Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 1.9e-259 898.7 451 100.0
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 1.2e-168 597.0 468 63.9
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 8.4e-167 590.9 457 63.2
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 3.5e-165 585.5 456 62.9
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 3.0e-164 582.4 452 62.4
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 6.6e-164 581.3 456 63.8
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 6.6e-164 581.3 458 62.9
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.1e-163 580.5 455 63.3
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.9e-163 579.7 458 62.7
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 5.6e-163 578.2 449 62.8
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 7.3e-163 577.8 447 62.9
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 7.3e-163 577.8 466 61.4
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 9.6e-163 577.4 469 61.8
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 2.1e-162 576.2 457 61.3
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 2.1e-162 576.2 461 61.2
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 2.8e-162 575.9 457 63.2
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 3.6e-162 575.5 457 63.2
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 3.6e-162 575.5 453 62.3
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 3.6e-162 575.5 453 62.3
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 4.7e-162 575.1 457 62.1
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 6.2e-162 574.7 453 62.3
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 8.1e-162 574.3 458 62.2
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 1.1e-161 573.9 457 62.4
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 1.1e-161 573.9 448 62.7
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.4e-161 573.5 453 62.5
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.8e-161 573.2 447 62.0
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 1.8e-161 573.2 447 61.5
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 4.0e-161 572.0 457 62.6
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 6.9e-161 571.2 448 62.5
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 9.0e-161 570.9 461 60.3
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 1.5e-160 570.1 447 62.4
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 1.5e-160 570.1 457 60.8
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 2.0e-160 569.7 459 62.1
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 2.0e-160 569.7 464 61.0
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 2.6e-160 569.3 454 60.6
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 2.6e-160 569.3 457 62.6
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 3.4e-160 568.9 453 61.8
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 3.4e-160 568.9 450 62.2
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 4.4e-160 568.5 456 60.7
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 5.8e-160 568.2 449 62.8
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 5.8e-160 568.2 457 61.5
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 9.9e-160 567.4 456 60.5
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 1.3e-159 567.0 451 62.1
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 2.9e-159 565.8 452 61.9
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 2.9e-159 565.8 457 61.5
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 3.8e-159 565.5 457 61.3
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 3.8e-159 565.5 467 61.2
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 4.9e-159 565.1 457 61.5
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 6.4e-159 564.7 452 62.2
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 8.4e-159 564.3 456 62.5
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 1.1e-158 563.9 462 60.8
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 1.4e-158 563.5 457 62.1
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 1.4e-158 563.5 456 61.8
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 2.4e-158 562.8 457 61.3
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 4.2e-158 562.0 448 61.4
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 4.2e-158 562.0 448 61.4
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 4.2e-158 562.0 460 60.2
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 4.2e-158 562.0 456 62.9
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 5.4e-158 561.6 457 61.3
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 7.1e-158 561.2 457 60.4
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 9.3e-158 560.8 452 61.1
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 1.2e-157 560.5 450 61.8
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 1.2e-157 560.5 449 62.1
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 2.1e-157 559.7 453 62.0
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 3.5e-157 558.9 457 60.0
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 3.5e-157 558.9 446 62.6
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 4.6e-157 558.5 445 61.6
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 6.0e-157 558.1 457 61.9
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 6.0e-157 558.1 450 61.1
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 7.8e-157 557.8 451 61.2
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 7.8e-157 557.8 455 60.2
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 1.0e-156 557.4 457 61.7
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 1.3e-156 557.0 454 59.9
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 1.3e-156 557.0 453 59.8
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 1.7e-156 556.6 450 61.6
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 3.0e-156 555.8 453 60.5
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 5.1e-156 555.1 450 61.3
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 6.6e-156 554.7 455 61.5
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 6.6e-156 554.7 455 61.5
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 1.1e-155 553.9 453 60.3
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 1.1e-155 553.9 453 60.3
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 1.1e-155 553.9 476 58.0
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 2.5e-155 552.7 450 61.1
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 2.5e-155 552.7 447 60.9
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 2.5e-155 552.7 459 59.7
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 3.3e-155 552.4 452 60.2
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 5.6e-155 551.6 452 60.2
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 1.6e-154 550.1 457 60.6
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 2.1e-154 549.7 452 60.2
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 2.1e-154 549.7 449 60.4
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 2.8e-154 549.3 460 59.3
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 1.1e-153 547.4 452 60.0
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 3.1e-153 545.8 468 58.3
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 5.3e-153 545.0 466 58.8
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 1.5e-152 543.5 436 61.7
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 1.5e-152 543.5 450 60.2
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 2.6e-152 542.7 497 55.9
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 2.6e-152 542.7 457 60.0
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 5.8e-152 541.6 463 58.7
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 5.8e-152 541.6 430 61.6
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 9.9e-152 540.8 458 59.2
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 9.9e-152 540.8 458 59.2
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 1.3e-151 540.4 436 60.8
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.4e-150 537.0 457 60.0
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 4.2e-150 535.4 455 59.1
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 5.4e-150 535.0 455 58.7
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 1.6e-149 533.5 498 55.8
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 1.5e-147 526.9 451 57.9
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 2.5e-147 526.2 457 57.1
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 4.3e-147 525.4 467 57.8
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 2.1e-146 523.1 463 57.2
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 3.7e-146 522.3 456 59.6
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 6.2e-146 521.5 458 58.5
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 2.0e-144 516.5 486 55.3
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 4.5e-144 515.4 489 54.6
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 4.9e-143 511.9 452 57.1
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 1.9e-142 510.0 485 55.9
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 3.5e-141 505.8 533 51.0
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 1.5e-139 500.4 425 58.1
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 1.5e-139 500.4 443 56.4
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 2.5e-139 499.6 495 54.1
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 3.3e-139 499.2 455 55.6
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 9.0e-137 491.1 451 54.8
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 6.7e-132 474.9 453 55.6
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.6e-130 470.3 453 55.0
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 1.8e-129 466.8 387 61.2
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.5e-128 463.8 390 59.2
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 9.7e-123 444.5 460 52.4
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 1.1e-118 431.0 384 56.5
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.1e-117 426.8 377 59.4
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.7e-114 416.0 321 63.9
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 1.3e-111 407.5 332 62.0
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 1.3e-111 407.5 464 47.6
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 8.5e-111 404.8 372 57.8
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 2.5e-110 403.3 332 60.8
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 3.6e-109 399.4 353 59.2
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 3.0e-108 396.4 384 54.2
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 2.2e-103 380.2 337 58.2
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 2.0e-99 367.1 536 40.9
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 8.0e-93 345.1 280 61.4
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 5.2e-92 342.4 273 62.6
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 5.2e-92 342.4 386 49.5
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 1.4e-89 334.3 275 61.1
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 1.0e-87 328.2 272 59.6
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.6e-85 319.7 283 58.3
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 5.9e-80 302.4 455 40.0
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 1.7e-66 257.7 233 56.2
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.9e-62 244.2 164 68.3
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 5.4e-57 226.1 200 58.0
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 7.3e-54 215.7 170 61.2
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 2.8e-53 213.8 209 56.0
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 4.7e-53 213.0 233 51.9
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 9.9e-43 178.7 344 35.5
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 1.0e-39 168.7 228 42.5
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 5.6e-38 162.9 104 72.1
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 5.8e-35 152.9 126 60.3
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 7.6e-35 152.5 128 60.9
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 6.4e-34 149.4 151 54.3
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 2.1e-32 144.4 121 58.7
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 3.9e-31 140.2 133 56.4
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 1.6e-29 134.8 213 40.4
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 8.1e-29 132.5 113 57.5
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 5.8e-27 126.3 255 36.5
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.7e-26 124.8 111 55.9
Phvul.L001639 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 3.0e-23 114.0 69 69.6
Phvul.L008801 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 3.0e-23 114.0 69 69.6
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 1.1e-20 105.5 130 46.9
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 2.9e-18 97.4 67 67.2
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 1.6e-16 91.7 63 71.4
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 2.1e-16 91.3 65 64.6
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 6.1e-16 89.7 180 35.6
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 7.9e-16 89.4 65 63.1
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.8e-15 88.2 65 61.5
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 4.3e-14 83.6 59 64.4
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 6.3e-13 79.7 59 59.3
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.1e-12 79.0 77 51.9
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 4.1e-12 77.0 56 60.7
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 2.9e-10 70.9 57 57.9
Haze_13619 Corylus avellana HOM05D003643 ORTHO05D034905 1.6e-08 65.1 42 64.3
HanXRQChr06g0180401 Helianthus annuus HOM05D003643 ORTHO05D005001 1.0e-07 62.4 37 67.6
CSS0032340 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 5.7e-06 56.6 45 51.1


User provided reference genes

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