Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO203G0050 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 2.0e-126 455.7 215 100.0
SMO252G0024 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 9.7e-97 357.1 212 84.0
SMO331G0015 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.7e-88 329.7 159 96.9
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.5e-86 321.6 159 94.3
SMO110G0005 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 3.5e-78 295.4 171 86.5
SMO331G0031 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 3.2e-76 288.9 175 82.9
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 2.1e-43 179.9 217 52.1
SMO331G0061 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.4e-34 150.6 185 50.8
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.0e-30 135.2 140 54.3
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 2.4e-15 86.7 231 28.6
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 2.7e-14 83.2 183 31.1
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 3.5e-14 82.8 231 28.6
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 4.6e-14 82.4 234 27.4
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 6.0e-14 82.0 232 27.6
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 6.0e-14 82.0 232 27.6
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 6.0e-14 82.0 232 27.6
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 6.0e-14 82.0 183 31.7
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 7.9e-14 81.6 231 28.1
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 1.0e-13 81.3 195 29.7
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 1.3e-13 80.9 183 29.5
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 1.3e-13 80.9 233 27.5
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 1.8e-13 80.5 195 28.2
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 2.3e-13 80.1 183 29.5
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 2.3e-13 80.1 186 30.1
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 2.3e-13 80.1 186 30.1
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 3.0e-13 79.7 177 30.5
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 3.9e-13 79.3 186 30.1
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 3.9e-13 79.3 195 28.2
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 5.1e-13 79.0 187 29.4
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 5.1e-13 79.0 183 30.6
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 6.7e-13 78.6 183 29.5
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 6.7e-13 78.6 183 29.5
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 6.7e-13 78.6 183 29.0
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 6.7e-13 78.6 184 28.8
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 6.7e-13 78.6 186 29.0
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 6.7e-13 78.6 186 29.0
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 6.7e-13 78.6 186 29.0
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 8.7e-13 78.2 192 29.2
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 8.7e-13 78.2 186 29.0
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 8.7e-13 78.2 189 30.2
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.1e-12 77.8 230 26.5
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 1.1e-12 77.8 189 29.1
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 1.1e-12 77.8 183 29.0
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 1.5e-12 77.4 189 28.6
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 1.5e-12 77.4 189 28.6
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 1.5e-12 77.4 195 28.7
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 1.5e-12 77.4 179 31.8
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 1.9e-12 77.0 190 28.4
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 1.9e-12 77.0 176 29.5
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 1.9e-12 77.0 184 29.9
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 1.9e-12 77.0 189 32.3
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 2.5e-12 76.6 177 28.8
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 2.5e-12 76.6 194 28.9
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 2.5e-12 76.6 183 29.5
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 2.5e-12 76.6 186 30.6
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 3.3e-12 76.3 184 28.8
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 3.3e-12 76.3 186 28.5
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 3.3e-12 76.3 189 27.5
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 4.3e-12 75.9 176 27.8
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 4.3e-12 75.9 202 26.7
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 4.3e-12 75.9 183 30.6
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 5.6e-12 75.5 182 30.8
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 5.6e-12 75.5 177 28.2
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 5.6e-12 75.5 176 30.1
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 7.4e-12 75.1 141 29.8
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 7.4e-12 75.1 233 25.8
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 7.4e-12 75.1 183 30.1
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 9.6e-12 74.7 183 30.1
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 9.6e-12 74.7 231 26.0
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 9.6e-12 74.7 163 32.5
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 9.6e-12 74.7 183 29.0
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 9.6e-12 74.7 189 30.2
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 1.3e-11 74.3 186 30.6
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 1.3e-11 74.3 177 28.2
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 1.3e-11 74.3 177 29.4
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 1.3e-11 74.3 182 29.1
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 1.6e-11 73.9 180 27.8
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 1.6e-11 73.9 189 28.0
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 1.6e-11 73.9 165 29.7
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 2.1e-11 73.6 189 28.6
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 2.1e-11 73.6 186 29.0
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 2.1e-11 73.6 181 29.3
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 2.8e-11 73.2 178 30.3
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 2.8e-11 73.2 182 28.6
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 3.6e-11 72.8 176 28.4
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 3.6e-11 72.8 186 29.0
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 3.6e-11 72.8 192 29.7
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 4.8e-11 72.4 197 27.9
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 6.2e-11 72.0 177 27.1
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 6.2e-11 72.0 176 28.4
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 8.1e-11 71.6 186 28.0
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 8.1e-11 71.6 186 28.0
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 8.1e-11 71.6 188 28.7
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 8.1e-11 71.6 186 28.0
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 8.1e-11 71.6 182 31.3
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 1.1e-10 71.2 177 27.7
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 1.1e-10 71.2 180 27.2
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 1.4e-10 70.9 186 28.5
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 1.4e-10 70.9 183 27.9
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.4e-10 70.9 186 28.0
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 2.4e-10 70.1 187 28.9
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 2.4e-10 70.1 187 27.8
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 2.4e-10 70.1 177 29.4
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 3.1e-10 69.7 186 28.0
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 3.1e-10 69.7 186 28.5
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 4.0e-10 69.3 186 28.5
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 4.0e-10 69.3 182 28.6
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 4.0e-10 69.3 175 28.6
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 5.3e-10 68.9 182 28.6
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 6.9e-10 68.6 190 28.4
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 6.9e-10 68.6 176 28.4
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 6.9e-10 68.6 172 29.1
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 9.0e-10 68.2 186 28.0
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 9.0e-10 68.2 182 28.0
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 1.5e-09 67.4 177 28.2
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 2.6e-09 66.6 182 29.1
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 3.4e-09 66.2 176 28.4
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 4.5e-09 65.9 177 28.2
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 5.8e-09 65.5 141 31.9
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 5.8e-09 65.5 178 28.1
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 5.8e-09 65.5 183 27.3
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 9.9e-09 64.7 186 28.0
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 9.9e-09 64.7 193 28.5
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 9.9e-09 64.7 177 29.4
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 9.9e-09 64.7 202 26.2
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 2.9e-08 63.2 116 33.6
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 1.4e-07 60.8 76 38.2
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 1.9e-07 60.5 107 30.8
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 1.9e-07 60.5 107 30.8
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 5.5e-07 58.9 169 29.0
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 2.7e-06 56.6 84 38.1
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 4.6e-06 55.8 67 40.3


User provided reference genes

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