Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO203G0070 Selaginella moellendorffii HOM05D010048 ORTHO05D012120 5.5e-98 361.3 232 100.0
SMO331G0053 Selaginella moellendorffii HOM05D010048 ORTHO05D012120 4.5e-39 165.6 300 54.3
SMO139G0060 Selaginella moellendorffii HOM05D010048 ORTHO05D012120 7.9e-28 128.3 382 44.5
SMO367G0545 Selaginella moellendorffii HOM05D010048 ORTHO05D012120 3.0e-27 126.3 102 60.8
SMO145G0292 Selaginella moellendorffii HOM05D010048 ORTHO05D012120 4.8e-25 119.0 338 47.3
SMO281G0004 Selaginella moellendorffii HOM05D010048 ORTHO05D012120 1.7e-22 110.5 104 48.1
SMO367G0115 Selaginella moellendorffii HOM05D010048 ORTHO05D012120 1.4e-19 100.9 381 39.1
SMO043G0001 Selaginella moellendorffii HOM05D010048 ORTHO05D012120 1.8e-19 100.5 381 39.1
SMO367G0564 Selaginella moellendorffii HOM05D010048 ORTHO05D012120 4.3e-18 95.9 381 38.6
SMO343G0032 Selaginella moellendorffii HOM05D010048 ORTHO05D012120 1.1e-16 91.3 73 60.3
SMO163G0047 Selaginella moellendorffii HOM05D010048 ORTHO05D012120 3.4e-15 86.3 104 44.2
SMO356G0251 Selaginella moellendorffii HOM05D010048 ORTHO05D011302 1.1e-13 81.3 101 39.6
SMO240G0014 Selaginella moellendorffii HOM05D010048 ORTHO05D012120 1.4e-13 80.9 152 32.9
SMO351G0248 Selaginella moellendorffii HOM05D058351 ORTHO05D012120 2.1e-12 77.0 82 41.5
SMO358G0180 Selaginella moellendorffii HOM05D010048 ORTHO05D012120 2.1e-12 77.0 82 48.8
SMO327G0042 Selaginella moellendorffii HOM05D010048 ORTHO05D012120 3.9e-11 72.8 32 100.0
Os09g0293500 Oryza sativa ssp. japonica HOM05D000094 ORTHO05D001414 8.8e-11 71.6 97 37.1
Lj4A539T58 Lonicera japonica HOM05D012045 ORTHO05D012344 7.4e-10 68.6 77 46.8
Medtr6g040230 Medicago truncatula HOM05D001327 ORTHO05D002270 7.4e-10 68.6 85 41.2
SGA_v2.0_scaffold269G46247 Striga asiatica HOM05D000029 ORTHO05D001395 1.7e-09 67.4 108 38.0
Gohir.A04G108700 Gossypium hirsutum HOM05D000311 ORTHO05D000183 3.7e-09 66.2 232 48.7
SMO364G0562 Selaginella moellendorffii HOM05D010048 ORTHO05D012120 3.7e-09 66.2 68 52.9
MD10G1277600 Malus domestica HOM05D000021 ORTHO05D000010 4.8e-09 65.9 95 37.9
COL.COLO4_27016 Corchorus olitorius HOM05D000021 ORTHO05D000010 1.4e-08 64.3 64 43.8
Eucgr.G01972 Eucalyptus grandis HOM05D000071 ORTHO05D000029 1.4e-08 64.3 87 36.8
CAN.G411.75 Capsicum annuum HOM05D000021 ORTHO05D000010 1.8e-08 63.9 102 42.2
Manes.16G073300 Manihot esculenta HOM05D000029 ORTHO05D001072 1.8e-08 63.9 95 40.0
PGSC0003DMG400028473 Solanum tuberosum HOM05D000021 ORTHO05D000010 1.8e-08 63.9 78 44.9
CAN.G866.1 Capsicum annuum HOM05D000021 ORTHO05D000010 3.1e-08 63.2 103 36.9
Cfa012628 Carpinus fangiana HOM05D000311 ORTHO05D000183 3.1e-08 63.2 154 34.4
Eucgr.E04274 Eucalyptus grandis HOM05D000311 ORTHO05D000183 3.1e-08 63.2 138 34.8
Actinidia26071 Actinidia chinensis HOM05D000029 ORTHO05D001072 4.1e-08 62.8 86 44.2
Peaxi162Scf00193g00220 Petunia axillaris HOM05D000021 ORTHO05D000010 4.1e-08 62.8 66 37.9
CAN.G575.10 Capsicum annuum HOM05D000053 ORTHO05D000035 7.0e-08 62.0 155 34.2
Eucgr.F00571 Eucalyptus grandis HOM05D000053 ORTHO05D000035 7.0e-08 62.0 131 32.1
Medtr8g469690 Medicago truncatula HOM05D015984 ORTHO05D015166 7.0e-08 62.0 81 35.8
Prupe.4G063400 Prunus persica HOM05D000021 ORTHO05D000010 7.0e-08 62.0 121 35.5
SMO197G0112 Selaginella moellendorffii HOM05D010048 ORTHO05D012120 7.0e-08 62.0 67 52.2
GSVIVG01017419001 Vitis vinifera HOM05D000311 ORTHO05D000183 7.0e-08 62.0 143 30.8
Medtr8g470950 Medicago truncatula HOM05D000021 ORTHO05D000010 9.1e-08 61.6 76 36.8
Sed0000247 Sechium edule HOM05D000029 ORTHO05D005879 9.1e-08 61.6 98 38.8
Ciclev10018259m.g Citrus clementina HOM05D000021 ORTHO05D000010 1.5e-07 60.8 123 31.7
Duzib212G0440 Durio zibethinus HOM05D000311 ORTHO05D000183 1.5e-07 60.8 77 37.7
Eucgr.E01447 Eucalyptus grandis HOM05D000053 ORTHO05D000035 1.5e-07 60.8 229 50.7
RcHm_v2.0_Chr7g0213311 Rosa chinensis HOM05D018904 ORTHO05D016947 1.5e-07 60.8 79 38.0
Duzib212G0223 Durio zibethinus HOM05D000311 ORTHO05D000183 2.0e-07 60.5 97 38.1
Nitab4.5_0003736g0010 Nicotiana tabacum HOM05D000021 ORTHO05D000010 2.0e-07 60.5 55 50.9
Eucgr.E04282 Eucalyptus grandis HOM05D000311 ORTHO05D000183 2.6e-07 60.1 193 52.8
Prupe.2G168700 Prunus persica HOM05D000071 ORTHO05D000029 2.6e-07 60.1 128 36.7
TPR.G30040 Trifolium pratense HOM05D000021 ORTHO05D000010 2.6e-07 60.1 64 39.1
TWI34G1776 Tripterygium wilfordii HOM05D000311 ORTHO05D000183 2.6e-07 60.1 83 39.8
Zm00001eb177520 Zea mays HOM05D000094 ORTHO05D001414 2.6e-07 60.1 76 36.8
Cc11_g02190 Coffea canephora HOM05D000021 ORTHO05D000010 3.4e-07 59.7 73 43.8
COL.COLO4_20160 Corchorus olitorius HOM05D000311 ORTHO05D000183 3.4e-07 59.7 103 39.8
Duzib184G0001 Durio zibethinus HOM05D000311 ORTHO05D000183 3.4e-07 59.7 94 39.4
Duzib212G0288 Durio zibethinus HOM05D000053 ORTHO05D000448 3.4e-07 59.7 208 50.5
Duzib212G0447 Durio zibethinus HOM05D000311 ORTHO05D000183 3.4e-07 59.7 97 38.1
Duzib214G0001 Durio zibethinus HOM05D000311 ORTHO05D000183 3.4e-07 59.7 94 39.4
Eucgr.C04068 Eucalyptus grandis HOM05D000311 ORTHO05D000183 3.4e-07 59.7 73 41.1
Lalb_Chr02g0159941 Lupinus albus HOM05D000094 ORTHO05D002904 3.4e-07 59.7 51 56.9
PSO349G0170 Papaver somniferum HOM05D000053 ORTHO05D000448 3.4e-07 59.7 106 40.6
ECA238G2109 Erigeron canadensis HOM05D000021 ORTHO05D000010 4.5e-07 59.3 106 34.0
MD03G1180000 Malus domestica HOM05D000021 ORTHO05D000010 4.5e-07 59.3 77 42.9
Medtr2g016560 Medicago truncatula HOM05D015984 ORTHO05D015166 4.5e-07 59.3 71 40.8
Peaxi162Scf00734g00034 Petunia axillaris HOM05D000021 ORTHO05D000010 4.5e-07 59.3 75 41.3
Potri.005G011600 Populus trichocarpa HOM05D000311 ORTHO05D000183 4.5e-07 59.3 155 31.0
Duzib212G0289 Durio zibethinus HOM05D000311 ORTHO05D000183 5.9e-07 58.9 100 37.0
Medtr2g016590 Medicago truncatula HOM05D000021 ORTHO05D000010 5.9e-07 58.9 69 42.0
Os01g0603500 Oryza sativa ssp. japonica HOM05D000071 ORTHO05D000029 5.9e-07 58.9 137 29.9
RcHm_v2.0_Chr2g0113631 Rosa chinensis HOM05D000021 ORTHO05D000010 5.9e-07 58.9 79 36.7
Duzib212G0932 Durio zibethinus HOM05D000053 ORTHO05D000448 7.7e-07 58.5 205 51.2
Eucgr.E04289 Eucalyptus grandis HOM05D000311 ORTHO05D000183 7.7e-07 58.5 136 31.6
Gohir.D05G343000 Gossypium hirsutum HOM05D000021 ORTHO05D000010 7.7e-07 58.5 70 42.9
Gorai.009G371300 Gossypium raimondii HOM05D000021 ORTHO05D000010 7.7e-07 58.5 54 50.0
Lsat_1_v5_gn_1_29741 Lactuca sativa HOM05D000311 ORTHO05D000183 7.7e-07 58.5 88 40.9
Lsat_1_v5_gn_6_108000 Lactuca sativa HOM05D000029 ORTHO05D005879 7.7e-07 58.5 98 35.7
Medtr8g470970 Medicago truncatula HOM05D000021 ORTHO05D000010 7.7e-07 58.5 57 42.1
Potri.005G007900 Populus trichocarpa HOM05D000311 ORTHO05D000183 7.7e-07 58.5 151 31.8
QL93p0073_1273 Quercus lobata HOM05D000311 ORTHO05D000183 7.7e-07 58.5 157 31.8
AagrBONN_evm.TU.Sc2ySwM_362.1406 Anthoceros agrestis HOM05D012062 ORTHO05D011302 1.0e-06 58.2 139 29.5
Migut.H01425 Erythranthe guttata HOM05D000021 ORTHO05D000010 1.0e-06 58.2 56 48.2
Medtr8g468680 Medicago truncatula HOM05D015984 ORTHO05D015166 1.0e-06 58.2 70 35.7
Oeu056112.2 Olea europaea HOM05D000021 ORTHO05D000010 1.0e-06 58.2 79 39.2
RcHm_v2.0_Chr6g0277691 Rosa chinensis HOM05D000021 ORTHO05D000010 1.0e-06 58.2 94 33.0
SalBow2G1291 Salvia bowleyana HOM05D000029 ORTHO05D005879 1.0e-06 58.2 111 36.9
TPR.G36622 Trifolium pratense HOM05D000071 ORTHO05D000029 1.0e-06 58.2 143 30.1
CAN.G257.124 Capsicum annuum HOM05D000065 ORTHO05D017765 1.3e-06 57.8 65 46.2
Duzib212G0107 Durio zibethinus HOM05D000311 ORTHO05D000183 1.3e-06 57.8 100 37.0
Duzib212G0621 Durio zibethinus HOM05D000311 ORTHO05D000183 1.3e-06 57.8 151 29.1
Duzib212G0774 Durio zibethinus HOM05D000311 ORTHO05D000183 1.3e-06 57.8 94 39.4
Eucgr.C03748 Eucalyptus grandis HOM05D000021 ORTHO05D000010 1.3e-06 57.8 103 36.9
MD05G1298300 Malus domestica HOM05D000021 ORTHO05D000010 1.3e-06 57.8 75 37.3
Prupe.4G213400 Prunus persica HOM05D000021 ORTHO05D000010 1.3e-06 57.8 72 36.1
Thecc.02G158500 Theobroma cacao HOM05D000311 ORTHO05D000183 1.3e-06 57.8 240 48.3
DCAR_011956 Daucus carota HOM05D000132 ORTHO05D000058 1.7e-06 57.4 87 39.1
Eucgr.C04419 Eucalyptus grandis HOM05D000311 ORTHO05D000183 1.7e-06 57.4 76 39.5
HanXRQChr07g0196501 Helianthus annuus HOM05D000021 ORTHO05D000010 1.7e-06 57.4 57 47.4
Lj4P526T16 Lonicera japonica HOM05D012045 ORTHO05D012344 1.7e-06 57.4 77 42.9
Potri.005G013400 Populus trichocarpa HOM05D000311 ORTHO05D000183 1.7e-06 57.4 126 34.1
vmacro03425 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 1.7e-06 57.4 55 47.3
CAN.G1801.8 Capsicum annuum HOM05D000029 ORTHO05D005879 2.2e-06 57.0 107 32.7
CARHR185730 Cardamine hirsuta HOM05D000311 ORTHO05D000183 2.2e-06 57.0 131 31.3
Ciclev10014011m.g Citrus clementina HOM05D000021 ORTHO05D000010 2.2e-06 57.0 79 36.7
Ciclev10030602m.g Citrus clementina HOM05D000021 ORTHO05D000010 2.2e-06 57.0 49 51.0
Dinv44208 Davidia involucrata HOM05D001042 ORTHO05D007836 2.2e-06 57.0 103 35.9
Migut.F01641 Erythranthe guttata HOM05D000053 ORTHO05D000035 2.2e-06 57.0 214 52.3
Eucgr.L01316 Eucalyptus grandis HOM05D000311 ORTHO05D000183 2.2e-06 57.0 101 37.6
FvH4_3g13435 Fragaria vesca HOM05D000071 ORTHO05D000029 2.2e-06 57.0 72 37.5
FAN18G0476 Fragaria x ananassa HOM05D000029 ORTHO05D005879 2.2e-06 57.0 99 37.4
HanXRQChr04g0096831 Helianthus annuus HOM05D000311 ORTHO05D000183 2.2e-06 57.0 98 36.7
HanXRQChr09g0253911 Helianthus annuus HOM05D000029 ORTHO05D005879 2.2e-06 57.0 99 32.3
Nitab4.5_0007564g0010 Nicotiana tabacum HOM05D000021 ORTHO05D000010 2.2e-06 57.0 50 50.0
Nitab4.5_0011824g0010 Nicotiana tabacum HOM05D014506 ORTHO05D017765 2.2e-06 57.0 53 49.1
SalBow6G4549 Salvia bowleyana HOM05D000021 ORTHO05D000010 2.2e-06 57.0 78 42.3
SalBow6G6920 Salvia bowleyana HOM05D000053 ORTHO05D000448 2.2e-06 57.0 218 50.0
Cc09_g06840 Coffea canephora HOM05D018220 ORTHO05D025129 2.9e-06 56.6 93 35.5
Haze_19486 Corylus avellana HOM05D000021 ORTHO05D012344 2.9e-06 56.6 77 40.3
Eucgr.F02778 Eucalyptus grandis HOM05D000053 ORTHO05D000035 2.9e-06 56.6 234 48.3
FvH4_5g33580 Fragaria vesca HOM05D000029 ORTHO05D005879 2.9e-06 56.6 99 37.4
FAN04G1307 Fragaria x ananassa HOM05D000029 ORTHO05D005879 2.9e-06 56.6 99 37.4
FAN08G1497 Fragaria x ananassa HOM05D000029 ORTHO05D005879 2.9e-06 56.6 108 36.1
FAN25G2411 Fragaria x ananassa HOM05D000071 ORTHO05D000029 2.9e-06 56.6 77 40.3
Gohir.D04G148250 Gossypium hirsutum HOM05D000311 ORTHO05D000183 2.9e-06 56.6 191 54.5
HanXRQChr04g0097451 Helianthus annuus HOM05D000311 ORTHO05D000183 2.9e-06 56.6 110 35.5
Lsat_1_v5_gn_4_75740 Lactuca sativa HOM05D007589 ORTHO05D009610 2.9e-06 56.6 77 40.3
Medtr8g469600 Medicago truncatula HOM05D000021 ORTHO05D000010 2.9e-06 56.6 136 33.1
Peaxi162Scf00162g00211 Petunia axillaris HOM05D014506 ORTHO05D017765 2.9e-06 56.6 105 40.0
Haze_16592 Corylus avellana HOM05D000311 ORTHO05D000183 3.8e-06 56.2 75 42.7
Glyma.13G067101 Glycine max HOM05D000094 ORTHO05D002904 3.8e-06 56.2 77 45.5
Manes.06G041900 Manihot esculenta HOM05D000311 ORTHO05D000183 3.8e-06 56.2 77 41.6
Medtr6g040210 Medicago truncatula HOM05D000021 ORTHO05D000010 3.8e-06 56.2 59 39.0
Medtr8g468620 Medicago truncatula HOM05D000021 ORTHO05D000010 3.8e-06 56.2 69 39.1
Nn1g02917 Nelumbo nucifera HOM05D000132 ORTHO05D000058 3.8e-06 56.2 101 32.7
Nitab4.5_0007729g0030 Nicotiana tabacum HOM05D014506 ORTHO05D017765 3.8e-06 56.2 55 47.3
Oeu044547.1 Olea europaea HOM05D003705 ORTHO05D010003 3.8e-06 56.2 56 48.2
Os06g0198900 Oryza sativa ssp. japonica HOM05D000033 ORTHO05D002890 3.8e-06 56.2 113 32.7
Potri.005G013100 Populus trichocarpa HOM05D000311 ORTHO05D000183 3.8e-06 56.2 103 37.9
RcHm_v2.0_Chr5g0059191 Rosa chinensis HOM05D021068 ORTHO05D012344 3.8e-06 56.2 72 38.9
SEGI_35620 Sequoiadendron giganteum HOM05D000029 ORTHO05D002500 3.8e-06 56.2 123 34.1
PGSC0003DMG400028474 Solanum tuberosum HOM05D000021 ORTHO05D000010 3.8e-06 56.2 55 47.3
TWI09G1256 Tripterygium wilfordii HOM05D000021 ORTHO05D000010 3.8e-06 56.2 78 46.2
HPP92_003622 Vanilla planifolia HOM05D000029 ORTHO05D001072 3.8e-06 56.2 96 34.4
VMungo0464G1158 Vigna mungo HOM05D000071 ORTHO05D000029 3.8e-06 56.2 94 40.4
Cc02_g16030 Coffea canephora HOM05D000021 ORTHO05D000010 5.0e-06 55.8 94 35.1
Cc08_g10210 Coffea canephora HOM05D000021 ORTHO05D000010 5.0e-06 55.8 130 34.6
Haze_16587 Corylus avellana HOM05D000311 ORTHO05D000183 5.0e-06 55.8 75 44.0
Duzib212G0987 Durio zibethinus HOM05D000311 ORTHO05D000183 5.0e-06 55.8 103 36.9
Lj4g0011925 Lotus japonicus HOM05D000021 ORTHO05D000010 5.0e-06 55.8 59 40.7
MD09G1166700 Malus domestica HOM05D001506 ORTHO05D000455 5.0e-06 55.8 113 35.4
Medtr4g029710 Medicago truncatula HOM05D000021 ORTHO05D000010 5.0e-06 55.8 56 41.1
Medtr8g077105 Medicago truncatula HOM05D000311 ORTHO05D000183 5.0e-06 55.8 139 33.8
QL03p053878 Quercus lobata HOM05D000071 ORTHO05D000029 5.0e-06 55.8 118 36.4
QL09p011963 Quercus lobata HOM05D000071 ORTHO05D000029 5.0e-06 55.8 86 34.9
BcaB08g34403 Brassica carinata HOM05D000094 ORTHO05D032433 6.5e-06 55.5 122 32.8
A01p09450 Brassica napus HOM05D000029 ORTHO05D001395 6.5e-06 55.5 102 33.3
Lsat_1_v5_gn_1_31421 Lactuca sativa HOM05D000311 ORTHO05D000183 6.5e-06 55.5 102 33.3
RcHm_v2.0_Chr2g0113671 Rosa chinensis HOM05D000021 ORTHO05D000010 6.5e-06 55.5 78 33.3
RcHm_v2.0_Chr5g0040481 Rosa chinensis HOM05D000021 ORTHO05D000010 6.5e-06 55.5 100 34.0
SalBow8G0642 Salvia bowleyana HOM05D000053 ORTHO05D000448 6.5e-06 55.5 217 50.7
Sp7g11600 Schrenkiella parvula HOM05D000053 ORTHO05D000035 6.5e-06 55.5 242 46.3
Solyc02g072400.1 Solanum lycopersicum HOM05D000021 ORTHO05D000010 6.5e-06 55.5 55 47.3
Sopen02g021350 Solanum pennellii HOM05D000021 ORTHO05D000010 6.5e-06 55.5 58 46.6
SGA_v2.0_scaffold120G32976 Striga asiatica HOM05D000021 ORTHO05D000010 6.5e-06 55.5 60 46.7
TPR.G30033 Trifolium pratense HOM05D000021 ORTHO05D000010 6.5e-06 55.5 76 32.9
TWI59G0161 Tripterygium wilfordii HOM05D000053 ORTHO05D000035 6.5e-06 55.5 128 30.5
Zm00001eb309030 Zea mays HOM05D000094 ORTHO05D001414 6.5e-06 55.5 73 38.4
Actinidia24294 Actinidia chinensis HOM05D000021 ORTHO05D000010 8.5e-06 55.1 76 42.1
BraA01t00887Z Brassica rapa HOM05D000029 ORTHO05D001395 8.5e-06 55.1 102 33.3
CSS0025578 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 8.5e-06 55.1 133 31.6
Ca_22841_v3 Cicer arietinum L. HOM05D000021 ORTHO05D000010 8.5e-06 55.1 56 41.1
Haze_16590 Corylus avellana HOM05D000311 ORTHO05D000183 8.5e-06 55.1 77 42.9
Dinv22030 Davidia involucrata HOM05D000029 ORTHO05D005879 8.5e-06 55.1 53 47.2
Duzib212G0726 Durio zibethinus HOM05D000053 ORTHO05D000448 8.5e-06 55.1 118 33.9
Duzib212G0835 Durio zibethinus HOM05D000311 ORTHO05D000183 8.5e-06 55.1 100 35.0
Medtr0779s0010 Medicago truncatula HOM05D015984 ORTHO05D015166 8.5e-06 55.1 69 37.7
Medtr4g013315 Medicago truncatula HOM05D000053 ORTHO05D000448 8.5e-06 55.1 147 32.7
Nitab4.5_0000030g0300 Nicotiana tabacum HOM05D000021 ORTHO05D000010 8.5e-06 55.1 57 42.1
Peaxi162Scf00205g00723 Petunia axillaris HOM05D000021 ORTHO05D012344 8.5e-06 55.1 62 38.7
Peaxi162Scf00211g00079 Petunia axillaris HOM05D000517 ORTHO05D003374 8.5e-06 55.1 128 36.7
Prupe.1G264100 Prunus persica HOM05D003705 ORTHO05D010003 8.5e-06 55.1 52 50.0
Prupe.3G024600 Prunus persica HOM05D001506 ORTHO05D000455 8.5e-06 55.1 114 34.2
PGR142G3018 Punica granatum HOM05D000021 ORTHO05D000010 8.5e-06 55.1 53 45.3
Rhsim07G0215200 Rhododendron simsii HOM05D000029 ORTHO05D005879 8.5e-06 55.1 62 43.5
SMO195G0025 Selaginella moellendorffii HOM05D010048 ORTHO05D012120 8.5e-06 55.1 79 40.5
vmacro04616 Vaccinium macrocarpon HOM05D000029 ORTHO05D005879 8.5e-06 55.1 62 45.2


User provided reference genes

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