM05D000321 ORTHO05D000204 3.3e-10 69.7 65 55.4
Zm00001eb095200 Zea mays HOM05D004453 ORTHO05D005375 7.3e-10 68.6 80 47.5
Oeu060910.1 Olea europaea HOM05D004453 ORTHO05D005375 2.3e-08 63.5 82 43.9
CBR_g37640 Chara braunii HOM05D004453 ORTHO05D005375 2.0e-07 60.5 139 33.1


User provided reference genes

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